Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46908 * 109.47312 * 89.69230 * 7 6 5 9 9 C 1.46896 * 110.99640 * 66.04317 * 8 7 6 10 10 C 1.46895 * 110.99930 * 190.00197 * 8 7 6 11 11 C 1.52999 * 109.46852 * 170.00284 * 10 8 7 12 12 N 1.46507 * 109.47221 * 180.02562 * 11 10 8 13 13 C 1.46498 * 119.99714 * 269.99843 * 12 11 10 14 14 C 1.34773 * 120.00122 * 89.99155 * 12 11 10 15 15 O 1.21290 * 119.99791 * 0.02562 * 14 12 11 16 16 C 1.50701 * 119.99994 * 180.02562 * 14 12 11 17 17 S 1.81005 * 109.47026 * 180.02562 * 16 14 12 18 18 C 1.76200 * 99.99825 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99771 * 359.97438 * 18 17 16 20 20 C 1.38791 * 119.99845 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00267 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47419 * 59.99513 * 22 20 18 24 24 H 1.48505 * 109.47356 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47184 * 299.99759 * 22 20 18 26 26 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 27 27 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 28 28 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 29 29 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 31 31 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 32 32 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 34 34 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 35 35 H 1.09001 * 109.47225 * 60.00629 * 9 8 7 36 36 H 1.08999 * 109.46918 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47605 * 300.00214 * 9 8 7 38 38 H 1.09003 * 109.46747 * 289.99484 * 10 8 7 39 39 H 1.08997 * 109.47505 * 49.99846 * 10 8 7 40 40 H 1.09003 * 109.46792 * 299.99173 * 11 10 8 41 41 H 1.08997 * 109.47423 * 59.99512 * 11 10 8 42 42 H 1.08995 * 109.47137 * 89.99841 * 13 12 11 43 43 H 1.09002 * 109.46870 * 209.99824 * 13 12 11 44 44 H 1.09002 * 109.46939 * 329.99530 * 13 12 11 45 45 H 1.09003 * 109.46984 * 300.00400 * 16 14 12 46 46 H 1.08995 * 109.46760 * 60.00559 * 16 14 12 47 47 H 0.97000 * 120.00054 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5723 4.4362 -1.8146 9 6 4.8782 3.2505 -2.6260 10 6 5.0580 5.6598 -2.4662 11 6 6.5870 5.6380 -2.5170 12 7 7.0715 6.8587 -3.1663 13 6 7.2681 6.8876 -4.6178 14 6 7.3363 7.9549 -2.4285 15 8 7.1739 7.9308 -1.2267 16 6 7.8341 9.2107 -3.0965 17 16 8.0958 10.4951 -1.8482 18 6 8.6586 11.8107 -2.8763 19 1 8.7468 11.6630 -3.9425 20 6 8.9895 13.0365 -2.3157 21 7 8.8824 13.2164 -1.0162 22 14 9.5855 14.4316 -3.4057 23 1 8.5359 14.7644 -4.4021 24 1 9.8704 15.6257 -2.5700 25 1 10.8235 14.0140 -4.1116 26 8 2.2982 2.1758 -1.0840 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 2.1912 1.8686 2.1113 33 1 2.5770 4.4844 -2.4705 34 1 2.9194 5.4648 -1.0249 35 1 4.3406 3.3093 -3.5724 36 1 5.9502 3.2088 -2.8188 37 1 4.5709 2.3532 -2.0888 38 1 4.6616 5.7133 -3.4802 39 1 4.7256 6.5296 -1.8997 40 1 6.9835 5.5845 -1.5030 41 1 6.9194 4.7682 -3.0835 42 1 6.3477 7.2130 -5.1026 43 1 8.0723 7.5818 -4.8617 44 1 7.5305 5.8896 -4.9689 45 1 8.7750 9.0027 -3.6061 46 1 7.0961 9.5534 -3.8217 47 1 9.1133 14.0732 -0.6245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271961889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = -3.236133 kcal Electronic energy + Delta-G solvation = -26426.586687 eV Core-core repulsion = 22544.977965 eV Total energy + Delta-G solvation = -3881.608722 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.59768 -39.58555 -37.93470 -35.31875 -34.95372 -34.65385 -32.41377 -31.44093 -29.87433 -28.32833 -27.64910 -26.58308 -25.51799 -24.86065 -23.83072 -22.33114 -21.52150 -20.98125 -19.18134 -17.66528 -17.34269 -17.21635 -16.65461 -16.20815 -15.85679 -15.58209 -15.18309 -15.10280 -14.85145 -14.78409 -14.44784 -13.82968 -13.63060 -13.54796 -13.33588 -13.16477 -13.00043 -12.90193 -12.57322 -12.47712 -12.29756 -12.24871 -12.09922 -12.00247 -11.75995 -11.69471 -11.47647 -11.03149 -11.02897 -10.98004 -10.74571 -10.65821 -9.80011 -9.35680 -9.04461 -9.03411 -8.80423 -8.50643 -8.20769 -6.48297 -6.19704 -3.90483 1.11994 2.26596 2.44381 2.90669 3.06683 3.24356 3.25669 3.29895 3.52908 3.72763 3.87309 4.21882 4.28640 4.47612 4.63252 4.67188 4.71572 4.78737 4.90114 4.96204 5.00548 5.04089 5.10381 5.15167 5.19607 5.21387 5.26089 5.29840 5.32936 5.42258 5.50991 5.57486 5.60770 5.65322 5.66582 5.77114 5.80541 5.90640 5.98254 6.04390 6.14282 6.49749 6.56446 6.74237 7.52498 7.53457 7.60667 8.36407 8.57339 9.25229 10.87602 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.001706 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.138852 B =16409.093845 C =17043.623038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.037 4.037 3 C -0.049 4.049 4 C -0.039 4.039 5 N -0.461 5.461 6 C 0.198 3.802 7 C 0.154 3.846 8 N -0.533 5.533 9 C 0.018 3.982 10 C 0.044 3.956 11 C 0.123 3.877 12 N -0.626 5.626 13 C 0.081 3.919 14 C 0.531 3.469 15 O -0.509 6.509 16 C -0.150 4.150 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 O -0.203 6.203 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.182 0.818 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.343 -27.637 -5.609 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 C -0.103 4.103 4 C -0.178 4.178 5 N -0.189 5.189 6 C -0.009 4.009 7 C 0.025 3.975 8 N -0.258 5.258 9 C -0.130 4.130 10 C -0.085 4.085 11 C -0.001 4.001 12 N -0.362 5.362 13 C -0.063 4.063 14 C 0.319 3.681 15 O -0.382 6.382 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 O -0.090 6.090 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.199 0.801 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.127 -27.066 -2.908 30.670 hybrid contribution -0.069 0.341 -3.276 3.294 sum -14.196 -26.725 -6.184 30.887 Atomic orbital electron populations 1.21808 0.93710 1.02554 1.02774 1.20047 0.96436 0.86541 1.04400 1.23467 1.05949 0.96162 0.84692 1.23121 1.04371 0.89944 1.00354 1.70478 1.16905 1.22383 1.09162 1.25984 0.98809 0.85777 0.90349 1.20404 0.88777 0.92193 0.96104 1.61767 1.13056 1.03674 1.47324 1.22537 1.02155 0.92909 0.95407 1.22528 0.96748 0.91891 0.97311 1.21315 0.92436 0.85986 1.00348 1.47845 1.67850 1.12685 1.07863 1.21776 1.01775 1.02668 0.80035 1.20381 0.76656 0.83844 0.87196 1.90724 1.50541 1.82759 1.14195 1.23563 1.03489 0.97718 1.05316 1.85429 1.86219 1.03492 1.08241 1.22819 1.51612 0.98595 0.95437 0.91019 1.24981 0.95091 0.98064 0.95382 1.70008 1.45299 1.24854 1.10055 0.86237 0.79179 0.80315 0.79828 1.19968 1.20810 1.19952 1.84383 1.64233 1.23684 1.36718 0.91990 0.92328 0.91352 0.89955 0.88466 0.80097 0.91772 0.86168 0.95065 0.90481 0.91638 0.94220 0.89371 0.88752 0.90909 0.92890 0.90520 0.91502 0.89264 0.89300 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.04 -0.19 6.49 -27.88 -0.18 -0.37 16 3 C -0.05 -0.44 6.64 -35.69 -0.24 -0.68 16 4 C -0.04 -0.40 11.80 -17.77 -0.21 -0.61 16 5 N -0.46 -6.06 11.29 -11.10 -0.13 -6.18 16 6 C 0.20 2.29 6.91 -12.95 -0.09 2.20 16 7 C 0.15 1.53 5.59 -4.97 -0.03 1.50 16 8 N -0.53 -5.70 4.75 -244.37 -1.16 -6.86 16 9 C 0.02 0.15 9.17 60.06 0.55 0.71 16 10 C 0.04 0.48 5.28 -3.83 -0.02 0.46 16 11 C 0.12 1.49 5.38 -4.04 -0.02 1.46 16 12 N -0.63 -8.63 2.87 -181.57 -0.52 -9.15 16 13 C 0.08 0.80 10.29 59.85 0.62 1.42 16 14 C 0.53 10.06 7.69 -10.99 -0.08 9.97 16 15 O -0.51 -11.69 15.44 5.55 0.09 -11.60 16 16 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 22 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 O -0.20 -2.15 10.16 5.35 0.05 -2.09 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.18 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.12 1.21 7.93 -51.93 -0.41 0.80 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.60 6.30 -51.93 -0.33 0.27 16 37 H 0.06 0.61 6.80 -51.93 -0.35 0.26 16 38 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.09 1.41 7.42 -51.93 -0.39 1.02 16 41 H 0.07 0.68 6.23 -51.93 -0.32 0.36 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 44 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 45 H 0.09 1.67 7.40 -51.91 -0.38 1.28 16 46 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -36.52 403.89 -8.59 -45.11 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.53 Total: -2.27 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 1.03 Total: -0.04 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -1.07 Total: -47.69 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.14 Total: -13.69 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.52 -8.59 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271961889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.873 kcal (2) G-P(sol) polarization free energy of solvation -36.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds