Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29424 * 124.80759 * 2 1 4 4 C 1.30939 * 117.36882 * 180.02562 * 3 2 1 5 5 C 1.50693 * 122.90730 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47490 * 269.99769 * 5 4 3 7 7 C 1.53006 * 109.46668 * 64.99885 * 6 5 4 8 8 C 1.52995 * 109.47178 * 184.99884 * 6 5 4 9 9 C 1.35665 * 114.18955 * 359.97438 * 4 3 2 10 10 C 1.46682 * 126.13248 * 180.02562 * 9 4 3 11 11 O 1.21693 * 119.99805 * 0.02562 * 10 9 4 12 12 N 1.34777 * 120.00182 * 180.02562 * 10 9 4 13 13 C 1.46498 * 119.99828 * 180.27909 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 H 1.09008 * 109.47304 * 304.99667 * 14 13 12 16 16 O 1.42902 * 109.47328 * 64.99617 * 14 13 12 17 17 C 1.53003 * 109.47530 * 184.99929 * 14 13 12 18 18 N 1.46491 * 109.47329 * 179.97438 * 17 14 13 19 19 C 1.36943 * 120.00083 * 180.02562 * 18 17 14 20 20 H 1.08000 * 119.99413 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00067 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00346 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99532 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47242 * 90.00151 * 23 21 19 25 25 H 1.48506 * 109.46926 * 209.99378 * 23 21 19 26 26 H 1.48495 * 109.47585 * 329.99870 * 23 21 19 27 27 S 1.70957 * 124.80392 * 180.35727 * 2 1 3 28 28 H 1.08998 * 109.47457 * 90.00521 * 1 2 3 29 29 H 1.09000 * 109.47197 * 210.00160 * 1 2 3 30 30 H 1.08998 * 109.46937 * 329.99746 * 1 2 3 31 31 H 1.09004 * 109.47165 * 30.00050 * 5 4 3 32 32 H 1.08998 * 109.47154 * 149.99504 * 5 4 3 33 33 H 1.09000 * 109.47048 * 305.00312 * 6 5 4 34 34 H 1.08990 * 109.47235 * 299.99974 * 7 6 5 35 35 H 1.09000 * 109.47038 * 60.00420 * 7 6 5 36 36 H 1.08999 * 109.46666 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47199 * 60.00261 * 8 6 5 38 38 H 1.09008 * 109.47179 * 180.02562 * 8 6 5 39 39 H 1.09000 * 109.47480 * 300.00164 * 8 6 5 40 40 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 41 41 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 42 42 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 43 43 H 0.96696 * 113.99765 * 60.00422 * 16 14 13 44 44 H 1.09000 * 109.46800 * 300.00452 * 17 14 13 45 45 H 1.09002 * 109.46892 * 59.99206 * 17 14 13 46 46 H 0.97004 * 120.00228 * 359.97438 * 18 17 14 47 47 H 0.96990 * 120.00008 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0627 0.0000 4 6 3.5441 0.8931 -0.0005 5 6 4.5197 2.0416 -0.0012 6 6 4.8494 2.4301 -1.4438 7 6 3.5906 2.9679 -2.1274 8 6 5.9323 3.5108 -1.4462 9 6 3.9351 -0.4059 -0.0004 10 6 5.3188 -0.8927 -0.0004 11 8 6.2425 -0.1004 0.0000 12 7 5.5672 -2.2174 -0.0009 13 6 6.9492 -2.7035 0.0054 14 6 6.9516 -4.2334 0.0104 15 1 6.3600 -4.5950 0.8515 16 8 6.3870 -4.7148 -1.2109 17 6 8.3890 -4.7408 0.1426 18 7 8.3913 -6.2057 0.1480 19 6 9.5734 -6.8883 0.2582 20 1 10.5040 -6.3464 0.3407 21 6 9.5754 -8.2763 0.2639 22 7 8.4412 -8.9366 0.1639 23 14 11.1880 -9.2072 0.4135 24 1 11.4892 -9.4484 1.8475 25 1 11.0762 -10.5080 -0.2943 26 1 12.2806 -8.4056 -0.1937 27 16 2.4828 -1.4037 -0.0088 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 4.0769 2.8949 0.5127 32 1 5.4334 1.7425 0.5124 33 1 5.2094 1.5538 -1.9828 34 1 2.8191 2.1980 -2.1257 35 1 3.2306 3.8442 -1.5884 36 1 3.8256 3.2450 -3.1551 37 1 6.8290 3.1277 -0.9592 38 1 6.1669 3.7879 -2.4741 39 1 5.5724 4.3872 -0.9072 40 1 4.8309 -2.8489 -0.0008 41 1 7.4654 -2.3423 -0.8842 42 1 7.4595 -2.3364 0.8958 43 1 6.8636 -4.4313 -2.0031 44 1 8.9807 -4.3793 -0.6984 45 1 8.8197 -4.3736 1.0742 46 1 7.5553 -6.6923 0.0743 47 1 8.4428 -9.9065 0.1675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268314316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = -51.596300 kcal Electronic energy + Delta-G solvation = -27078.348979 eV Core-core repulsion = 23194.643202 eV Total energy + Delta-G solvation = -3883.705777 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79483 -39.41636 -37.63628 -36.30051 -34.48189 -34.02913 -32.73532 -31.35726 -29.81655 -28.93778 -27.75243 -27.26331 -25.34857 -23.45216 -22.88151 -21.63551 -21.41398 -20.38932 -19.61442 -18.31269 -17.33745 -17.13434 -16.22073 -16.14854 -15.66593 -15.58663 -15.08005 -14.73223 -14.59054 -14.48557 -14.12198 -14.11368 -13.77654 -13.62788 -13.10929 -13.04646 -12.91989 -12.82467 -12.63851 -12.42532 -12.36463 -11.97129 -11.90216 -11.79000 -11.12512 -11.07627 -10.98002 -10.84138 -10.78289 -10.67527 -10.26726 -10.19227 -9.98739 -9.83224 -9.80416 -9.54465 -9.26543 -8.97560 -8.92604 -6.96745 -5.78512 -3.08436 -0.05762 0.85238 1.25992 2.15796 2.93039 2.97150 3.42116 3.47203 3.49013 3.62933 4.44936 4.50462 4.57192 4.66426 4.71601 4.76225 4.81477 4.85811 4.96111 5.00824 5.05425 5.18792 5.36927 5.46303 5.52690 5.53177 5.55315 5.56277 5.61378 5.71320 5.71948 5.77699 5.89345 5.92282 6.08160 6.14165 6.17302 6.22335 6.29341 6.46906 6.62968 7.22257 7.36875 7.66187 7.88813 7.97665 8.39629 9.51360 10.07528 10.43377 11.43801 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017448 B = 0.002155 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.346148 B =12990.115193 C =14248.455313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.060 3.940 3 N -0.474 5.474 4 C 0.157 3.843 5 C -0.053 4.053 6 C -0.082 4.082 7 C -0.144 4.144 8 C -0.143 4.143 9 C -0.299 4.299 10 C 0.595 3.405 11 O -0.522 6.522 12 N -0.715 5.715 13 C 0.091 3.909 14 C 0.088 3.912 15 H 0.104 0.896 16 O -0.552 6.552 17 C 0.128 3.872 18 N -0.726 5.726 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 S 0.162 5.838 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.402 0.598 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.374 0.626 44 H 0.024 0.976 45 H 0.029 0.971 46 H 0.389 0.611 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.932 23.261 -1.960 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.215 4.215 3 N -0.189 5.189 4 C 0.019 3.981 5 C -0.092 4.092 6 C -0.101 4.101 7 C -0.202 4.202 8 C -0.201 4.201 9 C -0.423 4.423 10 C 0.380 3.620 11 O -0.401 6.401 12 N -0.367 5.367 13 C -0.033 4.033 14 C 0.028 3.972 15 H 0.122 0.878 16 O -0.357 6.357 17 C -0.001 4.001 18 N -0.371 5.371 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 S 0.420 5.580 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.237 0.763 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.221 0.779 44 H 0.041 0.959 45 H 0.047 0.953 46 H 0.224 0.776 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.029 22.861 -1.547 28.548 hybrid contribution 1.171 -0.206 -0.246 1.214 sum -15.858 22.655 -1.793 27.712 Atomic orbital electron populations 1.20536 0.84665 1.04657 1.04301 1.27411 1.02132 0.91222 1.00743 1.66112 1.04369 1.31070 1.17339 1.20613 0.89785 0.93364 0.94313 1.20601 0.96867 0.93327 0.98421 1.20950 0.95778 0.98838 0.94562 1.21859 0.97380 1.01149 0.99774 1.21784 0.98522 0.98074 1.01674 1.25476 0.97982 0.97232 1.21584 1.16670 0.86010 0.82560 0.76752 1.90794 1.44209 1.54798 1.50289 1.45836 1.09774 1.06127 1.74939 1.22177 0.81945 0.95647 1.03519 1.22403 0.96912 0.89508 0.88354 0.87787 1.86578 1.56533 1.77130 1.15429 1.21181 0.92298 0.87740 0.98914 1.42228 1.07483 0.98692 1.88666 1.19214 0.86458 0.89102 1.42745 0.91199 1.24765 0.96947 0.96394 1.02749 1.69674 1.24276 1.06816 1.57019 0.86177 0.82900 0.79429 0.77578 1.21670 1.21716 1.20740 1.84043 0.96494 1.11194 1.66280 0.89104 0.89670 0.88885 0.90385 0.87592 0.91125 0.92756 0.92632 0.93146 0.92118 0.92701 0.92797 0.76313 0.90648 0.90043 0.77867 0.95869 0.95330 0.77634 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.46 36.01 0.38 -0.02 16 2 C 0.06 0.52 7.39 -13.29 -0.10 0.42 16 3 N -0.47 -5.07 9.64 -7.71 -0.07 -5.15 16 4 C 0.16 1.82 5.32 -83.90 -0.45 1.37 16 5 C -0.05 -0.57 4.50 -27.89 -0.13 -0.70 16 6 C -0.08 -0.83 2.91 -90.62 -0.26 -1.10 16 7 C -0.14 -1.34 8.97 37.16 0.33 -1.00 16 8 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 9 C -0.30 -3.48 6.48 -37.09 -0.24 -3.72 16 10 C 0.59 7.82 7.78 -12.85 -0.10 7.72 16 11 O -0.52 -7.96 14.27 5.20 0.07 -7.88 16 12 N -0.72 -8.66 5.50 -61.62 -0.34 -9.00 16 13 C 0.09 1.17 5.31 -4.04 -0.02 1.15 16 14 C 0.09 1.32 3.09 -26.73 -0.08 1.24 16 15 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 16 O -0.55 -8.62 13.03 -35.23 -0.46 -9.08 16 17 C 0.13 2.42 5.92 -4.05 -0.02 2.40 16 18 N -0.73 -18.18 5.49 -59.91 -0.33 -18.51 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 S 0.16 1.44 22.31 -107.50 -2.40 -0.96 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.11 1.29 6.01 -51.93 -0.31 0.98 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.56 6.75 -51.93 -0.35 0.21 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.40 4.47 7.66 -40.82 -0.31 4.16 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.37 4.88 9.04 45.56 0.41 5.30 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.39 10.45 7.54 -40.82 -0.31 10.14 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -33.29 402.25 -9.12 -42.41 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.76 Total: 12.83 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.60 Total: -0.57 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.02 Total: -60.14 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.38 Total: -16.96 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.40 Total: -0.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.29 -9.12 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268314316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.186 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds