Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00348 * 2 1 4 4 C 1.50700 * 109.47484 * 179.97438 * 3 2 1 5 5 N 1.30940 * 122.90389 * 90.02229 * 4 3 2 6 6 C 1.29422 * 117.36257 * 179.97438 * 5 4 3 7 7 S 1.70950 * 110.39288 * 0.02562 * 6 5 4 8 8 C 1.35664 * 122.90220 * 269.98900 * 4 3 2 9 9 C 1.46685 * 126.13108 * 0.03035 * 8 4 3 10 10 O 1.21678 * 119.99954 * 352.02044 * 9 8 4 11 11 N 1.34774 * 119.99546 * 172.02113 * 9 8 4 12 12 C 1.46497 * 120.00301 * 3.25015 * 11 9 8 13 13 C 1.53006 * 109.47044 * 82.79485 * 12 11 9 14 14 N 1.46497 * 109.47044 * 180.02562 * 13 12 11 15 15 C 1.46501 * 120.00034 * 270.00175 * 14 13 12 16 16 C 1.36935 * 120.00010 * 89.99934 * 14 13 12 17 17 H 1.08001 * 119.99942 * 34.05115 * 16 14 13 18 18 C 1.38813 * 120.00094 * 214.04659 * 16 14 13 19 19 N 1.31624 * 120.00012 * 5.42744 * 18 16 14 20 20 Si 1.86798 * 120.00133 * 185.43055 * 18 16 14 21 21 H 1.48506 * 109.47038 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47142 * 119.99679 * 20 18 16 23 23 H 1.48494 * 109.47315 * 240.00029 * 20 18 16 24 24 C 1.46508 * 119.99775 * 183.25053 * 11 9 8 25 25 C 1.52992 * 109.46907 * 124.71467 * 24 11 9 26 26 C 1.53003 * 109.47101 * 244.71364 * 24 11 9 27 27 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46967 * 300.00418 * 1 2 3 29 29 H 1.09005 * 109.46924 * 59.99937 * 1 2 3 30 30 H 1.09002 * 109.46866 * 59.99667 * 3 2 1 31 31 H 1.09003 * 109.46691 * 300.00272 * 3 2 1 32 32 H 1.08002 * 124.80765 * 179.73764 * 6 5 4 33 33 H 1.09007 * 109.47215 * 202.79169 * 12 11 9 34 34 H 1.08995 * 109.47142 * 322.79676 * 12 11 9 35 35 H 1.08994 * 109.47220 * 299.99911 * 13 12 11 36 36 H 1.09004 * 109.46789 * 60.00260 * 13 12 11 37 37 H 1.08995 * 109.47739 * 94.87277 * 15 14 13 38 38 H 1.09003 * 109.47060 * 214.87810 * 15 14 13 39 39 H 1.09003 * 109.47288 * 334.87350 * 15 14 13 40 40 H 0.97001 * 119.99892 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46897 * 4.70878 * 24 11 9 42 42 H 1.09000 * 109.47823 * 59.99978 * 25 24 11 43 43 H 1.09008 * 109.46821 * 180.02562 * 25 24 11 44 44 H 1.09000 * 109.47267 * 299.99731 * 25 24 11 45 45 H 1.09005 * 109.47042 * 60.00023 * 26 24 11 46 46 H 1.08996 * 109.47032 * 180.02562 * 26 24 11 47 47 H 1.09001 * 109.46968 * 300.00320 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2222 1.1305 -1.0984 6 6 5.5063 1.0293 -0.9729 7 16 5.9424 0.9942 0.6797 8 6 4.2468 1.1287 1.1400 9 6 3.7230 1.1701 2.5095 10 8 2.5459 1.4095 2.7037 11 7 4.5455 0.9428 3.5526 12 6 5.9760 0.7251 3.3237 13 6 6.6822 2.0756 3.1881 14 7 8.1126 1.8579 2.9585 15 6 9.0316 1.7681 4.0958 16 6 8.5905 1.7383 1.6809 17 1 8.1370 2.3029 0.8796 18 6 9.6579 0.8915 1.4156 19 7 10.1417 0.1237 2.3690 20 14 10.4079 0.8415 -0.2945 21 1 9.6876 1.7925 -1.1789 22 1 11.8408 1.2242 -0.2180 23 1 10.2912 -0.5322 -0.8463 24 6 4.0090 0.9135 4.9157 25 6 4.3813 -0.4125 5.5818 26 6 4.5997 2.0724 5.7212 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 6.2034 0.9703 -1.7957 33 1 6.3994 0.1766 4.1652 34 1 6.1140 0.1495 2.4084 35 1 6.2589 2.6241 2.3467 36 1 6.5442 2.6512 4.1035 37 1 9.1787 0.7215 4.3625 38 1 9.9896 2.2120 3.8248 39 1 8.6106 2.3040 4.9465 40 1 10.8878 -0.4678 2.1837 41 1 2.9240 1.0109 4.8812 42 1 5.4664 -0.5099 5.6163 43 1 3.9818 -0.4345 6.5957 44 1 3.9605 -1.2382 5.0079 45 1 4.3345 3.0172 5.2466 46 1 4.2010 2.0504 6.7354 47 1 5.6848 1.9751 5.7556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278922243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = 2.240719 kcal Electronic energy + Delta-G solvation = -29621.044686 eV Core-core repulsion = 25739.673458 eV Total energy + Delta-G solvation = -3881.371228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16110 -39.11335 -37.24859 -36.63266 -35.44587 -32.83474 -31.40662 -30.67022 -28.33989 -27.70748 -27.16770 -26.10413 -25.90634 -24.10391 -23.79055 -22.39147 -20.83668 -19.66696 -18.45631 -18.09658 -17.14310 -16.39529 -16.33921 -16.01152 -15.34967 -15.26288 -14.90778 -14.72542 -14.38083 -14.04055 -13.93935 -13.73623 -13.50187 -13.25697 -12.83824 -12.79658 -12.62536 -12.29238 -12.18068 -12.15546 -11.81567 -11.70469 -11.31696 -11.27050 -11.09208 -11.04477 -10.81216 -10.68220 -10.67160 -10.50752 -10.20246 -10.06256 -9.82608 -9.27192 -9.01366 -8.84458 -8.76691 -8.52673 -8.13485 -6.85725 -6.02759 -3.58612 0.71862 1.89441 2.25376 2.79485 3.15674 3.21239 3.26715 3.28737 3.41589 4.21180 4.23187 4.66296 4.80321 5.10077 5.15051 5.19919 5.27639 5.33013 5.35621 5.38896 5.46661 5.51751 5.57510 5.66305 5.70522 5.71979 5.76270 5.83302 5.87512 5.97320 6.03455 6.07799 6.21112 6.30125 6.36242 6.46626 6.57707 6.64103 6.86171 7.12248 7.31565 7.52337 7.54327 7.59470 8.11632 8.17821 8.40123 8.94639 9.54433 10.11297 10.97319 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010761 B = 0.005375 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.456186 B = 5208.320825 C = 7314.297307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.382 6.382 3 C 0.131 3.869 4 C 0.125 3.875 5 N -0.480 5.480 6 C -0.053 4.053 7 S 0.342 5.658 8 C -0.328 4.328 9 C 0.600 3.400 10 O -0.543 6.543 11 N -0.599 5.599 12 C 0.071 3.929 13 C 0.129 3.871 14 N -0.594 5.594 15 C 0.155 3.845 16 C -0.256 4.256 17 H 0.070 0.930 18 C 0.023 3.977 19 N -0.883 5.883 20 Si 0.886 3.114 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.136 3.864 25 C -0.163 4.163 26 C -0.162 4.162 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.189 0.811 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.002 0.998 40 H 0.258 0.742 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 1.041 2.901 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.300 6.300 3 C 0.052 3.948 4 C -0.017 4.017 5 N -0.195 5.195 6 C -0.345 4.345 7 S 0.607 5.393 8 C -0.453 4.453 9 C 0.389 3.611 10 O -0.423 6.423 11 N -0.331 5.331 12 C -0.056 4.056 13 C 0.000 4.000 14 N -0.317 5.317 15 C 0.010 3.990 16 C -0.390 4.390 17 H 0.087 0.913 18 C -0.180 4.180 19 N -0.524 5.524 20 Si 0.714 3.286 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C 0.033 3.967 25 C -0.220 4.220 26 C -0.220 4.220 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.206 0.794 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.965 0.801 2.923 10.416 hybrid contribution -0.236 -0.032 -1.179 1.203 sum -10.201 0.768 1.744 10.378 Atomic orbital electron populations 1.22671 0.81238 1.02320 0.99828 1.87900 1.19337 1.27359 1.95450 1.21020 0.86370 0.85439 1.01947 1.19959 0.96235 0.99482 0.86053 1.66122 1.05464 1.16329 1.31617 1.29319 0.95514 1.02568 1.07062 1.87405 0.98052 1.58394 0.95483 1.26294 1.01529 1.19144 0.98350 1.16813 0.85188 0.76208 0.82913 1.90668 1.16061 1.50496 1.85075 1.48031 1.08887 1.70297 1.05928 1.23030 0.78144 1.02256 1.02183 1.21574 0.85889 0.93252 0.99318 1.43776 0.99545 1.84776 1.03574 1.20896 0.92455 0.99058 0.86543 1.19104 1.14342 1.20095 0.85416 0.91257 1.25343 0.99790 0.95611 0.97225 1.69978 1.25942 1.24929 1.31540 0.86465 0.79793 0.78067 0.84255 1.19584 1.20922 1.20907 1.21012 0.99948 0.95201 0.80548 1.22163 1.02547 0.96884 1.00452 1.22220 1.01980 0.98258 0.99516 0.89986 0.93894 0.94402 0.89142 0.92595 0.79421 0.89018 0.90242 0.93251 0.93029 0.94518 0.94331 0.97989 0.93121 0.88380 0.91733 0.91515 0.92342 0.92287 0.91793 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.61 10.69 -35.23 -0.38 -6.98 16 3 C 0.13 2.23 5.85 36.01 0.21 2.44 16 4 C 0.12 2.35 6.42 -83.89 -0.54 1.81 16 5 N -0.48 -9.03 10.50 -11.53 -0.12 -9.15 16 6 C -0.05 -0.93 12.22 51.75 0.63 -0.29 16 7 S 0.34 6.21 12.57 -107.50 -1.35 4.86 16 8 C -0.33 -6.13 6.13 -37.09 -0.23 -6.36 16 9 C 0.60 11.02 7.56 -12.85 -0.10 10.92 16 10 O -0.54 -10.55 13.61 5.21 0.07 -10.48 16 11 N -0.60 -9.73 2.39 -167.64 -0.40 -10.13 16 12 C 0.07 1.22 4.60 -4.04 -0.02 1.20 16 13 C 0.13 2.35 5.05 -4.04 -0.02 2.33 16 14 N -0.59 -12.69 2.89 -181.12 -0.52 -13.22 16 15 C 0.16 3.27 9.08 59.85 0.54 3.81 16 16 C -0.26 -5.88 7.44 -15.06 -0.11 -5.99 16 17 H 0.07 1.57 6.76 -52.49 -0.35 1.22 16 18 C 0.02 0.56 5.26 -17.43 -0.09 0.47 16 19 N -0.88 -22.30 11.03 55.49 0.61 -21.69 16 20 Si 0.89 19.02 29.56 -169.99 -5.02 13.99 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.14 1.85 3.24 -67.93 -0.22 1.63 16 25 C -0.16 -1.94 9.10 37.15 0.34 -1.60 16 26 C -0.16 -1.94 8.53 37.16 0.32 -1.62 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 1.56 5.86 -51.93 -0.30 1.25 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.19 2.75 8.06 -52.49 -0.42 2.32 16 33 H 0.09 1.56 6.20 -51.93 -0.32 1.24 16 34 H 0.08 1.52 4.35 -21.98 -0.10 1.42 16 35 H 0.05 0.94 6.10 -50.20 -0.31 0.63 16 36 H 0.05 0.88 5.91 -51.93 -0.31 0.57 16 37 H 0.04 0.84 7.17 -51.93 -0.37 0.46 16 38 H 0.04 0.87 7.84 -51.93 -0.41 0.47 16 39 H 0.00 0.03 7.84 -51.93 -0.41 -0.38 16 40 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 41 H 0.10 1.41 6.93 -51.93 -0.36 1.05 16 42 H 0.06 0.80 6.50 -51.93 -0.34 0.46 16 43 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.82 6.59 -51.93 -0.34 0.48 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -27.85 375.57 -6.48 -34.33 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.85 Total: 2.50 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 1.83 Total: 10.31 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.43 Total: -54.19 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.31 Total: -17.46 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Atomic # 16 Polarization: 6.21 SS G_CDS: -1.35 Total: 4.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.85 -6.48 -34.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278922243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.575 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds