Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47301 * 2 1 4 4 C 1.50699 * 109.47096 * 120.00540 * 2 1 3 5 5 N 1.29428 * 124.80288 * 299.96680 * 4 2 1 6 6 C 1.30946 * 117.36055 * 180.02562 * 5 4 2 7 7 C 1.35664 * 114.19260 * 0.02562 * 6 5 4 8 8 C 1.46686 * 126.12554 * 179.97438 * 7 6 5 9 9 O 1.21683 * 120.00113 * 8.00460 * 8 7 6 10 10 N 1.34780 * 119.99258 * 188.00763 * 8 7 6 11 11 C 1.46497 * 120.00317 * 0.24782 * 10 8 7 12 12 C 1.46507 * 119.99366 * 180.25225 * 10 8 7 13 13 C 1.52996 * 109.46857 * 89.99849 * 12 10 8 14 14 H 1.09001 * 109.47585 * 304.99699 * 13 12 10 15 15 O 1.42900 * 109.47547 * 65.00189 * 13 12 10 16 16 C 1.53000 * 109.46829 * 184.99526 * 13 12 10 17 17 N 1.46508 * 109.47103 * 179.97438 * 16 13 12 18 18 C 1.46494 * 120.00284 * 270.00068 * 17 16 13 19 19 C 1.36940 * 119.99498 * 90.00332 * 17 16 13 20 20 H 1.07998 * 120.00222 * 341.42069 * 19 17 16 21 21 C 1.38809 * 119.99828 * 161.14153 * 19 17 16 22 22 N 1.31622 * 119.99897 * 343.47290 * 21 19 17 23 23 Si 1.86798 * 120.00091 * 163.46843 * 21 19 17 24 24 H 1.48502 * 109.47237 * 60.00415 * 23 21 19 25 25 H 1.48501 * 109.47223 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47276 * 300.00625 * 23 21 19 27 27 S 1.70957 * 124.80431 * 120.33105 * 4 2 1 28 28 H 1.09011 * 109.47052 * 299.99747 * 1 2 3 29 29 H 1.08995 * 109.47414 * 59.99411 * 1 2 3 30 30 H 1.09004 * 109.47391 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46735 * 240.00392 * 2 1 3 32 32 H 1.09001 * 109.47531 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47163 * 300.00246 * 3 2 1 34 34 H 1.08998 * 109.46906 * 60.00496 * 3 2 1 35 35 H 1.08000 * 122.90155 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.47511 * 276.07139 * 11 10 8 37 37 H 1.09002 * 109.46898 * 36.07714 * 11 10 8 38 38 H 1.09010 * 109.46909 * 156.07079 * 11 10 8 39 39 H 1.08994 * 109.47210 * 329.99331 * 12 10 8 40 40 H 1.09001 * 109.46535 * 209.99857 * 12 10 8 41 41 H 0.96704 * 114.00276 * 59.99328 * 15 13 12 42 42 H 1.09003 * 109.47134 * 60.00303 * 16 13 12 43 43 H 1.08998 * 109.47446 * 299.99973 * 16 13 12 44 44 H 1.08997 * 109.47120 * 264.51570 * 18 17 16 45 45 H 1.09000 * 109.46949 * 24.51961 * 18 17 16 46 46 H 1.08997 * 109.46821 * 144.51643 * 18 17 16 47 47 H 0.97001 * 119.99967 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7780 -0.3500 2.4472 6 6 2.2911 -1.0750 3.4093 7 6 3.0341 -2.1252 2.9785 8 6 3.7256 -3.1014 3.8273 9 8 3.5442 -3.0980 5.0305 10 7 4.5619 -4.0022 3.2743 11 6 4.7845 -4.0027 1.8263 12 6 5.2483 -4.9808 4.1214 13 6 4.3872 -6.2391 4.2474 14 1 3.3970 -5.9667 4.6128 15 8 4.2674 -6.8645 2.9682 16 6 5.0441 -7.2103 5.2303 17 7 4.2193 -8.4150 5.3515 18 6 3.1667 -8.4829 6.3681 19 6 4.4323 -9.4776 4.5144 20 1 4.9772 -9.3381 3.5925 21 6 3.9528 -10.7353 4.8537 22 7 3.5897 -10.9889 6.0931 23 14 3.8229 -12.0679 3.5511 24 1 5.1682 -12.3381 2.9833 25 1 3.2857 -13.3091 4.1646 26 1 2.9109 -11.6160 2.4697 27 16 3.0259 -2.1016 1.2165 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 2.1363 -0.8559 4.4555 36 1 3.9921 -4.5691 1.3371 37 1 4.7789 -2.9770 1.4575 38 1 5.7483 -4.4624 1.6071 39 1 5.4135 -4.5530 5.1102 40 1 6.2073 -5.2401 3.6729 41 1 5.1118 -7.1342 2.5815 42 1 5.1355 -6.7333 6.2062 43 1 6.0343 -7.4827 4.8649 44 1 3.5520 -8.9816 7.2573 45 1 2.8465 -7.4737 6.6275 46 1 2.3184 -9.0437 5.9758 47 1 3.2543 -11.8677 6.3301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278889307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = -11.928748 kcal Electronic energy + Delta-G solvation = -27697.270324 eV Core-core repulsion = 23815.284661 eV Total energy + Delta-G solvation = -3881.985662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.43612 -39.59259 -37.40585 -35.73463 -35.47136 -34.51545 -31.51762 -30.72081 -29.34118 -27.57210 -27.22141 -26.55898 -25.81362 -25.16164 -22.92203 -22.03296 -20.81680 -20.47357 -18.72500 -18.45307 -16.98448 -16.80983 -16.42502 -16.15939 -15.65360 -15.06302 -14.96780 -14.77443 -14.60896 -14.56762 -14.27279 -13.69958 -13.66806 -13.35953 -13.22540 -13.13124 -12.94786 -12.64415 -12.51501 -12.10208 -11.88595 -11.74348 -11.64862 -11.62015 -11.41644 -11.04971 -10.80757 -10.68378 -10.57468 -10.31827 -10.21993 -9.95074 -9.92028 -9.74098 -9.70848 -9.56870 -9.18139 -8.62329 -8.36841 -6.69338 -5.64660 -3.05641 0.04857 0.95188 1.36859 2.28736 2.80877 3.07722 3.42640 3.49263 3.51144 3.72566 4.33217 4.40542 4.55400 4.62133 4.64299 4.74123 4.93158 5.03778 5.07313 5.11207 5.18311 5.24841 5.31456 5.37387 5.43554 5.47395 5.51068 5.52806 5.74629 5.77398 5.82258 5.84821 5.93428 5.98149 6.03354 6.36762 6.53308 6.73416 6.83779 7.14159 7.43543 7.45525 7.76360 7.87723 7.97756 8.25162 8.45011 9.29575 9.93782 10.41528 11.40959 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.002401 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.581446 B =11660.750162 C =12135.934691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.019 4.019 3 C -0.140 4.140 4 C 0.032 3.968 5 N -0.478 5.478 6 C 0.120 3.880 7 C -0.294 4.294 8 C 0.591 3.409 9 O -0.524 6.524 10 N -0.599 5.599 11 C 0.070 3.930 12 C 0.085 3.915 13 C 0.070 3.930 14 H 0.091 0.909 15 O -0.542 6.542 16 C 0.126 3.874 17 N -0.593 5.593 18 C 0.162 3.838 19 C -0.237 4.237 20 H 0.068 0.932 21 C -0.006 4.006 22 N -0.911 5.911 23 Si 0.904 3.096 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.286 1.286 27 S 0.193 5.807 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.186 0.814 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.360 0.640 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.030 0.970 45 H -0.003 1.003 46 H 0.042 0.958 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 23.843 -14.391 27.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 C -0.199 4.199 4 C -0.241 4.241 5 N -0.192 5.192 6 C -0.038 4.038 7 C -0.418 4.418 8 C 0.378 3.622 9 O -0.402 6.402 10 N -0.331 5.331 11 C -0.075 4.075 12 C -0.038 4.038 13 C 0.007 3.993 14 H 0.109 0.891 15 O -0.346 6.346 16 C -0.003 4.003 17 N -0.315 5.315 18 C 0.018 3.982 19 C -0.367 4.367 20 H 0.086 0.914 21 C -0.203 4.203 22 N -0.557 5.557 23 Si 0.734 3.266 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.212 1.212 27 S 0.453 5.547 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.203 0.797 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.205 0.795 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.015 0.985 46 H 0.061 0.939 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.348 23.605 -14.289 27.595 hybrid contribution 0.284 -0.743 0.139 0.807 sum 0.632 22.862 -14.150 26.894 Atomic orbital electron populations 1.21809 0.92647 1.02566 1.02942 1.19882 0.97144 0.96167 0.90927 1.21806 1.01104 0.94011 1.02957 1.28011 0.99191 0.99874 0.97069 1.66195 1.23453 1.30969 0.98540 1.22149 0.92169 0.89099 1.00341 1.25754 1.13431 1.06257 0.96329 1.16777 0.78870 0.79801 0.86744 1.90855 1.63410 1.72240 1.13727 1.47568 1.45000 1.32534 1.07971 1.22035 1.03842 1.01186 0.80484 1.22489 0.95480 0.89764 0.96032 1.23245 1.00377 0.89872 0.85818 0.89145 1.86638 1.34181 1.80376 1.33364 1.21289 0.93933 0.88690 0.96408 1.43761 1.36166 1.12285 1.39241 1.20805 0.91209 0.94050 0.92165 1.19078 1.32727 0.86306 0.98594 0.91387 1.24914 1.02433 0.97094 0.95906 1.70103 1.48614 1.21385 1.15582 0.86343 0.77799 0.81177 0.81252 1.21166 1.21865 1.21240 1.84410 1.42835 1.25439 1.02005 0.91351 0.91547 0.92384 0.89253 0.92549 0.91572 0.91361 0.79734 0.90737 0.91559 0.89097 0.88910 0.90076 0.79453 0.93604 0.93184 0.95145 0.98455 0.93880 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.17 37.16 0.34 -0.59 16 2 C -0.02 -0.13 3.35 -91.78 -0.31 -0.44 16 3 C -0.14 -0.84 9.17 37.15 0.34 -0.50 16 4 C 0.03 0.31 5.90 -13.29 -0.08 0.23 16 5 N -0.48 -5.54 10.49 -11.50 -0.12 -5.66 16 6 C 0.12 1.48 11.10 -18.85 -0.21 1.27 16 7 C -0.29 -3.68 6.25 -37.09 -0.23 -3.91 16 8 C 0.59 8.79 7.64 -12.85 -0.10 8.69 16 9 O -0.52 -9.52 16.45 5.20 0.09 -9.43 16 10 N -0.60 -7.71 2.84 -183.12 -0.52 -8.23 16 11 C 0.07 0.65 8.59 59.85 0.51 1.16 16 12 C 0.09 1.14 5.11 -4.04 -0.02 1.12 16 13 C 0.07 1.22 3.48 -26.73 -0.09 1.13 16 14 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 15 O -0.54 -9.61 12.00 -35.23 -0.42 -10.04 16 16 C 0.13 2.50 5.36 -4.04 -0.02 2.47 16 17 N -0.59 -15.07 2.88 -181.12 -0.52 -15.59 16 18 C 0.16 4.21 8.98 59.84 0.54 4.74 16 19 C -0.24 -6.50 9.07 -15.06 -0.14 -6.64 16 20 H 0.07 1.77 7.68 -52.49 -0.40 1.37 16 21 C -0.01 -0.18 5.04 -17.43 -0.09 -0.27 16 22 N -0.91 -27.22 10.67 55.49 0.59 -26.63 16 23 Si 0.90 22.29 29.59 -169.99 -5.03 17.26 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 S 0.19 1.76 18.09 -107.50 -1.94 -0.19 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.45 8.12 -51.93 -0.42 0.02 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.19 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 37 H 0.07 0.53 4.59 -23.55 -0.11 0.43 16 38 H 0.09 0.65 7.83 -51.92 -0.41 0.24 16 39 H 0.09 1.31 7.42 -51.93 -0.39 0.93 16 40 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 41 H 0.36 5.16 9.05 45.56 0.41 5.57 16 42 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 43 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 44 H 0.03 0.84 7.41 -51.93 -0.38 0.45 16 45 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 46 H 0.04 1.20 7.18 -51.93 -0.37 0.83 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -34.83 394.98 -8.13 -42.97 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.65 Total: 1.10 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 0.45 Total: 8.48 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.57 Total: -56.10 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.34 Total: -19.47 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.94 Total: -0.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.83 -8.13 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278889307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.039 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds