Wall clock time and date at job start Sat Apr 11 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46987 * 2 1 4 4 N 1.29035 * 124.91585 * 90.00502 * 3 2 1 5 5 C 1.31780 * 117.12780 * 180.02562 * 4 3 2 6 6 C 1.50698 * 122.75152 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47014 * 305.02460 * 6 5 4 8 8 O 1.21278 * 120.00018 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99699 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00140 * 0.02562 * 9 7 6 11 11 C 1.46497 * 119.99651 * 179.97438 * 9 7 6 12 12 C 1.53002 * 109.47403 * 270.00164 * 11 9 7 13 13 H 1.09001 * 109.47254 * 305.00338 * 12 11 9 14 14 O 1.42904 * 109.46812 * 65.00339 * 12 11 9 15 15 C 1.53000 * 109.47394 * 185.00181 * 12 11 9 16 16 N 1.46492 * 109.47108 * 180.02562 * 15 12 11 17 17 C 1.46500 * 120.00210 * 90.00308 * 16 15 12 18 18 C 1.36945 * 119.99943 * 269.99571 * 16 15 12 19 19 H 1.07996 * 119.99615 * 23.19524 * 18 16 15 20 20 C 1.38810 * 120.00080 * 203.19096 * 18 16 15 21 21 N 1.31622 * 120.00098 * 13.70939 * 20 18 16 22 22 Si 1.86801 * 119.99774 * 193.71349 * 20 18 16 23 23 H 1.48497 * 109.47375 * 89.99926 * 22 20 18 24 24 H 1.48499 * 109.46906 * 209.99984 * 22 20 18 25 25 H 1.48496 * 109.47355 * 329.99889 * 22 20 18 26 26 C 1.33639 * 114.49628 * 0.22952 * 5 4 3 27 27 S 1.70976 * 124.92102 * 270.00037 * 3 2 1 28 28 H 1.08996 * 109.46823 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46708 * 299.99656 * 1 2 3 30 30 H 1.09003 * 109.46996 * 59.99787 * 1 2 3 31 31 H 1.09000 * 109.46986 * 240.00794 * 2 1 3 32 32 H 1.08998 * 109.47415 * 120.00022 * 2 1 3 33 33 H 1.08999 * 109.46944 * 185.02553 * 6 5 4 34 34 H 1.08999 * 109.47146 * 65.02439 * 6 5 4 35 35 H 1.08999 * 109.46703 * 269.99634 * 10 9 7 36 36 H 1.09002 * 109.47035 * 29.99029 * 10 9 7 37 37 H 1.08993 * 109.47145 * 150.00026 * 10 9 7 38 38 H 1.08997 * 109.47172 * 150.00419 * 11 9 7 39 39 H 1.08999 * 109.47308 * 30.00586 * 11 9 7 40 40 H 0.96701 * 114.00241 * 59.99982 * 14 12 11 41 41 H 1.09001 * 109.47048 * 300.00283 * 15 12 11 42 42 H 1.08997 * 109.47056 * 59.99965 * 15 12 11 43 43 H 1.09003 * 109.47320 * 95.15739 * 17 16 15 44 44 H 1.09001 * 109.46937 * 215.15811 * 17 16 15 45 45 H 1.09003 * 109.46950 * 335.15247 * 17 16 15 46 46 H 0.97000 * 119.99802 * 180.02562 * 21 20 18 47 47 H 1.08007 * 126.03494 * 179.77131 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1171 1.0581 5 6 2.7133 3.3483 0.8795 6 6 3.0393 4.2719 2.0247 7 6 1.8444 4.3828 2.9364 8 8 0.8284 3.7716 2.6815 9 7 1.9053 5.1605 4.0355 10 6 3.1328 5.8984 4.3437 11 6 0.7436 5.2687 4.9214 12 6 -0.1418 6.4290 4.4622 13 1 0.4525 7.3414 4.4113 14 8 -0.6777 6.1368 3.1701 15 6 -1.2874 6.6215 5.4579 16 7 -2.1354 7.7320 5.0178 17 6 -3.2741 7.4778 4.1319 18 6 -1.8636 9.0079 5.4347 19 1 -0.8662 9.2703 5.7549 20 6 -2.8702 9.9637 5.4455 21 7 -4.1279 9.5965 5.3197 22 14 -2.4397 11.7712 5.6384 23 1 -2.2228 12.3741 4.2989 24 1 -3.5536 12.4748 6.3236 25 1 -1.2006 11.9014 6.4464 26 6 2.8362 3.7123 -0.4005 27 16 2.3586 2.3436 -1.4019 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.2920 5.2582 1.6354 34 1 3.8865 3.8736 2.5830 35 1 3.7805 5.2818 4.9669 36 1 3.6497 6.1469 3.4168 37 1 2.8814 6.8152 4.8768 38 1 1.0805 5.4507 5.9419 39 1 0.1729 4.3406 4.8873 40 1 -1.2188 5.3359 3.1407 41 1 -1.8816 5.7091 5.5088 42 1 -0.8787 6.8443 6.4434 43 1 -4.1803 7.3672 4.7276 44 1 -3.3922 8.3141 3.4429 45 1 -3.0972 6.5631 3.5662 46 1 -4.8312 10.2645 5.3269 47 1 3.1713 4.6749 -0.7579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278883221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:30 Heat of formation + Delta-G solvation = -15.529280 kcal Electronic energy + Delta-G solvation = -27888.648835 eV Core-core repulsion = 24006.507041 eV Total energy + Delta-G solvation = -3882.141793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.45871 -39.29231 -37.16548 -35.23333 -34.51943 -34.40621 -31.61596 -31.19974 -29.70353 -28.20925 -26.94650 -25.79959 -25.61328 -24.99573 -22.46161 -21.67973 -20.50433 -19.92122 -19.29753 -17.70863 -17.06032 -16.80559 -16.15968 -15.75533 -15.56227 -15.13944 -14.78919 -14.73204 -14.57484 -14.35760 -13.97563 -13.63348 -13.40473 -13.18741 -13.13657 -13.00971 -12.80114 -12.54713 -12.27116 -12.18936 -11.86958 -11.77983 -11.60588 -11.34460 -11.33616 -11.06176 -10.84058 -10.63468 -10.43424 -10.27816 -9.98153 -9.83951 -9.73871 -9.67057 -9.54975 -9.45487 -8.84461 -8.56313 -8.28593 -6.61110 -5.65307 -3.12238 0.58176 1.22796 1.58173 2.60580 2.86046 3.17951 3.40897 3.46605 3.47944 3.83420 4.51474 4.53492 4.65506 4.82058 4.87434 4.98299 5.01177 5.07413 5.09950 5.18834 5.20791 5.33393 5.36945 5.49156 5.52650 5.55270 5.56972 5.62719 5.73282 5.81101 5.92545 5.95015 6.05119 6.07715 6.13088 6.59438 6.67596 6.79780 6.94841 7.48991 7.51671 7.68618 7.79816 7.86957 8.37451 8.42148 8.47582 9.30017 9.93981 10.43885 11.38374 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.002421 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.810050 B =11563.866463 C =12002.836642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C 0.055 3.945 4 N -0.444 5.444 5 C 0.092 3.908 6 C -0.065 4.065 7 C 0.523 3.477 8 O -0.515 6.515 9 N -0.613 5.613 10 C 0.077 3.923 11 C 0.084 3.916 12 C 0.071 3.929 13 H 0.090 0.910 14 O -0.545 6.545 15 C 0.126 3.874 16 N -0.592 5.592 17 C 0.169 3.831 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.906 5.906 22 Si 0.904 3.096 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C -0.257 4.257 27 S 0.105 5.895 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.364 0.636 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.026 0.974 44 H 0.036 0.964 45 H 0.001 0.999 46 H 0.252 0.748 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.046 -17.533 -10.087 27.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C -0.224 4.224 4 N -0.157 5.157 5 C -0.041 4.041 6 C -0.108 4.108 7 C 0.310 3.690 8 O -0.389 6.389 9 N -0.347 5.347 10 C -0.066 4.066 11 C -0.039 4.039 12 C 0.008 3.992 13 H 0.108 0.892 14 O -0.349 6.349 15 C -0.004 4.004 16 N -0.314 5.314 17 C 0.025 3.975 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.551 5.551 22 Si 0.734 3.266 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.396 4.396 27 S 0.360 5.640 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.211 0.789 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.020 0.980 46 H 0.062 0.938 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 17.491 -17.633 -10.947 27.142 hybrid contribution 0.227 1.473 1.014 1.802 sum 17.718 -16.160 -9.933 25.956 Atomic orbital electron populations 1.21771 0.93291 1.02396 1.03171 1.20203 0.96968 0.87504 1.03897 1.27051 1.03076 1.01703 0.90582 1.65973 1.12959 1.05627 1.31181 1.19557 1.00180 0.91286 0.93039 1.20263 0.98268 0.98745 0.93508 1.20054 0.89058 0.78888 0.81025 1.90684 1.31999 1.44501 1.71725 1.47722 1.14407 1.47085 1.25531 1.21795 0.86440 0.96867 1.01528 1.22342 0.87496 1.01127 0.92945 1.23186 0.94836 0.95556 0.85660 0.89228 1.86559 1.70266 1.48106 1.29997 1.21302 0.92022 0.91737 0.95292 1.43690 1.31156 1.02683 1.53861 1.20728 0.89274 0.95639 0.91884 1.19139 0.93767 0.86111 1.39275 0.91754 1.25007 0.95036 0.98535 1.01153 1.70085 0.98272 1.32030 1.54715 0.86267 0.77221 0.85460 0.77643 1.21571 1.21792 1.20571 1.26738 1.12820 1.04298 0.95704 1.83852 1.61040 1.05814 1.13295 0.91524 0.91436 0.92442 0.89907 0.88899 0.87479 0.87635 0.92758 0.91318 0.90680 0.90174 0.89996 0.78930 0.94355 0.92891 0.95588 0.94480 0.97998 0.93830 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.90 37.16 0.37 -0.89 16 2 C -0.04 -0.37 6.52 -27.88 -0.18 -0.56 16 3 C 0.06 0.62 6.64 -13.45 -0.09 0.53 16 4 N -0.44 -6.12 9.68 -8.06 -0.08 -6.20 16 5 C 0.09 1.15 5.64 -84.23 -0.47 0.68 16 6 C -0.07 -0.71 4.75 -29.03 -0.14 -0.84 16 7 C 0.52 7.58 7.27 -10.98 -0.08 7.50 16 8 O -0.51 -9.39 14.01 -2.09 -0.03 -9.42 16 9 N -0.61 -7.97 2.86 -181.57 -0.52 -8.49 16 10 C 0.08 0.69 10.24 59.85 0.61 1.30 16 11 C 0.08 1.21 5.11 -4.04 -0.02 1.19 16 12 C 0.07 1.28 3.48 -26.73 -0.09 1.19 16 13 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 14 O -0.55 -11.02 11.01 -42.88 -0.47 -11.49 16 15 C 0.13 2.58 5.34 -4.05 -0.02 2.56 16 16 N -0.59 -15.38 2.84 -181.12 -0.51 -15.89 16 17 C 0.17 4.43 8.66 59.85 0.52 4.95 16 18 C -0.25 -7.12 9.65 -15.06 -0.15 -7.27 16 19 H 0.06 1.75 7.87 -52.49 -0.41 1.34 16 20 C 0.00 0.03 5.09 -17.43 -0.09 -0.06 16 21 N -0.91 -27.30 10.76 55.49 0.60 -26.70 16 22 Si 0.90 22.34 29.58 -169.99 -5.03 17.31 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C -0.26 -2.73 11.07 29.12 0.32 -2.41 16 27 S 0.10 1.01 23.18 -107.50 -2.49 -1.48 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.11 0.91 7.29 -51.93 -0.38 0.53 16 34 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 37 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 38 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 39 H 0.08 1.25 7.42 -51.93 -0.39 0.87 16 40 H 0.36 6.95 8.50 45.56 0.39 7.33 16 41 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 42 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 43 H 0.03 0.73 7.33 -51.93 -0.38 0.35 16 44 H 0.04 1.05 7.37 -51.93 -0.38 0.67 16 45 H 0.00 0.03 7.00 -51.93 -0.36 -0.33 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.18 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -36.19 397.52 -8.92 -45.11 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.86 Total: 3.38 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 0.49 Total: 7.87 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.51 Total: -57.28 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.50 Total: -20.91 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.48 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.19 -8.92 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278883221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.583 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds