Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47389 * 2 1 4 4 C 1.53008 * 109.46993 * 119.99746 * 2 1 3 5 5 C 1.50701 * 109.47123 * 174.99516 * 4 2 1 6 6 N 1.29432 * 124.79937 * 90.03029 * 5 4 2 7 7 C 1.30943 * 117.36167 * 179.97438 * 6 5 4 8 8 C 1.35657 * 114.18941 * 359.97438 * 7 6 5 9 9 C 1.46688 * 126.12923 * 180.02562 * 8 7 6 10 10 O 1.21689 * 119.99887 * 7.65808 * 9 8 7 11 11 N 1.34776 * 120.00317 * 187.65864 * 9 8 7 12 12 C 1.46504 * 119.99728 * 2.85872 * 11 9 8 13 13 C 1.46498 * 119.99971 * 182.86401 * 11 9 8 14 14 C 1.53005 * 109.46997 * 90.00313 * 13 11 9 15 15 H 1.09002 * 109.46670 * 304.99433 * 14 13 11 16 16 O 1.42898 * 109.47287 * 64.99754 * 14 13 11 17 17 C 1.53003 * 109.47077 * 184.99950 * 14 13 11 18 18 N 1.46495 * 109.47353 * 179.97438 * 17 14 13 19 19 C 1.36928 * 120.00315 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99934 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00488 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99540 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00309 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47489 * 89.99624 * 23 21 19 25 25 H 1.48497 * 109.47317 * 209.99516 * 23 21 19 26 26 H 1.48497 * 109.47023 * 329.99904 * 23 21 19 27 27 S 1.70946 * 124.80765 * 270.29938 * 5 4 2 28 28 H 1.09001 * 109.47102 * 300.00587 * 1 2 3 29 29 H 1.09006 * 109.46898 * 60.00166 * 1 2 3 30 30 H 1.08999 * 109.47475 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47616 * 239.99483 * 2 1 3 32 32 H 1.08996 * 109.47095 * 59.99891 * 3 2 1 33 33 H 1.09003 * 109.47160 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46924 * 299.99157 * 3 2 1 35 35 H 1.09001 * 109.46834 * 54.99527 * 4 2 1 36 36 H 1.09002 * 109.47150 * 294.99878 * 4 2 1 37 37 H 1.08001 * 122.90436 * 180.02562 * 7 6 5 38 38 H 1.08988 * 109.47447 * 274.43371 * 12 11 9 39 39 H 1.09000 * 109.46934 * 34.44010 * 12 11 9 40 40 H 1.08997 * 109.46758 * 154.42880 * 12 11 9 41 41 H 1.08992 * 109.47519 * 329.99741 * 13 11 9 42 42 H 1.09007 * 109.46631 * 209.99559 * 13 11 9 43 43 H 0.96694 * 114.00524 * 60.00241 * 16 14 13 44 44 H 1.08998 * 109.46750 * 299.99770 * 17 14 13 45 45 H 1.09006 * 109.47002 * 59.99091 * 17 14 13 46 46 H 0.97002 * 119.99586 * 359.97438 * 18 17 14 47 47 H 0.97005 * 119.99575 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8295 1.1890 6 7 4.3654 0.0496 1.6625 7 6 5.6455 -0.1926 1.5307 8 6 5.9283 -1.3605 0.9010 9 6 7.2674 -1.8873 0.6164 10 8 8.2493 -1.3331 1.0741 11 7 7.4103 -2.9852 -0.1522 12 6 6.2332 -3.6158 -0.7547 13 6 8.7427 -3.5481 -0.3850 14 6 9.0572 -4.5799 0.7002 15 1 8.9451 -4.1200 1.6821 16 8 8.1555 -5.6825 0.5847 17 6 10.4944 -5.0764 0.5306 18 7 10.7958 -6.0639 1.5700 19 6 12.0317 -6.6513 1.6186 20 1 12.7842 -6.3870 0.8904 21 6 12.3171 -7.5874 2.6031 22 7 11.3998 -7.9099 3.4901 23 14 14.0033 -8.3882 2.6697 24 1 14.9029 -7.5773 3.5290 25 1 13.8798 -9.7560 3.2347 26 1 14.5679 -8.4681 1.2986 27 16 4.3989 -2.1275 0.4797 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6052 -1.7197 1.2953 36 1 1.7516 -0.1582 2.1371 37 1 6.4100 0.4789 1.8927 38 1 5.7887 -4.3108 -0.0425 39 1 5.5045 -2.8489 -1.0172 40 1 6.5306 -4.1568 -1.6530 41 1 9.4847 -2.7503 -0.3538 42 1 8.7679 -4.0297 -1.3625 43 1 8.2007 -6.1402 -0.2658 44 1 10.6065 -5.5361 -0.4513 45 1 11.1822 -4.2353 0.6186 46 1 10.1197 -6.3015 2.2237 47 1 11.5991 -8.5643 4.1779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278838029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = -33.371057 kcal Electronic energy + Delta-G solvation = -27088.736398 eV Core-core repulsion = 23205.820928 eV Total energy + Delta-G solvation = -3882.915471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47832 -39.64432 -37.50221 -36.72530 -35.38719 -34.00492 -31.76093 -31.18086 -29.71996 -28.43106 -27.54741 -27.06208 -25.66494 -24.35626 -22.99788 -21.44307 -21.06342 -20.80937 -19.01549 -18.63506 -17.16055 -16.95548 -16.60533 -16.29575 -15.69419 -15.39071 -15.30532 -15.09042 -14.67358 -14.44445 -14.27141 -13.99795 -13.78553 -13.51520 -13.28143 -13.09450 -12.97276 -12.81738 -12.63497 -12.46678 -12.30556 -12.12616 -11.73542 -11.59479 -11.58446 -11.35686 -11.18722 -10.93185 -10.81430 -10.71857 -10.30441 -10.15775 -9.85253 -9.78917 -9.70011 -9.59427 -9.18467 -8.87935 -8.58226 -6.90315 -5.72976 -3.02503 0.01418 0.92588 1.34686 2.24886 2.73148 3.03109 3.45285 3.49791 3.51829 3.72249 4.28457 4.35100 4.41955 4.51532 4.56541 4.68694 4.75221 4.90311 4.97469 5.03530 5.08245 5.10727 5.13445 5.20486 5.25274 5.35114 5.41864 5.46341 5.50693 5.56894 5.63799 5.67558 5.71861 5.81983 5.87988 5.95879 5.96868 6.20132 6.33907 6.54186 6.73085 7.06820 7.40928 7.70366 7.91702 8.00899 8.45106 9.56512 10.14412 10.50215 11.49390 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.001979 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.363289 B =14147.809619 C =14283.657730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.045 4.045 5 C 0.034 3.966 6 N -0.478 5.478 7 C 0.121 3.879 8 C -0.295 4.295 9 C 0.592 3.408 10 O -0.522 6.522 11 N -0.601 5.601 12 C 0.068 3.932 13 C 0.089 3.911 14 C 0.085 3.915 15 H 0.100 0.900 16 O -0.550 6.550 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 S 0.194 5.806 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.186 0.814 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.367 0.633 44 H 0.020 0.980 45 H 0.028 0.972 46 H 0.389 0.611 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.439 15.590 -12.401 31.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.085 4.085 5 C -0.240 4.240 6 N -0.192 5.192 7 C -0.037 4.037 8 C -0.419 4.419 9 C 0.379 3.621 10 O -0.399 6.399 11 N -0.333 5.333 12 C -0.077 4.077 13 C -0.034 4.034 14 C 0.025 3.975 15 H 0.118 0.882 16 O -0.354 6.354 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 S 0.453 5.547 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.203 0.797 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.213 0.787 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.223 0.777 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -24.472 15.544 -11.836 31.314 hybrid contribution 1.590 -0.154 0.109 1.601 sum -22.883 15.390 -11.727 29.966 Atomic orbital electron populations 1.21835 0.94221 1.02057 1.02310 1.21124 0.96126 0.97013 0.96733 1.21850 1.01801 0.95108 1.01704 1.20475 0.85026 1.02457 1.00578 1.27914 1.01721 0.95862 0.98500 1.66312 1.02023 1.30372 1.20493 1.22169 0.92399 0.94359 0.94760 1.25730 0.97499 1.03160 1.15477 1.16793 0.86511 0.80105 0.78685 1.90871 1.38579 1.59037 1.51430 1.47504 1.08450 1.27561 1.49769 1.22052 0.87436 0.98325 0.99915 1.22342 0.83334 0.98335 0.99409 1.22563 0.90026 0.85802 0.99105 0.88174 1.86619 1.61921 1.46233 1.40609 1.21206 0.92374 0.93254 0.93343 1.42229 1.14318 1.47080 1.33348 1.19220 0.90275 1.17156 1.10744 0.91249 1.24769 0.97975 1.00120 0.98107 1.69689 1.33037 1.36441 1.18619 0.86175 0.83816 0.78639 0.77445 1.21698 1.21758 1.20793 1.84365 0.95705 1.23303 1.51333 0.92298 0.92221 0.92386 0.90982 0.92320 0.92183 0.92832 0.89394 0.88612 0.79706 0.90678 0.91314 0.89139 0.88405 0.89725 0.78696 0.96232 0.95459 0.77663 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.19 37.16 0.34 -0.26 16 2 C -0.09 -0.49 2.91 -90.62 -0.26 -0.76 16 3 C -0.15 -0.98 8.99 37.16 0.33 -0.64 16 4 C -0.04 -0.28 5.27 -27.88 -0.15 -0.43 16 5 C 0.03 0.30 5.88 -13.29 -0.08 0.23 16 6 N -0.48 -5.34 9.74 -11.50 -0.11 -5.45 16 7 C 0.12 1.44 11.10 -18.85 -0.21 1.23 16 8 C -0.29 -3.55 6.23 -37.09 -0.23 -3.78 16 9 C 0.59 8.50 7.64 -12.85 -0.10 8.41 16 10 O -0.52 -9.29 16.44 5.20 0.09 -9.20 16 11 N -0.60 -7.31 2.84 -183.13 -0.52 -7.83 16 12 C 0.07 0.57 8.57 59.85 0.51 1.09 16 13 C 0.09 1.13 5.13 -4.04 -0.02 1.11 16 14 C 0.09 1.42 3.30 -26.73 -0.09 1.33 16 15 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 16 O -0.55 -8.91 12.64 -35.23 -0.45 -9.36 16 17 C 0.13 2.55 5.92 -4.04 -0.02 2.52 16 18 N -0.72 -18.99 5.49 -59.91 -0.33 -19.32 16 19 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 23 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 S 0.19 1.66 18.12 -107.50 -1.95 -0.29 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.51 6.80 -51.93 -0.35 0.16 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.07 0.67 7.78 -51.94 -0.40 0.27 16 39 H 0.07 0.51 4.69 -24.43 -0.11 0.39 16 40 H 0.09 0.56 7.84 -51.93 -0.41 0.16 16 41 H 0.10 1.35 7.38 -51.93 -0.38 0.97 16 42 H 0.08 0.83 7.86 -51.92 -0.41 0.42 16 43 H 0.37 4.60 9.05 45.56 0.41 5.02 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.39 11.02 7.54 -40.82 -0.31 10.71 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -35.75 397.53 -8.38 -44.13 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.59 Total: 9.37 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.22 Total: 2.43 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.24 Total: -60.88 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.36 Total: -18.56 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.95 Total: -0.29 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.75 -8.38 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278838029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.756 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds