Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29435 * 124.80209 * 2 1 4 4 C 1.30943 * 117.36476 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.90342 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47330 * 270.00364 * 5 4 3 7 7 C 1.53005 * 109.47352 * 65.00057 * 6 5 4 8 8 C 1.53000 * 109.47434 * 185.00244 * 6 5 4 9 9 C 1.35664 * 114.18826 * 0.02562 * 4 3 2 10 10 C 1.46682 * 126.12323 * 180.02562 * 9 4 3 11 11 O 1.21680 * 120.00692 * 359.97438 * 10 9 4 12 12 N 1.34783 * 119.99500 * 179.97438 * 10 9 4 13 13 C 1.46497 * 119.99638 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46900 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47164 * 60.00014 * 14 13 12 16 16 O 1.42903 * 109.47171 * 299.99748 * 14 13 12 17 17 C 1.53003 * 109.47376 * 180.02562 * 14 13 12 18 18 N 1.46494 * 109.47283 * 185.00021 * 17 14 13 19 19 C 1.36937 * 120.00022 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00269 * 0.02562 * 19 18 17 21 21 C 1.38819 * 120.00106 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99813 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99927 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46930 * 60.00673 * 23 21 19 25 25 H 1.48496 * 109.46947 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47190 * 300.00622 * 23 21 19 27 27 S 1.70948 * 124.80968 * 180.27109 * 2 1 3 28 28 H 1.09002 * 109.47239 * 90.00758 * 1 2 3 29 29 H 1.09005 * 109.47218 * 209.99860 * 1 2 3 30 30 H 1.08996 * 109.47866 * 330.00141 * 1 2 3 31 31 H 1.09003 * 109.47193 * 30.00610 * 5 4 3 32 32 H 1.08999 * 109.47063 * 150.00097 * 5 4 3 33 33 H 1.08998 * 109.47202 * 305.00321 * 6 5 4 34 34 H 1.08998 * 109.46752 * 59.99988 * 7 6 5 35 35 H 1.08997 * 109.47127 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.46694 * 299.99837 * 7 6 5 37 37 H 1.08998 * 109.47421 * 59.99262 * 8 6 5 38 38 H 1.08998 * 109.47294 * 180.02562 * 8 6 5 39 39 H 1.09007 * 109.46918 * 299.99918 * 8 6 5 40 40 H 0.96996 * 120.00052 * 0.02562 * 12 10 9 41 41 H 1.08999 * 109.47200 * 60.00094 * 13 12 10 42 42 H 1.08997 * 109.47487 * 300.00148 * 13 12 10 43 43 H 0.96700 * 114.00311 * 300.00378 * 16 14 13 44 44 H 1.09005 * 109.46682 * 304.99749 * 17 14 13 45 45 H 1.08999 * 109.47221 * 64.99915 * 17 14 13 46 46 H 0.96999 * 120.00388 * 359.97438 * 18 17 14 47 47 H 0.96997 * 120.00150 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5196 2.0420 0.0000 6 6 4.8502 2.4298 -1.4426 7 6 3.5919 2.9671 -2.1274 8 6 5.9331 3.5106 -1.4448 9 6 3.9351 -0.4057 0.0004 10 6 5.3189 -0.8923 0.0015 11 8 6.2425 -0.1001 0.0020 12 7 5.5674 -2.2170 0.0018 13 6 6.9494 -2.7030 0.0022 14 6 6.9519 -4.2330 0.0019 15 1 6.4391 -4.5970 -0.8884 16 8 6.2786 -4.7108 1.1683 17 6 8.3953 -4.7407 0.0030 18 7 8.3995 -6.2006 -0.1177 19 6 9.5869 -6.8824 -0.1392 20 1 10.5203 -6.3439 -0.0667 21 6 9.5910 -8.2659 -0.2530 22 7 8.4535 -8.9223 -0.3409 23 14 11.2107 -9.1959 -0.2831 24 1 11.9532 -8.9375 0.9768 25 1 10.9438 -10.6510 -0.4112 26 1 12.0229 -8.7383 -1.4390 27 16 2.4828 -1.4036 -0.0066 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3635 0.8899 0.5138 31 1 4.0764 2.8954 0.5132 32 1 5.4330 1.7431 0.5143 33 1 5.2106 1.5532 -1.9810 34 1 3.2315 3.8437 -1.5890 35 1 3.8273 3.2430 -3.1552 36 1 2.8205 2.1971 -2.1258 37 1 6.8295 3.1278 -0.9570 38 1 6.1683 3.7872 -2.4726 39 1 5.5727 4.3872 -0.9064 40 1 4.8312 -2.8485 0.0010 41 1 7.4624 -2.3386 0.8923 42 1 7.4629 -2.3390 -0.8876 43 1 6.6813 -4.4249 1.9997 44 1 8.9343 -4.3050 -0.8383 45 1 8.8813 -4.4517 0.9349 46 1 7.5613 -6.6844 -0.1824 47 1 8.4563 -9.8890 -0.4208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268314312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = -51.597105 kcal Electronic energy + Delta-G solvation = -27073.067329 eV Core-core repulsion = 23189.361517 eV Total energy + Delta-G solvation = -3883.705811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79270 -39.41805 -37.64187 -36.29731 -34.47061 -34.04299 -32.73302 -31.36858 -29.81288 -28.93544 -27.75192 -27.26065 -25.34549 -23.45002 -22.87496 -21.61420 -21.43792 -20.38717 -19.61807 -18.31030 -17.33546 -17.14208 -16.21561 -16.13075 -15.73352 -15.54034 -15.07769 -14.70753 -14.63315 -14.47116 -14.12459 -14.11829 -13.75931 -13.62674 -13.10670 -13.03242 -12.94420 -12.81494 -12.65192 -12.40929 -12.36372 -11.98671 -11.89492 -11.78515 -11.12181 -11.07394 -10.98940 -10.82111 -10.78106 -10.67773 -10.26474 -10.23067 -9.98205 -9.83309 -9.80136 -9.55460 -9.26199 -8.97259 -8.92217 -6.97028 -5.78477 -3.08410 -0.05556 0.85485 1.26287 2.15974 2.93003 2.97494 3.42767 3.47014 3.48208 3.63146 4.45088 4.51043 4.57111 4.66214 4.71991 4.76530 4.81680 4.85850 4.96227 5.01032 5.05668 5.17896 5.37091 5.46614 5.52888 5.53459 5.56090 5.56637 5.61645 5.71647 5.72180 5.77815 5.89286 5.92596 6.08233 6.14258 6.17120 6.22615 6.29533 6.47075 6.62695 7.22875 7.37207 7.65690 7.87120 7.98059 8.39542 9.51154 10.07183 10.42825 11.43803 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.002162 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.936808 B =12949.009733 C =14229.307102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.060 3.940 3 N -0.474 5.474 4 C 0.157 3.843 5 C -0.052 4.052 6 C -0.082 4.082 7 C -0.144 4.144 8 C -0.143 4.143 9 C -0.299 4.299 10 C 0.595 3.405 11 O -0.522 6.522 12 N -0.715 5.715 13 C 0.091 3.909 14 C 0.088 3.912 15 H 0.105 0.895 16 O -0.553 6.553 17 C 0.128 3.872 18 N -0.726 5.726 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 S 0.163 5.837 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.402 0.598 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.374 0.626 44 H 0.029 0.971 45 H 0.024 0.976 46 H 0.388 0.612 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.004 23.192 0.123 28.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.215 4.215 3 N -0.189 5.189 4 C 0.019 3.981 5 C -0.092 4.092 6 C -0.101 4.101 7 C -0.202 4.202 8 C -0.201 4.201 9 C -0.423 4.423 10 C 0.380 3.620 11 O -0.401 6.401 12 N -0.367 5.367 13 C -0.033 4.033 14 C 0.028 3.972 15 H 0.123 0.877 16 O -0.357 6.357 17 C -0.001 4.001 18 N -0.371 5.371 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 S 0.421 5.579 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.238 0.762 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.221 0.779 44 H 0.047 0.953 45 H 0.042 0.958 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.066 22.781 -0.329 28.467 hybrid contribution 1.155 -0.197 0.326 1.216 sum -15.912 22.584 -0.003 27.626 Atomic orbital electron populations 1.20536 0.84670 1.04659 1.04295 1.27412 1.02135 0.91241 1.00756 1.66121 1.04368 1.31066 1.17341 1.20616 0.89788 0.93364 0.94321 1.20598 0.96855 0.93321 0.98423 1.20951 0.95780 0.98852 0.94559 1.21860 0.97383 1.01152 0.99769 1.21784 0.98519 0.98067 1.01681 1.25476 0.97989 0.97233 1.21587 1.16667 0.86008 0.82556 0.76763 1.90791 1.44208 1.54804 1.50291 1.45820 1.09798 1.06128 1.74926 1.22164 0.81973 0.95647 1.03542 1.22421 0.95519 0.89544 0.89702 0.87686 1.86580 1.56297 1.77154 1.15719 1.21189 0.92261 0.87779 0.98839 1.42226 1.06797 0.99342 1.88699 1.19170 0.85986 0.89460 1.42988 0.91241 1.24766 0.96912 0.96428 1.02718 1.69663 1.24132 1.07282 1.56754 0.86246 0.82976 0.78951 0.77864 1.21223 1.21637 1.21221 1.84046 0.96473 1.11158 1.66257 0.89112 0.89667 0.88889 0.90391 0.87605 0.91114 0.92628 0.93142 0.92764 0.92117 0.92694 0.92804 0.76242 0.90665 0.90042 0.77927 0.95316 0.95849 0.77719 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.46 36.00 0.38 -0.02 16 2 C 0.06 0.52 7.39 -13.29 -0.10 0.42 16 3 N -0.47 -5.08 9.64 -7.70 -0.07 -5.15 16 4 C 0.16 1.82 5.32 -83.89 -0.45 1.37 16 5 C -0.05 -0.57 4.50 -27.89 -0.13 -0.69 16 6 C -0.08 -0.84 2.91 -90.62 -0.26 -1.10 16 7 C -0.14 -1.34 8.97 37.16 0.33 -1.01 16 8 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 9 C -0.30 -3.48 6.48 -37.10 -0.24 -3.73 16 10 C 0.59 7.82 7.78 -12.85 -0.10 7.72 16 11 O -0.52 -7.96 14.27 5.21 0.07 -7.88 16 12 N -0.72 -8.67 5.44 -61.62 -0.34 -9.00 16 13 C 0.09 1.16 5.34 -4.04 -0.02 1.14 16 14 C 0.09 1.32 3.09 -26.73 -0.08 1.24 16 15 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 16 O -0.55 -8.51 13.03 -35.23 -0.46 -8.97 16 17 C 0.13 2.43 5.90 -4.04 -0.02 2.41 16 18 N -0.73 -18.20 5.55 -59.91 -0.33 -18.53 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 S 0.16 1.45 22.31 -107.50 -2.40 -0.95 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.11 1.29 6.01 -51.93 -0.31 0.98 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.56 6.75 -51.93 -0.35 0.21 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.40 4.50 7.53 -40.82 -0.31 4.19 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.37 4.75 9.05 45.56 0.41 5.16 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.39 10.42 7.67 -40.82 -0.31 10.11 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -33.26 402.25 -9.12 -42.37 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.76 Total: 12.81 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.60 Total: -0.60 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.02 Total: -60.17 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.38 Total: -16.85 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.40 Total: -0.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.26 -9.12 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268314312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.224 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds