Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46867 * 2 1 4 4 C 1.52995 * 109.47003 * 120.00097 * 2 1 3 5 5 C 1.50710 * 109.47133 * 174.99998 * 4 2 1 6 6 N 1.29426 * 124.80139 * 89.97506 * 5 4 2 7 7 C 1.30944 * 117.36012 * 180.02562 * 6 5 4 8 8 C 1.35661 * 114.19032 * 359.97438 * 7 6 5 9 9 C 1.46681 * 126.12717 * 180.02562 * 8 7 6 10 10 O 1.21693 * 120.00380 * 7.71330 * 9 8 7 11 11 N 1.34785 * 120.00190 * 187.71106 * 9 8 7 12 12 C 1.46502 * 119.99390 * 2.84028 * 11 9 8 13 13 C 1.46492 * 120.00205 * 182.84195 * 11 9 8 14 14 C 1.52998 * 109.47363 * 89.99874 * 13 11 9 15 15 H 1.08998 * 109.47232 * 60.00297 * 14 13 11 16 16 O 1.42900 * 109.47159 * 299.99746 * 14 13 11 17 17 C 1.53000 * 109.47173 * 179.97438 * 14 13 11 18 18 N 1.46495 * 109.47302 * 184.99785 * 17 14 13 19 19 C 1.36940 * 120.00275 * 179.72183 * 18 17 14 20 20 H 1.08001 * 119.99775 * 0.28482 * 19 18 17 21 21 C 1.38807 * 120.00124 * 180.27354 * 19 18 17 22 22 N 1.31627 * 120.00242 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00019 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.46939 * 60.00310 * 23 21 19 25 25 H 1.48502 * 109.46910 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47006 * 300.00087 * 23 21 19 27 27 S 1.70949 * 124.80295 * 270.29117 * 5 4 2 28 28 H 1.09004 * 109.47148 * 299.99927 * 1 2 3 29 29 H 1.08998 * 109.47606 * 59.99794 * 1 2 3 30 30 H 1.09006 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46938 * 240.00481 * 2 1 3 32 32 H 1.09004 * 109.46707 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47259 * 299.99693 * 3 2 1 34 34 H 1.08999 * 109.46948 * 60.00488 * 3 2 1 35 35 H 1.09003 * 109.47247 * 54.99931 * 4 2 1 36 36 H 1.09000 * 109.47469 * 295.00188 * 4 2 1 37 37 H 1.08003 * 122.90078 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.46639 * 273.87738 * 12 11 9 39 39 H 1.08993 * 109.47694 * 33.87671 * 12 11 9 40 40 H 1.08997 * 109.46683 * 153.88661 * 12 11 9 41 41 H 1.09004 * 109.47363 * 329.99689 * 13 11 9 42 42 H 1.09003 * 109.47101 * 209.99952 * 13 11 9 43 43 H 0.96704 * 114.00068 * 299.99885 * 16 14 13 44 44 H 1.09004 * 109.47352 * 65.00018 * 17 14 13 45 45 H 1.08997 * 109.47254 * 305.00038 * 17 14 13 46 46 H 0.97002 * 120.00000 * 0.02562 * 18 17 14 47 47 H 0.96992 * 119.99893 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1889 6 7 4.3654 0.0501 1.6615 7 6 5.6455 -0.1917 1.5289 8 6 5.9284 -1.3596 0.8995 9 6 7.2674 -1.8860 0.6141 10 8 8.2494 -1.3318 1.0719 11 7 7.4104 -2.9835 -0.1551 12 6 6.2331 -3.6142 -0.7572 13 6 8.7428 -3.5456 -0.3890 14 6 9.0585 -4.5777 0.6953 15 1 8.3169 -5.3759 0.6642 16 8 9.0260 -3.9470 1.9772 17 6 10.4498 -5.1653 0.4506 18 7 10.7042 -6.2369 1.4165 19 6 11.8919 -6.9180 1.3866 20 1 12.6429 -6.6619 0.6540 21 6 12.1306 -7.9372 2.2982 22 7 11.2152 -8.2495 3.1910 23 14 13.7510 -8.8657 2.2579 24 1 14.8711 -7.9164 2.4799 25 1 13.7570 -9.8975 3.3260 26 1 13.9128 -9.5219 0.9356 27 16 4.3990 -2.1274 0.4797 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6053 -1.7198 1.2951 36 1 1.7516 -0.1584 2.1370 37 1 6.4100 0.4803 1.8903 38 1 5.7951 -4.3171 -0.0485 39 1 5.4997 -2.8485 -1.0097 40 1 6.5286 -4.1466 -1.6613 41 1 9.4845 -2.7475 -0.3580 42 1 8.7676 -4.0268 -1.3668 43 1 9.6618 -3.2251 2.0766 44 1 11.2003 -4.3837 0.5692 45 1 10.5014 -5.5680 -0.5609 46 1 10.0296 -6.4671 2.0744 47 1 11.3819 -8.9619 3.8277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278838028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = -33.232443 kcal Electronic energy + Delta-G solvation = -27162.831782 eV Core-core repulsion = 23279.922322 eV Total energy + Delta-G solvation = -3882.909460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45550 -39.62744 -37.31379 -36.70073 -35.43508 -33.98763 -31.67884 -31.17212 -29.66747 -28.39290 -27.54431 -27.18801 -25.61293 -24.35072 -22.95101 -21.44855 -20.97857 -20.80319 -19.00016 -18.65705 -17.14855 -16.91421 -16.61730 -16.25146 -15.64578 -15.38243 -15.28587 -15.06284 -14.60987 -14.40963 -14.26931 -13.96452 -13.79186 -13.50157 -13.29078 -13.11095 -12.94051 -12.79322 -12.62972 -12.43300 -12.29811 -12.15531 -11.73340 -11.59114 -11.53939 -11.35356 -11.18436 -10.93101 -10.79138 -10.70186 -10.23785 -10.17612 -9.78888 -9.76866 -9.66704 -9.56753 -9.15870 -8.87713 -8.57741 -6.90686 -5.73246 -3.02854 0.03318 0.93511 1.35409 2.27729 2.74475 3.08774 3.45319 3.49365 3.50878 3.73047 4.29782 4.35477 4.42280 4.51908 4.57990 4.66435 4.84810 4.91550 4.94871 5.05934 5.09193 5.11516 5.16167 5.25371 5.26050 5.34100 5.35937 5.46535 5.50940 5.53701 5.63313 5.67717 5.69801 5.82398 5.88736 5.96193 5.98752 6.20058 6.34356 6.52449 6.73803 7.10035 7.42122 7.69693 7.97153 8.18786 8.44969 9.56086 10.13991 10.49522 11.49077 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029197 B = 0.001980 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.782620 B =14135.243105 C =14326.044254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.045 4.045 5 C 0.034 3.966 6 N -0.478 5.478 7 C 0.120 3.880 8 C -0.291 4.291 9 C 0.601 3.399 10 O -0.520 6.520 11 N -0.603 5.603 12 C 0.063 3.937 13 C 0.087 3.913 14 C 0.085 3.915 15 H 0.096 0.904 16 O -0.548 6.548 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.243 4.243 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 S 0.189 5.811 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.186 0.814 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.375 0.625 44 H 0.022 0.978 45 H 0.025 0.975 46 H 0.388 0.612 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.601 17.130 -11.094 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.085 4.085 5 C -0.240 4.240 6 N -0.192 5.192 7 C -0.038 4.038 8 C -0.415 4.415 9 C 0.388 3.612 10 O -0.398 6.398 11 N -0.335 5.335 12 C -0.082 4.082 13 C -0.036 4.036 14 C 0.025 3.975 15 H 0.114 0.886 16 O -0.353 6.353 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 S 0.447 5.553 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.203 0.797 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.222 0.778 44 H 0.040 0.960 45 H 0.042 0.958 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -23.948 16.452 -11.027 31.077 hybrid contribution 1.770 0.219 0.420 1.833 sum -22.178 16.671 -10.606 29.703 Atomic orbital electron populations 1.21836 0.94230 1.02051 1.02307 1.21121 0.96119 0.97017 0.96741 1.21850 1.01804 0.95104 1.01698 1.20471 0.85046 1.02438 1.00565 1.27894 1.01690 0.95822 0.98564 1.66302 1.02057 1.30367 1.20437 1.22157 0.92364 0.94426 0.94822 1.25745 0.97502 1.03004 1.15253 1.16649 0.86370 0.79869 0.78296 1.90813 1.38610 1.59109 1.51264 1.47468 1.08214 1.27931 1.49888 1.22079 0.87712 0.98539 0.99894 1.22363 0.83191 0.98199 0.99874 1.22503 0.98512 0.93400 0.83124 0.88589 1.86552 1.63272 1.52791 1.32697 1.21230 0.92857 0.92030 0.94100 1.42234 1.18948 1.38344 1.37450 1.19178 0.93665 1.11507 1.13102 0.91300 1.24767 0.98209 0.99633 0.98325 1.69674 1.33923 1.33065 1.21188 0.86251 0.83397 0.79438 0.76975 1.21254 1.21663 1.21291 1.84332 0.95894 1.23530 1.51501 0.92300 0.92224 0.92395 0.90988 0.92179 0.92837 0.92323 0.89420 0.88620 0.79729 0.91238 0.90975 0.88898 0.89035 0.89225 0.77782 0.96042 0.95760 0.77750 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.19 37.16 0.34 -0.27 16 2 C -0.09 -0.49 2.91 -90.62 -0.26 -0.76 16 3 C -0.15 -0.98 8.99 37.16 0.33 -0.64 16 4 C -0.04 -0.28 5.27 -27.88 -0.15 -0.43 16 5 C 0.03 0.31 5.88 -13.29 -0.08 0.23 16 6 N -0.48 -5.34 9.74 -11.50 -0.11 -5.45 16 7 C 0.12 1.42 11.10 -18.85 -0.21 1.22 16 8 C -0.29 -3.49 6.23 -37.10 -0.23 -3.72 16 9 C 0.60 8.46 7.11 -12.85 -0.09 8.37 16 10 O -0.52 -8.79 15.42 0.38 0.01 -8.79 16 11 N -0.60 -7.29 2.83 -183.13 -0.52 -7.81 16 12 C 0.06 0.53 8.98 59.85 0.54 1.07 16 13 C 0.09 1.10 5.20 -4.05 -0.02 1.08 16 14 C 0.09 1.42 3.27 -26.73 -0.09 1.33 16 15 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 16 O -0.55 -10.44 12.16 -40.05 -0.49 -10.92 16 17 C 0.13 2.53 5.90 -4.04 -0.02 2.50 16 18 N -0.73 -18.92 5.55 -59.91 -0.33 -19.26 16 19 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 23 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 S 0.19 1.61 18.14 -107.50 -1.95 -0.34 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.51 6.80 -51.93 -0.35 0.16 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.19 2.09 8.06 -52.48 -0.42 1.67 16 38 H 0.07 0.59 7.81 -51.93 -0.41 0.18 16 39 H 0.07 0.53 4.64 -24.08 -0.11 0.42 16 40 H 0.09 0.59 7.85 -51.93 -0.41 0.18 16 41 H 0.09 1.23 7.38 -51.93 -0.38 0.85 16 42 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 43 H 0.37 6.70 8.54 45.56 0.39 7.09 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.39 10.94 7.67 -40.82 -0.31 10.63 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -35.17 395.58 -8.53 -43.69 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.61 Total: 10.99 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.19 Total: 2.38 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.24 Total: -60.72 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.48 Total: -19.71 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.95 Total: -0.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.17 -8.53 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278838028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.462 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds