Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47078 * 2 1 4 4 H 1.09001 * 109.47296 * 54.95113 * 3 2 1 5 5 C 1.52999 * 109.47301 * 174.95439 * 3 2 1 6 6 N 1.46501 * 109.47521 * 174.99837 * 5 3 2 7 7 C 1.34769 * 120.00400 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99967 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00210 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47434 * 179.97438 * 9 7 6 11 11 C 1.76195 * 100.00308 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.38800 * 120.00015 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99923 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00210 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47166 * 89.99569 * 15 13 11 17 17 H 1.48493 * 109.47371 * 210.00099 * 15 13 11 18 18 H 1.48501 * 109.47302 * 330.00024 * 15 13 11 19 19 N 1.46905 * 109.46947 * 294.95224 * 3 2 1 20 20 C 1.46898 * 110.99981 * 294.39498 * 19 3 2 21 21 C 1.50703 * 109.47148 * 177.85583 * 20 19 3 22 22 O 1.34748 * 126.44631 * 269.69206 * 21 20 19 23 23 C 1.33967 * 107.75721 * 179.83864 * 22 21 20 24 24 C 1.50692 * 125.62153 * 180.18679 * 23 22 21 25 25 N 1.30260 * 108.75752 * 0.43187 * 23 22 21 26 26 C 1.34327 * 126.43607 * 90.00128 * 21 20 19 27 27 C 1.50694 * 126.17257 * 0.02562 * 26 21 20 28 28 H 1.08997 * 109.47227 * 55.81717 * 1 2 3 29 29 H 1.09001 * 109.47071 * 175.82511 * 1 2 3 30 30 H 1.09001 * 109.47230 * 295.81967 * 1 2 3 31 31 H 1.08996 * 109.47451 * 240.00023 * 2 1 3 32 32 H 1.09007 * 109.47576 * 119.99644 * 2 1 3 33 33 H 1.09003 * 109.47304 * 294.99992 * 5 3 2 34 34 H 1.09001 * 109.47372 * 54.99583 * 5 3 2 35 35 H 0.97001 * 119.99515 * 359.97438 * 6 5 3 36 36 H 1.09001 * 109.47242 * 299.99395 * 9 7 6 37 37 H 1.09001 * 109.47233 * 59.99371 * 9 7 6 38 38 H 0.97000 * 120.00050 * 179.97438 * 14 13 11 39 39 H 1.00898 * 110.99850 * 170.44258 * 19 3 2 40 40 H 1.09006 * 109.46799 * 57.85835 * 20 19 3 41 41 H 1.09006 * 109.47336 * 297.86029 * 20 19 3 42 42 H 1.09002 * 109.47125 * 270.30764 * 24 23 22 43 43 H 1.09000 * 109.47507 * 30.31008 * 24 23 22 44 44 H 1.09005 * 109.47446 * 150.31268 * 24 23 22 45 45 H 1.08998 * 109.47251 * 89.99827 * 27 26 21 46 46 H 1.08999 * 109.47252 * 210.00002 * 27 26 21 47 47 H 1.08997 * 109.47201 * 330.00113 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9818 0.8413 5 6 3.5647 1.4444 0.1269 6 7 4.0630 2.8169 0.0071 7 6 5.3856 3.0631 0.0878 8 8 6.1633 2.1485 0.2602 9 6 5.8981 4.4749 -0.0348 10 16 7.7019 4.4772 0.1151 11 6 8.0215 6.2009 -0.0609 12 1 7.2029 6.8893 -0.2104 13 6 9.3252 6.6741 -0.0074 14 7 9.5639 7.9619 -0.1384 15 14 10.7411 5.4833 0.2505 16 1 11.2321 5.0053 -1.0670 17 1 11.8429 6.1725 0.9690 18 1 10.2740 4.3254 1.0544 19 7 1.6523 2.0989 -1.2558 20 6 2.3279 1.4797 -2.4038 21 6 1.8665 2.1431 -3.6759 22 8 0.8203 1.7706 -4.4391 23 6 0.7469 2.6185 -5.4737 24 6 -0.2807 2.5725 -6.5749 25 7 1.7134 3.4861 -5.3737 26 6 2.4245 3.2136 -4.2652 27 6 3.6301 3.9720 -3.7733 28 1 -0.3633 0.5774 -0.8501 29 1 -0.3633 -1.0249 -0.0748 30 1 -0.3634 0.4476 0.9251 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8491 1.0381 1.0975 34 1 3.9959 0.8310 -0.6642 35 1 3.4411 3.5483 -0.1311 36 1 5.6134 4.8818 -1.0051 37 1 5.4673 5.0879 0.7568 38 1 10.4750 8.2926 -0.1007 39 1 1.8382 3.0899 -1.2181 40 1 2.0847 0.4177 -2.4390 41 1 3.4061 1.6023 -2.3004 42 1 0.0838 1.9418 -7.3858 43 1 -1.2123 2.1617 -6.1857 44 1 -0.4568 3.5807 -6.9500 45 1 4.5331 3.5355 -4.2002 46 1 3.5521 5.0157 -4.0780 47 1 3.6774 3.9136 -2.6859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269371106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = -25.147475 kcal Electronic energy + Delta-G solvation = -27595.947372 eV Core-core repulsion = 23713.388503 eV Total energy + Delta-G solvation = -3882.558869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.53312 -39.86536 -38.19050 -35.34699 -34.24777 -33.74928 -32.46734 -32.08804 -30.25675 -29.52886 -28.56251 -27.12413 -25.64097 -24.50688 -23.51980 -21.92615 -21.08276 -20.52222 -20.15463 -18.00962 -17.61781 -17.04892 -16.56697 -16.25625 -16.10200 -15.69816 -15.00498 -14.97070 -14.75966 -14.35796 -13.99949 -13.90251 -13.80319 -13.57756 -13.47917 -13.29135 -13.17752 -13.14442 -12.90152 -12.82694 -12.54733 -12.39690 -12.12259 -11.81203 -11.75561 -11.31038 -11.26942 -11.07274 -11.04001 -11.03114 -10.65254 -10.62702 -9.89517 -9.64514 -9.17285 -9.03790 -9.02668 -8.70209 -8.54803 -6.96204 -6.31669 -4.04065 1.18178 2.39280 2.45006 2.67642 2.85610 3.20829 3.30830 3.47504 3.56293 3.71705 3.83747 4.29940 4.30438 4.41442 4.58977 4.61532 4.70090 4.73789 4.78406 4.97527 5.00169 5.03782 5.06058 5.07479 5.14392 5.19440 5.28842 5.42342 5.47765 5.50583 5.51087 5.58411 5.61466 5.68860 5.70626 5.83644 5.86795 5.92220 5.94238 6.06655 6.19414 6.30443 6.45626 6.80913 7.41315 7.56231 7.91310 8.35583 8.38963 9.14351 10.77550 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.002818 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.253451 B = 9933.157322 C =11833.436067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.078 3.922 4 H 0.097 0.903 5 C 0.082 3.918 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.515 6.515 9 C -0.126 4.126 10 S -0.140 6.140 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.879 5.879 15 Si 0.856 3.144 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.236 1.236 19 N -0.672 5.672 20 C 0.136 3.864 21 C -0.046 4.046 22 O -0.195 6.195 23 C 0.188 3.812 24 C -0.056 4.056 25 N -0.480 5.480 26 C 0.001 3.999 27 C -0.075 4.075 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.395 0.605 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.344 0.656 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.017 -14.532 -6.065 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.033 4.033 4 H 0.115 0.885 5 C -0.044 4.044 6 N -0.396 5.396 7 C 0.317 3.683 8 O -0.389 6.389 9 C -0.276 4.276 10 S 0.086 5.914 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.160 1.160 19 N -0.304 5.304 20 C 0.008 3.992 21 C -0.099 4.099 22 O -0.082 6.082 23 C -0.019 4.019 24 C -0.113 4.113 25 N -0.211 5.211 26 C -0.119 4.119 27 C -0.133 4.133 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.229 0.771 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.163 0.837 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.084 -15.851 -6.271 27.897 hybrid contribution 0.357 1.059 0.362 1.174 sum -21.727 -14.792 -5.910 26.940 Atomic orbital electron populations 1.21655 0.94690 1.01271 1.02543 1.21529 0.97171 0.94162 1.02425 1.21972 0.91841 0.97201 0.92238 0.88545 1.22075 0.94922 0.84185 1.03172 1.45994 1.07797 1.08968 1.76821 1.20302 0.81446 0.91063 0.75442 1.90715 1.55400 1.46163 1.46604 1.23292 1.03263 0.95323 1.05737 1.84810 0.97866 1.13065 1.95639 1.22299 0.97250 0.89824 1.57551 0.89353 1.24711 0.98271 0.95033 0.93275 1.69936 1.21477 1.12540 1.47630 0.86744 0.82460 0.82492 0.80206 1.19193 1.19918 1.15956 1.60634 1.60660 1.07738 1.01395 1.20355 0.96732 0.99013 0.83132 1.22896 0.90499 0.99645 0.96896 1.84367 1.43100 1.49285 1.31417 1.26223 0.98105 0.86817 0.90799 1.20237 0.93891 1.05289 0.91874 1.70381 1.05872 1.25641 1.19208 1.21610 1.00275 0.96901 0.93157 1.20170 0.92408 1.00218 1.00469 0.91337 0.93242 0.93020 0.91644 0.91111 0.90719 0.91195 0.77089 0.88506 0.88427 0.91903 0.83682 0.88700 0.90657 0.89044 0.89408 0.88122 0.90254 0.90043 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.85 37.16 0.37 -0.58 16 2 C -0.11 -0.74 5.32 -26.73 -0.14 -0.88 16 3 C 0.08 0.54 2.71 -67.71 -0.18 0.35 16 4 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 5 C 0.08 0.77 4.46 -4.04 -0.02 0.76 16 6 N -0.74 -8.06 5.31 -60.29 -0.32 -8.38 16 7 C 0.53 8.65 7.85 -10.99 -0.09 8.57 16 8 O -0.51 -10.49 15.86 5.55 0.09 -10.40 16 9 C -0.13 -2.28 6.16 36.00 0.22 -2.06 16 10 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 11 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 12 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.32 13.97 55.49 0.78 -25.55 16 15 Si 0.86 21.56 27.74 -169.99 -4.71 16.85 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 19 N -0.67 -5.11 5.69 -107.98 -0.61 -5.72 16 20 C 0.14 1.20 5.00 -4.98 -0.02 1.17 16 21 C -0.05 -0.51 6.92 -35.69 -0.25 -0.76 16 22 O -0.19 -2.23 10.77 5.37 0.06 -2.18 16 23 C 0.19 2.01 8.34 -12.95 -0.11 1.90 16 24 C -0.06 -0.32 10.51 36.00 0.38 0.06 16 25 N -0.48 -6.26 11.29 -7.36 -0.08 -6.35 16 26 C 0.00 0.02 7.11 -82.81 -0.59 -0.57 16 27 C -0.08 -0.84 10.05 36.00 0.36 -0.48 16 28 H 0.07 0.54 7.64 -51.93 -0.40 0.14 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.44 6.28 -51.93 -0.33 0.11 16 32 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.72 6.68 -51.93 -0.35 0.38 16 35 H 0.39 3.32 7.23 -40.82 -0.30 3.02 16 36 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.34 2.55 7.48 -39.29 -0.29 2.26 16 40 H 0.09 0.79 6.26 -51.93 -0.33 0.46 16 41 H 0.08 0.71 6.06 -51.93 -0.31 0.40 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -35.32 399.40 -7.99 -43.31 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.35 Total: 2.11 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 0.14 Total: -4.28 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.24 Total: -45.99 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.15 Total: -12.58 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.85 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.32 -7.99 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269371106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.166 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds