Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46783 * 2 1 4 4 H 1.08995 * 109.46772 * 304.22077 * 3 2 1 5 5 C 1.52994 * 109.46720 * 184.22449 * 3 2 1 6 6 N 1.46506 * 109.47007 * 185.00151 * 5 3 2 7 7 C 1.34774 * 120.00008 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00056 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99563 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.46846 * 180.02562 * 9 7 6 11 11 C 1.76203 * 100.00055 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99688 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99921 * 179.97438 * 11 10 9 14 14 N 1.31622 * 120.00272 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99689 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47603 * 59.99716 * 15 13 11 17 17 H 1.48507 * 109.46896 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46893 * 299.99603 * 15 13 11 19 19 N 1.46897 * 109.47138 * 64.22205 * 3 2 1 20 20 C 1.46902 * 110.99957 * 59.19672 * 19 3 2 21 21 C 1.50699 * 109.47108 * 174.48725 * 20 19 3 22 22 O 1.34755 * 126.44557 * 269.69167 * 21 20 19 23 23 C 1.33967 * 107.75525 * 179.83759 * 22 21 20 24 24 C 1.50701 * 125.61879 * 180.18230 * 23 22 21 25 25 N 1.30262 * 108.76140 * 0.43233 * 23 22 21 26 26 C 1.34332 * 126.44362 * 89.99872 * 21 20 19 27 27 C 1.50703 * 126.16420 * 0.02562 * 26 21 20 28 28 H 1.09005 * 109.46589 * 174.07103 * 1 2 3 29 29 H 1.08996 * 109.47577 * 294.06779 * 1 2 3 30 30 H 1.08997 * 109.46966 * 54.07982 * 1 2 3 31 31 H 1.09000 * 109.47226 * 239.99683 * 2 1 3 32 32 H 1.09005 * 109.46886 * 119.99612 * 2 1 3 33 33 H 1.08994 * 109.47690 * 65.00089 * 5 3 2 34 34 H 1.09007 * 109.47228 * 304.99368 * 5 3 2 35 35 H 0.96994 * 119.99822 * 359.97438 * 6 5 3 36 36 H 1.08995 * 109.47678 * 299.99899 * 9 7 6 37 37 H 1.09001 * 109.47305 * 60.00617 * 9 7 6 38 38 H 0.97002 * 120.00293 * 179.97438 * 14 13 11 39 39 H 1.00896 * 110.99965 * 295.24297 * 19 3 2 40 40 H 1.08997 * 109.47485 * 294.48885 * 20 19 3 41 41 H 1.09001 * 109.47306 * 54.49072 * 20 19 3 42 42 H 1.08998 * 109.47041 * 270.30930 * 24 23 22 43 43 H 1.08995 * 109.47199 * 30.30893 * 24 23 22 44 44 H 1.08997 * 109.46850 * 150.31594 * 24 23 22 45 45 H 1.08993 * 109.47492 * 89.99689 * 27 26 21 46 46 H 1.08997 * 109.46945 * 209.99726 * 27 26 21 47 47 H 1.09003 * 109.47103 * 329.99311 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6161 1.9777 -0.8497 5 6 3.5662 1.4439 -0.1063 6 7 4.0629 2.8169 0.0137 7 6 5.3865 3.0628 -0.0504 8 8 6.1663 2.1474 -0.2078 9 6 5.8973 4.4752 0.0725 10 16 7.7029 4.4768 -0.0531 11 6 8.0200 6.2017 0.1175 12 1 7.1994 6.8908 0.2520 13 6 9.3244 6.6746 0.0800 14 7 10.3245 5.8346 -0.0835 15 14 9.6605 8.5031 0.2615 16 1 9.1460 8.9733 1.5728 17 1 11.1235 8.7472 0.1868 18 1 8.9794 9.2424 -0.8314 19 7 1.6353 2.1050 1.2471 20 6 2.1737 1.3985 2.4172 21 6 1.8538 2.1786 3.6662 22 8 2.6188 3.1327 4.2321 23 6 1.9774 3.5785 5.3205 24 6 2.4736 4.6534 6.2530 25 7 0.8567 2.9259 5.4430 26 6 0.7549 2.0498 4.4280 27 6 -0.3862 1.0949 4.1886 28 1 -0.3633 -1.0222 -0.1062 29 1 -0.3634 0.4191 0.9383 30 1 -0.3633 0.6029 -0.8322 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8637 1.0329 -1.0709 34 1 3.9867 0.8343 0.6937 35 1 3.4392 3.5490 0.1392 36 1 5.4773 5.0844 -0.7279 37 1 5.5994 4.8868 1.0369 38 1 11.2361 6.1651 -0.1100 39 1 0.6312 2.1860 1.3042 40 1 1.7238 0.4079 2.4823 41 1 3.2547 1.3007 2.3169 42 1 3.0701 4.2005 7.0449 43 1 3.0866 5.3624 5.6966 44 1 1.6229 5.1746 6.6919 45 1 -0.1846 0.1527 4.6981 46 1 -1.3089 1.5271 4.5757 47 1 -0.4905 0.9143 3.1187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269371105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = -26.922209 kcal Electronic energy + Delta-G solvation = -27383.488805 eV Core-core repulsion = 23500.852978 eV Total energy + Delta-G solvation = -3882.635828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.50621 -39.54321 -38.17987 -35.34874 -34.18563 -33.55492 -32.39542 -31.97369 -30.10718 -29.56599 -28.45041 -27.18447 -25.44562 -24.49280 -23.47899 -21.90114 -21.06392 -20.34132 -19.97445 -17.80043 -17.57565 -17.02100 -16.26854 -16.13689 -15.92369 -15.67175 -14.99394 -14.77540 -14.61032 -14.45966 -14.14438 -13.86494 -13.82530 -13.66774 -13.34433 -13.23912 -13.16949 -12.95699 -12.82700 -12.72336 -12.54473 -12.34384 -12.10319 -11.85763 -11.60214 -11.36446 -11.18381 -11.07526 -11.01328 -11.00845 -10.73721 -10.65071 -9.78656 -9.34094 -9.03310 -9.01730 -8.74606 -8.70143 -8.19145 -6.45487 -6.18187 -3.88135 1.21657 2.40268 2.48520 3.09382 3.19330 3.25700 3.29620 3.34157 3.67795 3.77814 3.92960 4.24093 4.34537 4.41157 4.53112 4.56223 4.59620 4.73739 4.96734 4.98136 5.03323 5.11034 5.13824 5.16752 5.19731 5.23657 5.28369 5.30007 5.37312 5.46637 5.49381 5.53618 5.60585 5.70669 5.77829 5.79905 5.86547 5.90666 5.97752 6.14561 6.22274 6.43236 6.74822 6.87149 7.57054 7.62767 7.87600 8.38661 8.72226 9.26965 10.89231 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.002797 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.464184 B =10008.339193 C =12192.369438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.161 4.161 3 C 0.077 3.923 4 H 0.097 0.903 5 C 0.127 3.873 6 N -0.726 5.726 7 C 0.531 3.469 8 O -0.524 6.524 9 C -0.151 4.151 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.675 5.675 20 C 0.135 3.865 21 C -0.037 4.037 22 O -0.187 6.187 23 C 0.195 3.805 24 C -0.059 4.059 25 N -0.486 5.486 26 C -0.013 4.013 27 C -0.069 4.069 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.405 0.595 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.346 0.654 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.941 -9.874 6.448 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.201 4.201 3 C -0.033 4.033 4 H 0.115 0.885 5 C 0.002 3.998 6 N -0.381 5.381 7 C 0.317 3.683 8 O -0.399 6.399 9 C -0.302 4.302 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.504 5.504 15 Si 0.744 3.256 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 N -0.307 5.307 20 C 0.007 3.993 21 C -0.091 4.091 22 O -0.073 6.073 23 C -0.012 4.012 24 C -0.117 4.117 25 N -0.217 5.217 26 C -0.134 4.134 27 C -0.126 4.126 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.240 0.760 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.166 0.834 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.298 -10.846 6.614 26.536 hybrid contribution -1.066 1.688 -0.096 1.999 sum -24.363 -9.158 6.518 26.832 Atomic orbital electron populations 1.21791 0.95232 1.02304 1.01776 1.22221 0.96600 0.97700 1.03555 1.21961 0.95337 0.93406 0.92618 0.88498 1.21310 0.91459 0.84984 1.02068 1.45817 1.07412 1.08854 1.76032 1.20293 0.81586 0.91038 0.75428 1.90690 1.55540 1.46160 1.47534 1.23505 1.06507 0.95370 1.04810 1.85356 0.92145 1.10749 1.95220 1.22835 0.95278 0.92425 1.57748 0.91018 1.24983 0.95067 0.98897 0.94628 1.70008 0.99362 1.34580 1.46436 0.86237 0.77322 0.83172 0.78840 1.19941 1.20837 1.19956 1.60489 1.17144 1.52647 1.00464 1.20333 1.02852 0.92487 0.83660 1.22917 0.92416 0.94808 0.98980 1.84461 1.45104 1.43007 1.34692 1.26257 0.88195 0.98647 0.88116 1.20286 1.02854 0.93005 0.95515 1.70342 1.18612 1.08627 1.24129 1.21480 0.97822 1.00427 0.93625 1.20094 0.94566 0.96285 1.01703 0.92190 0.93000 0.92182 0.90499 0.91255 0.91066 0.91894 0.76003 0.89373 0.89325 0.92177 0.83400 0.91233 0.88295 0.88892 0.88951 0.88198 0.90824 0.90500 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.52 37.16 0.35 -0.32 16 2 C -0.16 -0.90 5.15 -26.73 -0.14 -1.04 16 3 C 0.08 0.55 2.71 -67.71 -0.18 0.37 16 4 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 5 C 0.13 1.40 4.69 -4.04 -0.02 1.38 16 6 N -0.73 -9.99 5.39 -60.29 -0.32 -10.31 16 7 C 0.53 10.17 7.85 -10.99 -0.09 10.08 16 8 O -0.52 -12.08 15.86 5.56 0.09 -11.99 16 9 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 10 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 11 C -0.53 -15.46 9.50 30.94 0.29 -15.16 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 15 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 N -0.68 -5.22 5.78 -108.00 -0.62 -5.84 16 20 C 0.14 1.20 5.02 -4.98 -0.02 1.18 16 21 C -0.04 -0.42 6.95 -35.69 -0.25 -0.67 16 22 O -0.19 -2.50 10.78 5.35 0.06 -2.44 16 23 C 0.19 2.30 8.34 -12.94 -0.11 2.20 16 24 C -0.06 -0.46 10.51 36.01 0.38 -0.08 16 25 N -0.49 -6.10 11.29 -7.35 -0.08 -6.18 16 26 C -0.01 -0.14 7.11 -82.81 -0.59 -0.73 16 27 C -0.07 -0.49 10.05 36.01 0.36 -0.13 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.20 6.56 -51.93 -0.34 -0.14 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.40 6.29 -51.93 -0.33 0.07 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.76 6.57 -51.92 -0.34 0.42 16 35 H 0.40 4.89 8.14 -40.82 -0.33 4.56 16 36 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 37 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.35 2.24 7.49 -39.29 -0.29 1.95 16 40 H 0.07 0.47 6.16 -51.93 -0.32 0.15 16 41 H 0.10 1.08 6.16 -51.93 -0.32 0.76 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.35 7.18 -51.93 -0.37 -0.02 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -36.78 401.18 -8.49 -45.27 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.27 Total: 2.34 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 0.12 Total: -3.85 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.30 Total: -48.06 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.15 Total: -14.43 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.78 -8.49 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269371105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.352 kcal (2) G-P(sol) polarization free energy of solvation -36.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds