Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46908 * 109.47312 * 89.69230 * 7 6 5 9 9 C 1.46896 * 110.99640 * 66.04317 * 8 7 6 10 10 C 1.46895 * 110.99930 * 190.00197 * 8 7 6 11 11 C 1.52999 * 109.46852 * 170.00284 * 10 8 7 12 12 N 1.46507 * 109.47221 * 180.02562 * 11 10 8 13 13 C 1.46498 * 119.99714 * 269.99843 * 12 11 10 14 14 C 1.34773 * 120.00122 * 89.99155 * 12 11 10 15 15 O 1.21290 * 119.99791 * 0.02562 * 14 12 11 16 16 C 1.50701 * 119.99994 * 180.02562 * 14 12 11 17 17 S 1.81005 * 109.47026 * 180.02562 * 16 14 12 18 18 C 1.76200 * 99.99825 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99771 * 359.97438 * 18 17 16 20 20 C 1.38791 * 119.99845 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00267 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47419 * 59.99513 * 22 20 18 24 24 H 1.48505 * 109.47356 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47184 * 299.99759 * 22 20 18 26 26 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 27 27 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 28 28 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 29 29 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 31 31 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 32 32 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 34 34 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 35 35 H 1.09001 * 109.47225 * 60.00629 * 9 8 7 36 36 H 1.08999 * 109.46918 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47605 * 300.00214 * 9 8 7 38 38 H 1.09003 * 109.46747 * 289.99484 * 10 8 7 39 39 H 1.08997 * 109.47505 * 49.99846 * 10 8 7 40 40 H 1.09003 * 109.46792 * 299.99173 * 11 10 8 41 41 H 1.08997 * 109.47423 * 59.99512 * 11 10 8 42 42 H 1.08995 * 109.47137 * 89.99841 * 13 12 11 43 43 H 1.09002 * 109.46870 * 209.99824 * 13 12 11 44 44 H 1.09002 * 109.46939 * 329.99530 * 13 12 11 45 45 H 1.09003 * 109.46984 * 300.00400 * 16 14 12 46 46 H 1.08995 * 109.46760 * 60.00559 * 16 14 12 47 47 H 0.97000 * 120.00054 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5723 4.4362 -1.8146 9 6 4.8782 3.2505 -2.6260 10 6 5.0580 5.6598 -2.4662 11 6 6.5870 5.6380 -2.5170 12 7 7.0715 6.8587 -3.1663 13 6 7.2681 6.8876 -4.6178 14 6 7.3363 7.9549 -2.4285 15 8 7.1739 7.9308 -1.2267 16 6 7.8341 9.2107 -3.0965 17 16 8.0958 10.4951 -1.8482 18 6 8.6586 11.8107 -2.8763 19 1 8.7468 11.6630 -3.9425 20 6 8.9895 13.0365 -2.3157 21 7 8.8824 13.2164 -1.0162 22 14 9.5855 14.4316 -3.4057 23 1 8.5359 14.7644 -4.4021 24 1 9.8704 15.6257 -2.5700 25 1 10.8235 14.0140 -4.1116 26 8 2.2982 2.1758 -1.0840 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 2.1912 1.8686 2.1113 33 1 2.5770 4.4844 -2.4705 34 1 2.9194 5.4648 -1.0249 35 1 4.3406 3.3093 -3.5724 36 1 5.9502 3.2088 -2.8188 37 1 4.5709 2.3532 -2.0888 38 1 4.6616 5.7133 -3.4802 39 1 4.7256 6.5296 -1.8997 40 1 6.9835 5.5845 -1.5030 41 1 6.9194 4.7682 -3.0835 42 1 6.3477 7.2130 -5.1026 43 1 8.0723 7.5818 -4.8617 44 1 7.5305 5.8896 -4.9689 45 1 8.7750 9.0027 -3.6061 46 1 7.0961 9.5534 -3.8217 47 1 9.1133 14.0732 -0.6245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271961889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = -30.813027 kcal Electronic energy + Delta-G solvation = -26427.782511 eV Core-core repulsion = 22544.977965 eV Total energy + Delta-G solvation = -3882.804546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.37748 -40.90336 -38.85312 -36.53835 -35.77379 -35.18148 -34.57226 -32.45767 -30.90784 -29.45660 -28.33183 -27.67854 -27.47445 -25.77538 -24.47997 -23.16346 -22.32068 -21.74850 -20.60105 -19.52249 -18.19904 -18.01797 -17.97094 -17.28409 -16.87934 -16.86042 -16.46880 -16.18934 -16.00793 -15.78046 -15.36535 -15.12172 -14.67887 -14.40369 -14.31019 -14.19062 -14.14089 -13.90799 -13.54947 -13.46154 -13.22830 -13.15195 -13.06943 -12.91188 -12.84954 -12.75068 -12.61740 -12.58237 -12.34420 -12.11754 -11.91066 -11.69945 -11.44852 -11.11514 -10.88996 -10.24764 -9.79551 -9.76959 -9.42046 -8.66173 -8.32871 -6.11617 0.36196 1.26469 1.44951 1.45284 1.51674 1.57856 1.60878 1.66536 2.10183 2.29088 2.89200 3.01092 3.09097 3.29158 3.69574 3.71895 3.90226 3.99556 4.00869 4.07004 4.15900 4.23350 4.27981 4.31855 4.33807 4.40279 4.48026 4.50016 4.52768 4.58221 4.70610 4.72004 4.82532 4.90634 4.92784 4.96260 4.97938 5.02422 5.18723 5.26945 5.31629 5.42545 5.53020 5.76718 5.89777 6.20718 6.28207 6.74340 7.07955 7.16867 8.76097 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.001706 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.138852 B =16409.093845 C =17043.623038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.035 4.035 3 C -0.040 4.040 4 C -0.064 4.064 5 N -0.502 5.502 6 C 0.187 3.813 7 C 0.155 3.845 8 N -0.552 5.552 9 C 0.022 3.978 10 C 0.055 3.945 11 C 0.124 3.876 12 N -0.610 5.610 13 C 0.071 3.929 14 C 0.529 3.471 15 O -0.563 6.563 16 C -0.122 4.122 17 S -0.156 6.156 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.261 1.261 26 O -0.207 6.207 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.201 0.799 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.606 -29.536 -8.945 34.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.072 4.072 3 C -0.093 4.093 4 C -0.202 4.202 5 N -0.232 5.232 6 C -0.020 4.020 7 C 0.027 3.973 8 N -0.278 5.278 9 C -0.126 4.126 10 C -0.073 4.073 11 C 0.001 3.999 12 N -0.345 5.345 13 C -0.071 4.071 14 C 0.316 3.684 15 O -0.441 6.441 16 C -0.274 4.274 17 S 0.071 5.929 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 O -0.094 6.094 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.137 0.863 32 H 0.217 0.783 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.130 0.870 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.403 -29.020 -6.301 33.005 hybrid contribution -0.051 0.726 -2.258 2.373 sum -14.455 -28.295 -8.560 32.906 Atomic orbital electron populations 1.21797 0.93040 1.03689 1.02045 1.20289 0.96836 0.84140 1.05966 1.24216 1.04049 0.97192 0.83839 1.23525 1.05305 0.89529 1.01828 1.70437 1.18185 1.24197 1.10340 1.26164 0.99206 0.86434 0.90198 1.20413 0.88780 0.91304 0.96793 1.61674 1.13617 1.04133 1.48363 1.22541 1.02963 0.91416 0.95659 1.22307 0.95850 0.91105 0.98060 1.21426 0.93117 0.86217 0.99169 1.47813 1.65806 1.11396 1.09448 1.22141 1.02812 1.05113 0.77041 1.20204 0.76752 0.84744 0.86672 1.90710 1.53221 1.83704 1.16443 1.23377 1.05135 0.95863 1.02981 1.85651 1.86721 1.07165 1.13386 1.23167 1.51481 0.98882 0.95848 0.89795 1.26137 0.94962 1.01155 0.96892 1.70187 1.46596 1.25673 1.12371 0.85001 0.79104 0.76159 0.77702 1.18584 1.20506 1.18569 1.84387 1.64169 1.23524 1.37294 0.92367 0.93438 0.89267 0.88917 0.86320 0.78253 0.89387 0.87310 0.93199 0.89490 0.92601 0.91681 0.92530 0.92195 0.87009 0.91021 0.90663 0.87871 0.87307 0.87340 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 71.98 0.71 -0.31 16 2 C -0.04 -0.28 6.49 29.85 0.19 -0.09 16 3 C -0.04 -0.68 6.64 24.79 0.16 -0.51 16 4 C -0.06 -1.31 11.80 83.40 0.98 -0.33 16 5 N -0.50 -13.66 11.29 -303.82 -3.43 -17.09 16 6 C 0.19 4.37 6.91 88.34 0.61 4.98 16 7 C 0.16 3.09 5.59 85.55 0.48 3.56 16 8 N -0.55 -11.41 4.75 -927.05 -4.41 -15.82 16 9 C 0.02 0.32 9.17 127.69 1.17 1.50 16 10 C 0.06 1.17 5.28 86.30 0.46 1.62 16 11 C 0.12 2.82 5.38 86.38 0.46 3.29 16 12 N -0.61 -15.74 2.87 -846.74 -2.43 -18.17 16 13 C 0.07 1.11 10.29 127.77 1.31 2.43 16 14 C 0.53 20.09 7.69 87.66 0.67 20.77 16 15 O -0.56 -27.12 15.44 -3.06 -0.05 -27.16 16 16 C -0.12 -4.91 4.71 71.24 0.34 -4.57 16 17 S -0.16 -8.82 20.57 -56.49 -1.16 -9.99 16 18 C -0.55 -31.31 9.50 67.95 0.65 -30.66 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.76 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 22 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 O -0.21 -4.24 10.16 -3.76 -0.04 -4.28 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.09 1.27 8.12 -2.39 -0.02 1.25 16 34 H 0.11 2.34 7.93 -2.39 -0.02 2.33 16 35 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.09 1.09 6.30 -2.39 -0.02 1.08 16 37 H 0.06 0.96 6.80 -2.39 -0.02 0.94 16 38 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 39 H 0.06 1.57 7.93 -2.39 -0.02 1.55 16 40 H 0.06 1.83 7.42 -2.39 -0.02 1.81 16 41 H 0.11 1.69 6.23 -2.39 -0.01 1.68 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 1.26 6.44 -2.39 -0.02 1.24 16 44 H 0.10 0.96 7.89 -2.39 -0.02 0.94 16 45 H 0.11 3.91 7.40 -2.39 -0.02 3.90 16 46 H 0.11 3.90 8.11 -2.40 -0.02 3.88 16 47 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -84.69 403.89 0.42 -84.27 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.96 Total: 16.02 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 8.67 Total: 2.91 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -9.98 Total: -107.41 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.09 Total: -31.45 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.99 kcal Total: -84.69 0.42 -84.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271961889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.452 kcal (2) G-P(sol) polarization free energy of solvation -84.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds