Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 C 1.50705 * 109.46974 * 119.99519 * 2 1 3 5 5 N 1.29434 * 124.80354 * 300.02509 * 4 2 1 6 6 C 1.30935 * 117.36219 * 179.97438 * 5 4 2 7 7 C 1.35660 * 114.19290 * 0.02562 * 6 5 4 8 8 C 1.46688 * 126.13053 * 180.02562 * 7 6 5 9 9 O 1.21683 * 120.00145 * 352.52802 * 8 7 6 10 10 N 1.34776 * 120.00042 * 172.52665 * 8 7 6 11 11 C 1.46506 * 119.99944 * 3.03996 * 10 8 7 12 12 C 1.46497 * 120.00007 * 183.03310 * 10 8 7 13 13 C 1.53001 * 109.46875 * 90.00369 * 12 10 8 14 14 H 1.09008 * 109.47244 * 60.00225 * 13 12 10 15 15 O 1.42894 * 109.47255 * 299.99927 * 13 12 10 16 16 C 1.52997 * 109.47168 * 179.97438 * 13 12 10 17 17 N 1.46499 * 109.47298 * 185.00135 * 16 13 12 18 18 C 1.46499 * 120.00201 * 90.00075 * 17 16 13 19 19 C 1.36946 * 119.99720 * 270.00225 * 17 16 13 20 20 H 1.07999 * 120.00359 * 13.99002 * 19 17 16 21 21 C 1.38816 * 119.99723 * 193.98988 * 19 17 16 22 22 N 1.31622 * 120.00186 * 15.07282 * 21 19 17 23 23 Si 1.86794 * 119.99786 * 195.07275 * 21 19 17 24 24 H 1.48502 * 109.47547 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47391 * 120.00093 * 23 21 19 26 26 H 1.48506 * 109.47340 * 240.00039 * 23 21 19 27 27 S 1.70945 * 124.80298 * 119.72385 * 4 2 1 28 28 H 1.08992 * 109.47634 * 300.00388 * 1 2 3 29 29 H 1.09002 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46963 * 60.00691 * 1 2 3 31 31 H 1.08992 * 109.47634 * 239.99612 * 2 1 3 32 32 H 1.08996 * 109.47740 * 60.00032 * 3 2 1 33 33 H 1.09001 * 109.46919 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47163 * 299.99059 * 3 2 1 35 35 H 1.08002 * 122.90424 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47060 * 53.88042 * 11 10 8 37 37 H 1.08997 * 109.47214 * 173.87957 * 11 10 8 38 38 H 1.09002 * 109.46867 * 293.87652 * 11 10 8 39 39 H 1.09004 * 109.47508 * 209.99950 * 12 10 8 40 40 H 1.08996 * 109.47252 * 330.00159 * 12 10 8 41 41 H 0.96698 * 114.00493 * 300.00392 * 15 13 12 42 42 H 1.08996 * 109.47630 * 305.00071 * 16 13 12 43 43 H 1.09005 * 109.47267 * 64.99860 * 16 13 12 44 44 H 1.08998 * 109.46694 * 86.54637 * 18 17 16 45 45 H 1.09000 * 109.47223 * 206.54261 * 18 17 16 46 46 H 1.08995 * 109.47021 * 326.54038 * 18 17 16 47 47 H 0.96993 * 119.99834 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7772 -0.3502 2.4473 6 6 2.2895 -1.0755 3.4096 7 6 3.0327 -2.1255 2.9789 8 6 3.7227 -3.1027 3.8279 9 8 3.7709 -2.9358 5.0322 10 7 4.3034 -4.1855 3.2739 11 6 4.3033 -4.3527 1.8184 12 6 4.9347 -5.1952 4.1272 13 6 3.9032 -6.2597 4.5062 14 1 3.5222 -6.7348 3.6021 15 8 2.8234 -5.6464 5.2132 16 6 4.5626 -7.3146 5.3968 17 7 3.6094 -8.3951 5.6618 18 6 3.5427 -9.5499 4.7629 19 6 2.7807 -8.3255 6.7499 20 1 2.6633 -7.3922 7.2805 21 6 2.0915 -9.4546 7.1707 22 7 2.4449 -10.6436 6.7303 23 14 0.6627 -9.2867 8.3621 24 1 0.4687 -7.8546 8.7038 25 1 -0.5726 -9.8173 7.7317 26 1 0.9564 -10.0546 9.5988 27 16 3.0137 -2.1100 1.2170 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 2.1345 -0.8562 4.4557 36 1 4.7221 -3.4618 1.3504 37 1 4.9067 -5.2206 1.5524 38 1 3.2812 -4.5001 1.4697 39 1 5.7583 -5.6632 3.5879 40 1 5.3157 -4.7202 5.0312 41 1 3.0896 -5.2032 6.0304 42 1 5.4396 -7.7196 4.8921 43 1 4.8646 -6.8573 6.3391 44 1 4.2760 -10.2944 5.0729 45 1 2.5440 -9.9848 4.8035 46 1 3.7584 -9.2298 3.7436 47 1 1.9636 -11.4325 7.0247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278889306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = -35.922128 kcal Electronic energy + Delta-G solvation = -27822.327846 eV Core-core repulsion = 23939.301753 eV Total energy + Delta-G solvation = -3883.026093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36683 -40.53161 -38.74052 -36.87562 -36.34000 -36.14033 -33.33365 -31.86197 -30.50193 -28.31842 -28.04958 -27.96447 -27.53330 -26.26650 -24.18963 -23.01725 -22.16916 -21.69952 -19.60618 -19.28083 -18.80481 -17.77953 -17.70125 -17.18978 -16.84250 -16.67095 -16.20540 -15.90549 -15.64543 -15.35372 -15.22567 -15.02596 -14.95827 -14.66233 -14.46775 -14.19753 -13.80790 -13.73225 -13.59653 -13.11212 -12.99078 -12.84889 -12.69041 -12.65330 -12.54284 -12.49042 -12.20709 -12.13551 -12.05667 -11.94173 -11.90076 -11.82606 -11.27226 -11.12588 -10.55859 -10.49227 -10.46648 -10.05399 -9.57707 -8.75506 -7.80769 -5.17963 -0.77968 0.16942 0.57159 1.39586 1.42931 1.45466 1.55745 1.82837 2.16137 2.52200 3.02573 3.31359 3.45778 3.59132 3.77744 3.80844 4.04132 4.04871 4.10381 4.13927 4.19054 4.24832 4.38993 4.48755 4.50558 4.55507 4.69115 4.73821 4.81277 4.84866 4.86140 4.94313 4.94434 5.00089 5.11085 5.25438 5.33880 5.36103 5.40566 5.45909 5.62528 5.78445 6.17666 6.35361 6.63111 6.92011 6.99433 7.18999 7.91640 8.29398 9.23442 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.002505 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.701994 B =11173.756226 C =11707.819059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.022 4.022 3 C -0.137 4.137 4 C 0.031 3.969 5 N -0.501 5.501 6 C 0.110 3.890 7 C -0.321 4.321 8 C 0.592 3.408 9 O -0.564 6.564 10 N -0.601 5.601 11 C 0.055 3.945 12 C 0.093 3.907 13 C 0.081 3.919 14 H 0.082 0.918 15 O -0.565 6.565 16 C 0.121 3.879 17 N -0.615 5.615 18 C 0.169 3.831 19 C -0.227 4.227 20 H 0.068 0.932 21 C -0.068 4.068 22 N -0.944 5.944 23 Si 0.962 3.038 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.292 1.292 27 S 0.255 5.745 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.175 0.825 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.369 0.631 42 H 0.072 0.928 43 H 0.047 0.953 44 H -0.007 1.007 45 H 0.043 0.957 46 H 0.025 0.975 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 21.698 -21.681 31.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 C -0.196 4.196 4 C -0.243 4.243 5 N -0.215 5.215 6 C -0.048 4.048 7 C -0.445 4.445 8 C 0.380 3.620 9 O -0.444 6.444 10 N -0.332 5.332 11 C -0.089 4.089 12 C -0.030 4.030 13 C 0.018 3.982 14 H 0.099 0.901 15 O -0.370 6.370 16 C -0.006 4.006 17 N -0.337 5.337 18 C 0.024 3.976 19 C -0.358 4.358 20 H 0.086 0.914 21 C -0.261 4.261 22 N -0.594 5.594 23 Si 0.792 3.208 24 H -0.199 1.199 25 H -0.222 1.222 26 H -0.220 1.220 27 S 0.515 5.485 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.135 0.865 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.192 0.808 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.087 0.913 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.215 0.785 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.011 0.989 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.635 21.216 -22.291 31.121 hybrid contribution -0.807 0.004 2.645 2.766 sum 3.828 21.220 -19.646 29.170 Atomic orbital electron populations 1.21811 0.92560 1.02312 1.03171 1.20137 0.97187 0.96636 0.90389 1.21795 1.01188 0.93491 1.03149 1.28581 0.99029 0.99310 0.97335 1.66216 1.24541 1.31484 0.99266 1.22131 0.92620 0.89609 1.00465 1.25711 1.13983 1.06003 0.98849 1.16981 0.77828 0.80690 0.86474 1.90771 1.61069 1.77101 1.15491 1.47584 1.56150 1.21003 1.08432 1.22238 1.04001 1.04702 0.77939 1.22332 0.95697 0.88667 0.96344 1.23025 0.87992 0.92049 0.95145 0.90054 1.86532 1.36115 1.74090 1.40247 1.21539 0.91762 0.89311 0.97962 1.44096 1.41818 1.20302 1.27524 1.20723 1.00101 0.87796 0.88948 1.19515 1.17325 0.94157 1.04789 0.91395 1.25511 1.03226 0.95141 1.02201 1.70266 1.42350 0.97211 1.49576 0.85259 0.79931 0.77294 0.78356 1.19915 1.22162 1.21977 1.83821 1.44098 1.22257 0.98283 0.93264 0.92863 0.89225 0.86487 0.93242 0.92387 0.89326 0.80831 0.89857 0.85704 0.91298 0.85705 0.90286 0.78458 0.90937 0.93499 0.98905 0.93877 0.95670 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.17 71.98 0.66 -0.94 16 2 C -0.02 -0.24 3.35 -11.54 -0.04 -0.28 16 3 C -0.14 -1.39 9.17 71.98 0.66 -0.73 16 4 C 0.03 0.54 5.90 88.46 0.52 1.07 16 5 N -0.50 -11.94 10.49 -190.30 -2.00 -13.94 16 6 C 0.11 2.91 11.10 84.23 0.93 3.85 16 7 C -0.32 -8.06 6.33 23.88 0.15 -7.90 16 8 C 0.59 17.43 7.10 86.45 0.61 18.04 16 9 O -0.56 -20.63 15.43 0.04 0.00 -20.63 16 10 N -0.60 -14.17 2.83 -851.49 -2.41 -16.58 16 11 C 0.05 0.79 8.79 127.77 1.12 1.91 16 12 C 0.09 2.24 5.15 86.38 0.44 2.69 16 13 C 0.08 2.66 3.48 30.59 0.11 2.77 16 14 H 0.08 2.78 8.14 -2.38 -0.02 2.77 16 15 O -0.56 -23.07 11.65 -144.65 -1.69 -24.75 16 16 C 0.12 4.59 5.37 86.38 0.46 5.05 16 17 N -0.61 -30.84 2.91 -726.94 -2.12 -32.96 16 18 C 0.17 8.41 9.07 127.77 1.16 9.57 16 19 C -0.23 -12.84 9.24 84.03 0.78 -12.06 16 20 H 0.07 3.82 7.84 -2.91 -0.02 3.79 16 21 C -0.07 -3.97 5.08 84.86 0.43 -3.54 16 22 N -0.94 -57.29 10.35 21.65 0.22 -57.07 16 23 Si 0.96 47.94 29.58 68.60 2.03 49.96 16 24 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 26 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 27 S 0.25 3.95 17.82 -56.49 -1.01 2.94 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.12 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.17 4.72 8.06 -2.91 -0.02 4.69 16 36 H 0.08 0.91 5.90 -13.10 -0.08 0.83 16 37 H 0.12 1.14 7.76 -2.39 -0.02 1.12 16 38 H 0.07 1.04 7.00 -2.39 -0.02 1.02 16 39 H 0.13 2.04 7.88 -2.39 -0.02 2.02 16 40 H 0.08 2.12 7.38 -2.39 -0.02 2.10 16 41 H 0.37 14.66 8.54 -74.06 -0.63 14.03 16 42 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 43 H 0.05 1.81 8.04 -2.38 -0.02 1.79 16 44 H -0.01 -0.39 8.00 -2.39 -0.02 -0.41 16 45 H 0.04 2.42 6.12 -2.39 -0.01 2.40 16 46 H 0.02 1.04 8.10 -2.39 -0.02 1.02 16 47 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -77.65 392.78 1.32 -76.33 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.28 Total: 17.19 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 8.01 Total: 19.50 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -6.30 Total: -120.54 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -1.68 Total: -45.38 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.96 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.01 Total: 2.94 kcal Total: -77.65 1.32 -76.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278889306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.410 kcal (2) G-P(sol) polarization free energy of solvation -77.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds