Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47286 * 2 1 4 4 H 1.08999 * 109.46733 * 54.76892 * 3 2 1 5 5 C 1.52994 * 109.47188 * 294.77259 * 3 2 1 6 6 N 1.46502 * 109.47171 * 185.00296 * 5 3 2 7 7 C 1.34780 * 119.99882 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00058 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99582 * 179.97438 * 7 6 5 10 10 S 1.81003 * 109.46806 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99883 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99802 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99543 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00298 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99648 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47180 * 89.99994 * 15 13 11 17 17 H 1.48502 * 109.47175 * 209.99906 * 15 13 11 18 18 H 1.48502 * 109.46978 * 329.99803 * 15 13 11 19 19 N 1.46896 * 109.47077 * 174.76621 * 3 2 1 20 20 C 1.46895 * 111.00410 * 273.82070 * 19 3 2 21 21 C 1.50697 * 109.47355 * 180.71746 * 20 19 3 22 22 N 1.30259 * 125.62457 * 90.33664 * 21 20 19 23 23 C 1.34478 * 108.70501 * 180.14920 * 22 21 20 24 24 C 1.50695 * 126.16614 * 179.82706 * 23 22 21 25 25 C 1.34339 * 107.66540 * 359.56432 * 23 22 21 26 26 C 1.50694 * 126.43989 * 180.28615 * 25 23 22 27 27 O 1.33974 * 125.62021 * 269.99738 * 21 20 19 28 28 H 1.08997 * 109.46779 * 305.80462 * 1 2 3 29 29 H 1.09003 * 109.46642 * 65.80071 * 1 2 3 30 30 H 1.08993 * 109.47205 * 185.80435 * 1 2 3 31 31 H 1.08997 * 109.46817 * 239.99784 * 2 1 3 32 32 H 1.09006 * 109.46459 * 119.99788 * 2 1 3 33 33 H 1.09003 * 109.46742 * 304.99579 * 5 3 2 34 34 H 1.08996 * 109.47466 * 64.99382 * 5 3 2 35 35 H 0.96998 * 119.99587 * 359.97438 * 6 5 3 36 36 H 1.09003 * 109.46933 * 299.99456 * 9 7 6 37 37 H 1.08993 * 109.47001 * 60.00087 * 9 7 6 38 38 H 0.97009 * 120.00137 * 179.97438 * 14 13 11 39 39 H 1.00906 * 111.00173 * 37.77258 * 19 3 2 40 40 H 1.08996 * 109.47237 * 60.71060 * 20 19 3 41 41 H 1.09006 * 109.46945 * 300.71167 * 20 19 3 42 42 H 1.09009 * 109.46858 * 269.68801 * 24 23 22 43 43 H 1.08992 * 109.47651 * 29.68662 * 24 23 22 44 44 H 1.09003 * 109.47304 * 149.69293 * 24 23 22 45 45 H 1.09004 * 109.47419 * 89.99887 * 26 25 23 46 46 H 1.09000 * 109.46700 * 209.99479 * 26 25 23 47 47 H 1.08999 * 109.47473 * 329.99762 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6023 1.9826 0.8394 5 6 1.6403 2.1248 -1.3097 6 7 2.2294 3.4651 -1.3618 7 6 2.0113 4.2560 -2.4311 8 8 1.3278 3.8579 -3.3504 9 6 2.6169 5.6349 -2.4843 10 16 2.1453 6.4415 -4.0345 11 6 2.9643 7.9889 -3.8359 12 1 3.5398 8.1845 -2.9432 13 6 2.8707 8.9559 -4.8272 14 7 2.1698 8.7172 -5.9154 15 14 3.7397 10.5961 -4.6169 16 1 5.1105 10.5059 -5.1808 17 1 2.9797 11.6539 -5.3301 18 1 3.8196 10.9323 -3.1727 19 7 3.5036 1.4443 0.1263 20 6 3.9104 1.3953 1.5370 21 6 5.4145 1.4164 1.6271 22 7 6.1540 2.4847 1.7205 23 6 7.4449 2.1120 1.7765 24 6 8.6326 3.0331 1.8847 25 6 7.4845 0.7702 1.7242 26 6 8.7204 -0.0911 1.7634 27 8 6.2112 0.3393 1.6309 28 1 -0.3633 0.6012 0.8334 29 1 -0.3633 0.4213 -0.9374 30 1 -0.3633 -1.0223 0.1039 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.0032 1.5355 -2.1518 34 1 0.5544 2.2028 -1.3620 35 1 2.7764 3.7833 -0.6266 36 1 2.2533 6.2242 -1.6425 37 1 3.7028 5.5571 -2.4314 38 1 2.1041 9.3932 -6.6080 39 1 3.9125 0.6830 -0.3945 40 1 3.5319 0.4804 1.9927 41 1 3.5028 2.2587 2.0629 42 1 8.9801 3.2969 0.8857 43 1 8.3433 3.9378 2.4193 44 1 9.4337 2.5310 2.4272 45 1 8.9570 -0.3405 2.7978 46 1 8.5427 -1.0073 1.2003 47 1 9.5556 0.4515 1.3204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269371417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = -29.585405 kcal Electronic energy + Delta-G solvation = -26624.982688 eV Core-core repulsion = 22742.231375 eV Total energy + Delta-G solvation = -3882.751313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.62803 -39.31181 -37.94369 -35.45994 -34.52442 -33.46633 -32.63086 -32.35405 -29.87757 -29.51557 -28.41049 -26.40274 -25.38857 -24.41819 -23.76636 -22.04005 -21.08222 -20.84027 -20.06875 -17.77639 -17.23922 -17.09908 -16.38147 -16.14841 -15.86881 -15.54364 -14.82690 -14.75184 -14.73428 -14.45436 -14.30712 -13.72218 -13.65150 -13.53339 -13.44819 -13.36981 -13.15118 -12.93251 -12.76709 -12.70948 -12.46634 -12.35383 -12.18774 -11.98264 -11.71570 -11.36461 -11.19354 -11.01107 -11.00057 -10.94571 -10.70350 -10.69221 -9.73467 -9.26724 -8.99904 -8.99264 -8.77880 -8.64996 -8.13771 -6.40740 -6.14385 -3.83723 1.08296 2.26794 2.36046 3.15949 3.26859 3.28361 3.33519 3.39726 3.52831 3.79028 3.93383 4.28074 4.34813 4.44886 4.48215 4.52121 4.62793 4.78630 4.83557 4.89626 4.95037 5.05645 5.13776 5.19203 5.20604 5.30466 5.30899 5.36169 5.38919 5.47370 5.59860 5.61459 5.67864 5.69876 5.74164 5.79080 5.92013 5.94766 6.04439 6.06573 6.29485 6.41157 6.74115 6.90546 7.50174 7.67362 7.96461 8.43166 8.80711 9.31010 10.93069 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008644 B = 0.002573 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.475848 B =10881.734214 C =13708.041065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.077 3.923 4 H 0.090 0.910 5 C 0.135 3.865 6 N -0.725 5.725 7 C 0.531 3.469 8 O -0.526 6.526 9 C -0.151 4.151 10 S -0.063 6.063 11 C -0.533 4.533 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.869 5.869 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.272 1.272 19 N -0.676 5.676 20 C 0.160 3.840 21 C 0.189 3.811 22 N -0.455 5.455 23 C -0.013 4.013 24 C -0.073 4.073 25 C -0.052 4.052 26 C -0.066 4.066 27 O -0.204 6.204 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.404 0.596 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.267 0.733 39 H 0.350 0.650 40 H 0.061 0.939 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 -21.832 20.941 31.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 C -0.033 4.033 4 H 0.109 0.891 5 C 0.010 3.990 6 N -0.380 5.380 7 C 0.317 3.683 8 O -0.401 6.401 9 C -0.302 4.302 10 S 0.164 5.836 11 C -0.681 4.681 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.504 5.504 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 N -0.308 5.308 20 C 0.031 3.969 21 C -0.019 4.019 22 N -0.185 5.185 23 C -0.134 4.134 24 C -0.130 4.130 25 C -0.105 4.105 26 C -0.123 4.123 27 O -0.092 6.092 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.239 0.761 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.169 0.831 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.028 -21.173 19.216 29.443 hybrid contribution 1.723 -0.002 1.706 2.424 sum 8.751 -21.175 20.921 31.027 Atomic orbital electron populations 1.21777 0.94641 1.01973 1.02731 1.22200 0.97665 0.96617 1.02529 1.21967 0.86389 0.95686 0.99246 0.89148 1.21246 0.98012 0.83811 0.95958 1.45798 1.54419 1.15361 1.22388 1.20267 0.80162 0.86414 0.81477 1.90684 1.38302 1.74671 1.36458 1.23506 1.03720 0.95612 1.07342 1.85340 1.67806 1.13930 1.16533 1.22885 1.36669 1.00710 1.07839 0.90951 1.24987 0.95369 0.98783 0.94504 1.70026 1.38299 1.34737 1.07373 0.86178 0.79280 0.81717 0.78389 1.20316 1.20814 1.19682 1.60470 1.08929 1.52507 1.08940 1.20255 0.81641 1.03487 0.91554 1.25922 0.95456 0.78782 1.01691 1.70359 1.01867 1.29713 1.16549 1.21599 0.93475 0.92294 1.05985 1.20133 0.91943 0.97871 1.03033 1.23176 0.84181 0.94949 1.08222 1.20261 0.89852 0.98627 1.03575 1.84350 1.16637 1.38121 1.70054 0.92413 0.91740 0.92564 0.91091 0.91719 0.91828 0.91006 0.76124 0.89384 0.89282 0.92283 0.83109 0.92130 0.86607 0.90479 0.90402 0.90869 0.89929 0.90353 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.53 37.16 0.35 -0.62 16 2 C -0.15 -0.92 5.39 -26.73 -0.14 -1.06 16 3 C 0.08 0.59 2.22 -67.72 -0.15 0.44 16 4 H 0.09 0.62 7.77 -51.93 -0.40 0.22 16 5 C 0.13 1.56 5.01 -4.04 -0.02 1.54 16 6 N -0.73 -10.45 5.39 -60.30 -0.32 -10.77 16 7 C 0.53 10.50 7.85 -10.98 -0.09 10.42 16 8 O -0.53 -12.42 15.86 5.56 0.09 -12.33 16 9 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 10 S -0.06 -1.77 20.57 -107.50 -2.21 -3.98 16 11 C -0.53 -15.66 9.50 30.94 0.29 -15.37 16 12 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.78 13.22 55.49 0.73 -26.05 16 15 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 N -0.68 -5.57 5.68 -108.00 -0.61 -6.19 16 20 C 0.16 1.20 6.11 -4.98 -0.03 1.17 16 21 C 0.19 2.00 7.86 -12.95 -0.10 1.89 16 22 N -0.46 -5.74 11.29 -7.35 -0.08 -5.82 16 23 C -0.01 -0.14 7.11 -82.81 -0.59 -0.73 16 24 C -0.07 -0.56 10.05 36.00 0.36 -0.20 16 25 C -0.05 -0.49 7.39 -35.69 -0.26 -0.75 16 26 C -0.07 -0.34 10.04 36.00 0.36 0.02 16 27 O -0.20 -2.13 10.77 5.36 0.06 -2.08 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.48 6.98 -51.93 -0.36 0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.33 7.44 -51.93 -0.39 -0.05 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.86 6.96 -51.93 -0.36 0.50 16 35 H 0.40 5.17 8.14 -40.82 -0.33 4.84 16 36 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 37 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 38 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.35 2.85 8.46 -39.29 -0.33 2.52 16 40 H 0.06 0.33 7.45 -51.93 -0.39 -0.06 16 41 H 0.12 0.81 8.04 -51.93 -0.42 0.39 16 42 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.34 7.79 -51.93 -0.40 -0.07 16 LS Contribution 407.72 15.07 6.14 6.14 Total: -1.00 -37.50 407.72 -8.68 -46.19 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.56 Total: 2.21 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 0.11 Total: -4.27 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.29 Total: -48.83 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.15 Total: -14.41 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.21 Total: -3.98 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.50 -8.68 -46.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269371417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.602 kcal (2) G-P(sol) polarization free energy of solvation -37.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds