Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46819 * 2 1 4 4 O 1.34049 * 126.77265 * 269.99833 * 3 2 1 5 5 N 1.20917 * 111.56526 * 180.02562 * 4 3 2 6 6 C 1.30178 * 111.60526 * 359.74749 * 5 4 3 7 7 C 1.50696 * 126.80414 * 180.25203 * 6 5 4 8 8 C 1.35441 * 126.77983 * 90.00124 * 3 2 1 9 9 C 1.50703 * 128.00716 * 359.96150 * 8 3 2 10 10 N 1.46899 * 109.47107 * 89.99877 * 9 8 3 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47552 * 295.00255 * 12 11 10 14 14 C 1.53005 * 109.47067 * 175.00065 * 12 11 10 15 15 N 1.46497 * 109.47385 * 55.00219 * 12 11 10 16 16 C 1.34779 * 120.00575 * 204.99719 * 15 12 11 17 17 O 1.21284 * 119.99299 * 0.02562 * 16 15 12 18 18 C 1.50700 * 120.00414 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.47153 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00054 * 180.02562 * 19 18 16 21 21 H 1.08007 * 120.00060 * 0.02562 * 20 19 18 22 22 C 1.38794 * 120.00054 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00249 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00150 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47037 * 60.00040 * 24 22 20 26 26 H 1.48501 * 109.47635 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.47289 * 300.00654 * 24 22 20 28 28 H 1.08998 * 109.47198 * 300.00103 * 1 2 3 29 29 H 1.08994 * 109.47299 * 60.00528 * 1 2 3 30 30 H 1.09005 * 109.46913 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46790 * 239.99545 * 2 1 3 32 32 H 1.08996 * 109.46863 * 119.99771 * 2 1 3 33 33 H 1.08999 * 109.47089 * 270.16352 * 7 6 5 34 34 H 1.09006 * 109.47064 * 30.16717 * 7 6 5 35 35 H 1.09000 * 109.47207 * 150.16255 * 7 6 5 36 36 H 1.09002 * 109.47152 * 329.99965 * 9 8 3 37 37 H 1.09001 * 109.46980 * 210.00065 * 9 8 3 38 38 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 39 39 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 40 40 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 41 41 H 1.08999 * 109.46355 * 60.00292 * 14 12 11 42 42 H 1.09000 * 109.47297 * 180.02562 * 14 12 11 43 43 H 1.08994 * 109.46984 * 300.00273 * 14 12 11 44 44 H 0.97002 * 120.00045 * 25.00065 * 15 12 11 45 45 H 1.09003 * 109.47153 * 300.00577 * 18 16 15 46 46 H 1.09000 * 109.46441 * 60.00267 * 18 16 15 47 47 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2998 2.1774 -1.0738 5 7 2.6891 3.2774 -0.7566 6 6 2.7328 3.4158 0.5371 7 6 3.1599 4.6433 1.2998 8 6 2.3026 2.1854 1.0848 9 6 2.1701 1.8128 2.5390 10 7 3.4326 1.2294 3.0120 11 6 3.3406 0.8538 4.4293 12 6 4.6714 0.2520 4.8847 13 1 4.8503 -0.6810 4.3502 14 6 4.6182 -0.0241 6.3887 15 7 5.7565 1.1940 4.5994 16 6 7.0147 0.7415 4.4299 17 8 7.2485 -0.4457 4.5133 18 6 8.1308 1.7104 4.1358 19 16 9.6873 0.8032 3.9619 20 6 10.7860 2.1407 3.6330 21 1 10.4089 3.1520 3.5931 22 6 12.1363 1.8949 3.4263 23 7 12.5960 0.6625 3.4755 24 14 13.3011 3.3129 3.0769 25 1 13.2800 4.2634 4.2177 26 1 14.6784 2.7887 2.8941 27 1 12.8706 4.0140 1.8406 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2333 4.6009 1.4848 34 1 2.9267 5.5335 0.7155 35 1 2.6287 4.6834 2.2507 36 1 1.3672 1.0849 2.6559 37 1 1.9403 2.7041 3.1229 38 1 3.7008 0.4392 2.4449 39 1 3.1192 1.7386 5.0260 40 1 2.5457 0.1194 4.5595 41 1 3.8108 -0.7250 6.6009 42 1 5.5664 -0.4524 6.7133 43 1 4.4394 0.9088 6.9232 44 1 5.5695 2.1434 4.5324 45 1 7.9153 2.2425 3.2092 46 1 8.2161 2.4255 4.9541 47 1 13.5396 0.4907 3.3306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268679046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = 5.529248 kcal Electronic energy + Delta-G solvation = -27060.139278 eV Core-core repulsion = 23178.910651 eV Total energy + Delta-G solvation = -3881.228627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.13057 -39.36938 -37.47642 -35.74151 -34.87040 -33.84249 -32.38980 -31.43728 -30.46287 -28.91192 -28.45241 -27.33827 -25.44276 -24.62788 -23.95103 -21.87702 -21.43558 -20.19630 -20.16720 -17.83455 -17.82112 -17.36539 -16.58931 -16.28364 -15.56515 -15.34534 -14.98819 -14.80553 -14.76753 -14.57067 -14.29924 -13.98268 -13.59826 -13.45812 -13.30259 -13.16012 -13.08219 -12.83215 -12.71784 -12.54071 -12.43356 -12.25980 -11.98667 -11.93348 -11.78592 -11.59134 -11.11290 -11.02090 -11.00645 -10.98391 -10.72915 -10.06796 -9.77804 -9.51123 -9.29708 -9.02390 -8.79276 -8.75275 -8.18664 -6.44841 -6.17760 -3.87577 1.19958 1.96549 2.82667 3.10671 3.20891 3.26322 3.30297 3.35341 3.74967 3.87748 4.04367 4.12006 4.24725 4.36742 4.51746 4.62749 4.68770 4.77801 4.81297 4.97520 5.10816 5.17098 5.18329 5.20968 5.22241 5.31602 5.31997 5.34605 5.37075 5.42958 5.44931 5.55626 5.58495 5.60347 5.70345 5.73470 5.94663 5.97285 6.01074 6.14620 6.22866 6.56705 6.78533 6.97950 7.63216 7.87963 8.09323 8.39051 8.74435 9.27537 10.89638 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010762 B = 0.002528 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.223028 B =11073.833121 C =12526.695158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C -0.023 4.023 4 O 0.097 5.903 5 N -0.369 5.369 6 C 0.038 3.962 7 C -0.074 4.074 8 C -0.195 4.195 9 C 0.140 3.860 10 N -0.680 5.680 11 C 0.052 3.948 12 C 0.146 3.854 13 H 0.084 0.916 14 C -0.163 4.163 15 N -0.720 5.720 16 C 0.534 3.466 17 O -0.524 6.524 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.346 0.654 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.400 0.600 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.941 2.024 -1.221 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.088 4.088 4 O 0.034 5.966 5 N -0.075 5.075 6 C -0.121 4.121 7 C -0.131 4.131 8 C -0.200 4.200 9 C 0.011 3.989 10 N -0.312 5.312 11 C -0.078 4.078 12 C 0.041 3.959 13 H 0.102 0.898 14 C -0.222 4.222 15 N -0.373 5.373 16 C 0.320 3.680 17 O -0.399 6.399 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.165 0.835 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.235 0.765 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.822 1.334 -2.000 27.926 hybrid contribution -0.198 1.700 0.251 1.730 sum -28.021 3.034 -1.749 28.239 Atomic orbital electron populations 1.21776 0.93422 1.02769 1.02730 1.20119 0.96637 0.86701 1.04787 1.24301 1.01721 0.96629 0.86139 1.84815 1.61365 1.17700 1.32766 1.73868 1.17726 0.99589 1.16284 1.23421 1.00932 0.97924 0.89831 1.20154 1.02706 0.91734 0.98539 1.20761 1.08470 0.94013 0.96716 1.20068 0.90735 0.99639 0.88448 1.60382 1.30725 1.37062 1.03053 1.22312 0.96282 0.99995 0.89179 1.20821 0.85607 0.93795 0.95725 0.89767 1.22156 1.02914 1.01692 0.95406 1.45844 1.06767 1.10562 1.74170 1.20251 0.82973 0.89395 0.75388 1.90685 1.82888 1.16925 1.49420 1.23509 1.00212 1.02141 1.04370 1.85347 0.93876 1.11318 1.92936 1.22832 0.94939 0.94277 1.56220 0.91043 1.24982 0.97335 0.96481 0.94788 1.70010 1.15075 1.18901 1.46406 0.86242 0.79167 0.81256 0.78942 1.19954 1.20833 1.19950 0.92260 0.91977 0.91166 0.89055 0.88920 0.89574 0.90874 0.90212 0.93947 0.89640 0.83541 0.90239 0.93768 0.92054 0.91338 0.92470 0.76550 0.89335 0.89474 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.30 16 2 C -0.04 -0.25 6.30 -27.88 -0.18 -0.42 16 3 C -0.02 -0.21 6.74 -35.31 -0.24 -0.45 16 4 O 0.10 1.13 11.20 17.15 0.19 1.33 16 5 N -0.37 -4.76 12.07 33.42 0.40 -4.35 16 6 C 0.04 0.42 7.33 -82.10 -0.60 -0.18 16 7 C -0.07 -0.63 10.39 36.00 0.37 -0.26 16 8 C -0.20 -1.78 5.83 -104.42 -0.61 -2.39 16 9 C 0.14 0.96 5.93 -4.98 -0.03 0.93 16 10 N -0.68 -5.46 6.21 -115.05 -0.71 -6.17 16 11 C 0.05 0.37 5.24 -3.82 -0.02 0.35 16 12 C 0.15 1.54 2.82 -67.93 -0.19 1.35 16 13 H 0.08 1.06 7.58 -51.93 -0.39 0.67 16 14 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 15 N -0.72 -9.31 4.80 -53.81 -0.26 -9.57 16 16 C 0.53 9.88 7.81 -10.98 -0.09 9.79 16 17 O -0.52 -11.73 15.52 5.55 0.09 -11.64 16 18 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 24 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.43 8.05 -51.93 -0.42 0.01 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.52 7.65 -51.93 -0.40 0.12 16 36 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 37 H 0.09 0.53 7.65 -51.93 -0.40 0.13 16 38 H 0.35 3.07 8.72 -39.29 -0.34 2.73 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.40 4.39 8.60 -40.82 -0.35 4.04 16 45 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 46 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 47 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 411.70 15.07 6.20 6.20 Total: -1.00 -35.80 411.70 -8.79 -44.59 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.76 Total: 1.45 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.44 Total: -8.87 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.16 Total: -45.87 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.28 Total: -10.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.80 -8.79 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268679046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.120 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds