Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47347 * 2 1 4 4 N 1.29020 * 124.91858 * 89.99902 * 3 2 1 5 5 C 1.31775 * 117.13073 * 180.02562 * 4 3 2 6 6 C 1.50702 * 122.75650 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46790 * 305.02889 * 6 5 4 8 8 O 1.21275 * 120.00506 * 359.97438 * 7 6 5 9 9 N 1.34787 * 119.99608 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99903 * 359.97438 * 9 7 6 11 11 C 1.46503 * 119.99782 * 179.97438 * 9 7 6 12 12 C 1.52999 * 109.46848 * 269.99651 * 11 9 7 13 13 H 1.08998 * 109.47286 * 60.00247 * 12 11 9 14 14 O 1.42897 * 109.47286 * 299.99825 * 12 11 9 15 15 C 1.53002 * 109.46691 * 180.02562 * 12 11 9 16 16 N 1.46499 * 109.46968 * 185.00218 * 15 12 11 17 17 C 1.46501 * 119.99709 * 270.00017 * 16 15 12 18 18 C 1.36934 * 120.00454 * 89.99703 * 16 15 12 19 19 H 1.08004 * 119.99917 * 342.03174 * 18 16 15 20 20 C 1.38811 * 120.00342 * 161.74548 * 18 16 15 21 21 N 1.31621 * 119.99876 * 346.03717 * 20 18 16 22 22 Si 1.86799 * 120.00096 * 166.03022 * 20 18 16 23 23 H 1.48506 * 109.46744 * 90.00539 * 22 20 18 24 24 H 1.48499 * 109.47480 * 210.00306 * 22 20 18 25 25 H 1.48498 * 109.47191 * 330.00817 * 22 20 18 26 26 C 1.33643 * 114.49899 * 0.23325 * 5 4 3 27 27 S 1.70973 * 124.91524 * 270.00193 * 3 2 1 28 28 H 1.08996 * 109.47388 * 300.00010 * 1 2 3 29 29 H 1.09002 * 109.47169 * 60.00097 * 1 2 3 30 30 H 1.09003 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47049 * 240.00163 * 2 1 3 32 32 H 1.09002 * 109.47169 * 119.99903 * 2 1 3 33 33 H 1.09005 * 109.47120 * 185.02526 * 6 5 4 34 34 H 1.08997 * 109.46620 * 65.02367 * 6 5 4 35 35 H 1.09002 * 109.47260 * 269.99767 * 10 9 7 36 36 H 1.08999 * 109.47631 * 30.00138 * 10 9 7 37 37 H 1.08999 * 109.47093 * 150.00030 * 10 9 7 38 38 H 1.08998 * 109.46975 * 149.99707 * 11 9 7 39 39 H 1.09000 * 109.47196 * 30.00069 * 11 9 7 40 40 H 0.96698 * 114.00413 * 300.00682 * 14 12 11 41 41 H 1.09002 * 109.46962 * 65.00150 * 15 12 11 42 42 H 1.09003 * 109.46872 * 304.99980 * 15 12 11 43 43 H 1.09006 * 109.47075 * 264.92772 * 17 16 15 44 44 H 1.08998 * 109.47722 * 24.92881 * 17 16 15 45 45 H 1.09004 * 109.46892 * 144.93217 * 17 16 15 46 46 H 0.97003 * 119.99674 * 179.97438 * 21 20 18 47 47 H 1.07994 * 126.04246 * 179.76827 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0579 5 6 2.7133 3.3482 0.8794 6 6 3.0393 4.2720 2.0245 7 6 1.8444 4.3829 2.9361 8 8 0.8281 3.7724 2.6808 9 7 1.9052 5.1607 4.0352 10 6 3.1331 5.8977 4.3439 11 6 0.7434 5.2690 4.9211 12 6 -0.1417 6.4294 4.4618 13 1 -0.4787 6.2474 3.4413 14 8 0.6065 7.6459 4.5066 15 6 -1.3547 6.5428 5.3874 16 7 -2.2619 7.5747 4.8790 17 6 -2.1075 8.9649 5.3145 18 6 -3.2542 7.2398 3.9969 19 1 -3.2022 6.3076 3.4539 20 6 -4.3301 8.0956 3.8047 21 7 -4.5465 9.0808 4.6503 22 14 -5.4708 7.8492 2.3461 23 1 -6.5809 6.9422 2.7336 24 1 -6.0268 9.1603 1.9254 25 1 -4.7115 7.2491 1.2198 26 6 2.8363 3.7123 -0.4006 27 16 2.3585 2.3434 -1.4020 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2921 5.2582 1.6352 34 1 3.8864 3.8735 2.5828 35 1 3.7801 5.2807 4.9675 36 1 3.6507 6.1459 3.4173 37 1 2.8821 6.8148 4.8767 38 1 1.0804 5.4509 5.9416 39 1 0.1727 4.3410 4.8870 40 1 0.9387 7.8713 5.3863 41 1 -1.0227 6.8127 6.3899 42 1 -1.8757 5.5861 5.4224 43 1 -2.7764 9.1595 6.1530 44 1 -1.0767 9.1362 5.6247 45 1 -2.3546 9.6335 4.4899 46 1 -5.2981 9.6791 4.5158 47 1 3.1714 4.6746 -0.7581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278883220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = -13.590555 kcal Electronic energy + Delta-G solvation = -27869.911295 eV Core-core repulsion = 23987.853571 eV Total energy + Delta-G solvation = -3882.057724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46805 -39.31243 -37.35799 -35.24057 -34.49096 -34.44720 -31.68884 -31.21099 -29.76234 -28.23033 -26.82667 -25.81202 -25.60848 -24.99674 -22.47661 -21.72970 -20.54601 -19.91150 -19.31411 -17.71485 -17.10564 -16.68906 -16.21107 -15.82508 -15.60036 -15.17087 -14.91372 -14.69420 -14.55977 -14.36668 -14.05726 -13.64327 -13.42568 -13.15581 -13.13097 -12.90774 -12.77572 -12.55382 -12.32677 -12.20885 -11.83227 -11.82309 -11.56847 -11.35679 -11.30601 -11.05460 -10.81682 -10.67076 -10.47248 -10.27371 -10.02278 -9.82880 -9.76082 -9.69485 -9.59728 -9.45174 -8.83495 -8.54798 -8.28683 -6.66117 -5.63883 -3.05512 0.59339 1.24287 1.59501 2.61019 2.80717 3.16953 3.44386 3.50232 3.54763 3.84914 4.51944 4.57071 4.66524 4.83486 4.88567 4.91319 5.01593 5.03351 5.12778 5.18958 5.19643 5.35203 5.37672 5.41664 5.51940 5.53136 5.60301 5.66728 5.76501 5.88796 5.95217 5.99415 6.01604 6.08656 6.08855 6.57208 6.66839 6.83815 6.90556 7.45880 7.55298 7.70005 7.79112 7.91416 8.19611 8.34488 8.46341 9.32748 9.96309 10.42710 11.40922 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010630 B = 0.002988 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.385473 B = 9368.954030 C =11003.685695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C 0.056 3.944 4 N -0.445 5.445 5 C 0.090 3.910 6 C -0.064 4.064 7 C 0.515 3.485 8 O -0.517 6.517 9 N -0.610 5.610 10 C 0.082 3.918 11 C 0.086 3.914 12 C 0.070 3.930 13 H 0.098 0.902 14 O -0.550 6.550 15 C 0.127 3.873 16 N -0.595 5.595 17 C 0.172 3.828 18 C -0.250 4.250 19 H 0.068 0.932 20 C -0.001 4.001 21 N -0.911 5.911 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C -0.257 4.257 27 S 0.106 5.894 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.356 0.644 41 H 0.038 0.962 42 H 0.054 0.946 43 H 0.022 0.978 44 H -0.001 1.001 45 H 0.044 0.956 46 H 0.251 0.749 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.422 -13.381 -6.206 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C -0.223 4.223 4 N -0.158 5.158 5 C -0.042 4.042 6 C -0.107 4.107 7 C 0.302 3.698 8 O -0.391 6.391 9 N -0.344 5.344 10 C -0.061 4.061 11 C -0.038 4.038 12 C 0.007 3.993 13 H 0.116 0.884 14 O -0.353 6.353 15 C -0.002 4.002 16 N -0.317 5.317 17 C 0.027 3.973 18 C -0.380 4.380 19 H 0.086 0.914 20 C -0.198 4.198 21 N -0.557 5.557 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.396 4.396 27 S 0.361 5.639 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.201 0.799 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.018 0.982 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 20.428 -13.991 -7.560 25.888 hybrid contribution -0.301 0.738 0.503 0.943 sum 20.127 -13.253 -7.056 25.111 Atomic orbital electron populations 1.21777 0.93255 1.02436 1.03242 1.20207 0.96990 0.87461 1.03903 1.27059 1.02981 1.01728 0.90566 1.65963 1.12973 1.05640 1.31221 1.19570 1.00282 0.91340 0.93054 1.20259 0.98162 0.98811 0.93450 1.20219 0.89264 0.79057 0.81306 1.90753 1.32060 1.44477 1.71848 1.47707 1.14595 1.46717 1.25354 1.21785 0.86106 0.96736 1.01514 1.22289 0.87433 1.01530 0.92510 1.23307 0.91014 0.81857 1.03085 0.88439 1.86647 1.73045 1.42201 1.33440 1.21280 0.91060 0.94015 0.93838 1.43770 1.32959 1.02954 1.52001 1.20748 0.93150 0.84580 0.98820 1.19227 0.98493 1.05133 1.15148 0.91422 1.24888 0.97342 0.98893 0.98726 1.70114 1.30323 1.19786 1.35448 0.86281 0.80757 0.76907 0.82808 1.21481 1.21590 1.20624 1.26744 1.12842 1.04347 0.95702 1.83853 1.60961 1.05787 1.13281 0.91402 0.92423 0.91484 0.89884 0.88874 0.87354 0.87487 0.93133 0.91423 0.90385 0.90776 0.89272 0.79897 0.94327 0.92731 0.95962 0.98235 0.93740 0.93909 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.04 -0.40 6.52 -27.89 -0.18 -0.58 16 3 C 0.06 0.67 6.64 -13.46 -0.09 0.58 16 4 N -0.44 -6.42 9.68 -8.06 -0.08 -6.50 16 5 C 0.09 1.18 5.64 -84.23 -0.47 0.70 16 6 C -0.06 -0.71 4.75 -29.04 -0.14 -0.85 16 7 C 0.52 7.79 7.64 -10.98 -0.08 7.70 16 8 O -0.52 -10.23 15.02 5.56 0.08 -10.15 16 9 N -0.61 -7.99 2.80 -181.57 -0.51 -8.50 16 10 C 0.08 0.72 9.98 59.84 0.60 1.31 16 11 C 0.09 1.24 5.10 -4.04 -0.02 1.21 16 12 C 0.07 1.28 3.48 -26.73 -0.09 1.18 16 13 H 0.10 2.22 8.14 -51.93 -0.42 1.79 16 14 O -0.55 -9.42 10.98 -35.23 -0.39 -9.80 16 15 C 0.13 2.62 5.30 -4.04 -0.02 2.60 16 16 N -0.60 -15.55 2.89 -181.11 -0.52 -16.07 16 17 C 0.17 4.40 8.74 59.85 0.52 4.92 16 18 C -0.25 -7.28 9.70 -15.06 -0.15 -7.43 16 19 H 0.07 1.96 7.87 -52.48 -0.41 1.55 16 20 C 0.00 -0.03 5.10 -17.43 -0.09 -0.12 16 21 N -0.91 -27.59 10.49 55.49 0.58 -27.01 16 22 Si 0.90 23.08 29.58 -169.99 -5.03 18.05 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 26 C -0.26 -2.85 11.07 29.12 0.32 -2.53 16 27 S 0.11 1.08 23.18 -107.50 -2.49 -1.41 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 0.93 7.29 -51.93 -0.38 0.55 16 34 H 0.11 0.93 8.11 -51.93 -0.42 0.51 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.49 6.44 -51.93 -0.33 0.15 16 37 H 0.08 0.66 6.88 -51.93 -0.36 0.30 16 38 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 39 H 0.09 1.44 7.42 -51.93 -0.39 1.05 16 40 H 0.36 4.66 8.79 45.56 0.40 5.06 16 41 H 0.04 0.70 8.07 -51.93 -0.42 0.29 16 42 H 0.05 1.15 8.04 -51.93 -0.42 0.73 16 43 H 0.02 0.61 7.47 -51.93 -0.39 0.22 16 44 H 0.00 -0.02 7.22 -51.93 -0.37 -0.39 16 45 H 0.04 1.25 7.03 -51.93 -0.37 0.89 16 46 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -37.46 397.53 -8.68 -46.14 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.79 Total: 1.59 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 0.47 Total: 7.66 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.53 Total: -58.07 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.30 Total: -19.95 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.05 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.49 Total: -1.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.46 -8.68 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278883220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.545 kcal (2) G-P(sol) polarization free energy of solvation -37.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds