Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99652 * 2 1 4 4 C 1.50708 * 109.46609 * 179.97438 * 3 2 1 5 5 N 1.30939 * 122.90097 * 89.97321 * 4 3 2 6 6 C 1.29434 * 117.36344 * 180.02562 * 5 4 3 7 7 S 1.70953 * 110.38925 * 0.02562 * 6 5 4 8 8 C 1.35655 * 122.90382 * 270.01121 * 4 3 2 9 9 C 1.46683 * 126.13357 * 359.97438 * 8 4 3 10 10 O 1.21694 * 119.99477 * 359.97438 * 9 8 4 11 11 N 1.34771 * 120.00470 * 179.97438 * 9 8 4 12 12 C 1.46499 * 120.00205 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47314 * 325.00453 * 12 11 9 14 14 C 1.53003 * 109.47274 * 205.00074 * 12 11 9 15 15 N 1.46508 * 109.46853 * 55.00454 * 14 12 11 16 16 C 1.36934 * 119.99673 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00613 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99676 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99978 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46787 * 90.00112 * 20 18 16 22 22 H 1.48496 * 109.47157 * 209.99838 * 20 18 16 23 23 H 1.48498 * 109.47365 * 330.00301 * 20 18 16 24 24 C 1.53005 * 109.46961 * 85.00699 * 12 11 9 25 25 C 1.52995 * 109.47258 * 59.99738 * 24 12 11 26 26 C 1.52999 * 109.46929 * 179.97438 * 24 12 11 27 27 C 1.53003 * 109.46616 * 299.99778 * 24 12 11 28 28 H 1.09000 * 109.47499 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47411 * 300.00330 * 1 2 3 30 30 H 1.09007 * 109.47076 * 60.00558 * 1 2 3 31 31 H 1.09000 * 109.47666 * 60.00114 * 3 2 1 32 32 H 1.08997 * 109.46857 * 299.99258 * 3 2 1 33 33 H 1.07994 * 124.80729 * 179.73712 * 6 5 4 34 34 H 0.97004 * 119.99750 * 0.02562 * 11 9 8 35 35 H 1.08993 * 109.47101 * 175.00026 * 14 12 11 36 36 H 1.08992 * 109.47425 * 295.00565 * 14 12 11 37 37 H 0.96999 * 119.99644 * 359.97438 * 15 14 12 38 38 H 0.96998 * 119.99664 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47164 * 60.00363 * 25 24 12 40 40 H 1.08997 * 109.47251 * 180.02562 * 25 24 12 41 41 H 1.08998 * 109.47200 * 300.00391 * 25 24 12 42 42 H 1.09004 * 109.47197 * 60.00143 * 26 24 12 43 43 H 1.08999 * 109.46753 * 179.97438 * 26 24 12 44 44 H 1.08989 * 109.47239 * 299.99865 * 26 24 12 45 45 H 1.08998 * 109.47049 * 60.00094 * 27 24 12 46 46 H 1.09000 * 109.46554 * 180.02562 * 27 24 12 47 47 H 1.08995 * 109.47259 * 300.00001 * 27 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2220 1.1295 -1.0984 6 6 5.5061 1.0273 -0.9730 7 16 5.9422 0.9925 0.6796 8 6 4.2467 1.1282 1.1399 9 6 3.7230 1.1702 2.5094 10 8 2.5249 1.2661 2.7000 11 7 4.5686 1.1025 3.5567 12 6 4.0456 1.1450 4.9244 13 1 3.1796 1.8059 4.9620 14 6 5.1290 1.6698 5.8687 15 7 5.6102 2.9670 5.3868 16 6 6.5885 3.6332 6.0756 17 1 7.0050 3.2027 6.9742 18 6 7.0448 4.8620 5.6187 19 7 6.5375 5.3865 4.5232 20 14 8.3787 5.7712 6.5585 21 1 9.7113 5.3647 6.0442 22 1 8.2031 7.2344 6.3762 23 1 8.2825 5.4372 8.0023 24 6 3.6315 -0.2633 5.3561 25 6 4.8470 -1.1909 5.3034 26 6 3.0859 -0.2190 6.7848 27 6 2.5481 -0.7881 4.4118 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 6.2031 0.9675 -1.7958 34 1 5.5236 1.0265 3.4047 35 1 4.7136 1.7855 6.8697 36 1 5.9582 0.9631 5.8989 37 1 5.2364 3.3535 4.5795 38 1 6.8561 6.2454 4.2042 39 1 5.6189 -0.8170 5.9761 40 1 4.5519 -2.1943 5.6104 41 1 5.2362 -1.2225 4.2857 42 1 2.2199 0.4419 6.8227 43 1 2.7905 -1.2222 7.0920 44 1 3.8579 0.1547 7.4571 45 1 2.9372 -0.8197 3.3941 46 1 2.2528 -1.7912 4.7195 47 1 1.6821 -0.1273 4.4493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279009511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = -23.684190 kcal Electronic energy + Delta-G solvation = -29005.301734 eV Core-core repulsion = 25122.806317 eV Total energy + Delta-G solvation = -3882.495417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53918 -39.56864 -37.50070 -37.26871 -34.46437 -33.31893 -31.44125 -31.02595 -28.50038 -27.58384 -27.13393 -26.65286 -26.00289 -24.55767 -23.84287 -22.01823 -21.24535 -19.48426 -18.65690 -18.49097 -17.26850 -16.57490 -16.48752 -16.05143 -15.54440 -15.47443 -15.13087 -14.87822 -14.53644 -14.34638 -13.92992 -13.77721 -13.61672 -13.35692 -13.16432 -12.93924 -12.71474 -12.37313 -12.16622 -11.94018 -11.80634 -11.54912 -11.37830 -11.27955 -11.23331 -11.12477 -10.84188 -10.76291 -10.52594 -10.25212 -10.06268 -9.96611 -9.79139 -9.77596 -9.54296 -9.39415 -9.04708 -8.93027 -8.64491 -6.98542 -5.81113 -3.10984 0.21011 1.14951 1.53013 2.35709 3.25002 3.33025 3.39930 3.45559 3.47166 3.84600 4.30890 4.53196 4.87028 4.91670 4.93044 5.01563 5.09388 5.19636 5.28779 5.39207 5.50482 5.51096 5.55700 5.64812 5.65991 5.70141 5.78130 5.89118 5.90690 5.97551 6.04829 6.07808 6.12369 6.17025 6.30762 6.42937 6.45577 6.48186 6.63606 6.71115 6.89431 7.13245 7.50442 7.65046 7.72361 8.35764 8.37256 9.48378 10.03906 10.39200 11.41066 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.004142 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.232201 B = 6758.058568 C = 8378.375196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.131 3.869 4 C 0.131 3.869 5 N -0.465 5.465 6 C 0.021 3.979 7 S 0.191 5.809 8 C -0.262 4.262 9 C 0.597 3.403 10 O -0.520 6.520 11 N -0.700 5.700 12 C 0.150 3.850 13 H 0.090 0.910 14 C 0.141 3.859 15 N -0.732 5.732 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.077 4.077 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.129 4.129 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.206 0.794 34 H 0.401 0.599 35 H 0.038 0.962 36 H 0.029 0.971 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.041 0.959 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 -13.651 -7.770 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.298 6.298 3 C 0.052 3.948 4 C -0.008 4.008 5 N -0.179 5.179 6 C -0.274 4.274 7 S 0.447 5.553 8 C -0.387 4.387 9 C 0.381 3.619 10 O -0.398 6.398 11 N -0.349 5.349 12 C 0.046 3.954 13 H 0.108 0.892 14 C 0.013 3.987 15 N -0.377 5.377 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.078 4.078 25 C -0.199 4.199 26 C -0.198 4.198 27 C -0.186 4.186 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.222 0.778 34 H 0.236 0.764 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.902 -13.754 -7.516 16.748 hybrid contribution 0.263 1.049 -0.085 1.085 sum -5.639 -12.705 -7.601 15.843 Atomic orbital electron populations 1.22693 0.80738 1.02507 1.00086 1.87873 1.19737 1.26715 1.95513 1.21013 0.85242 0.85943 1.02598 1.20150 0.97038 0.98270 0.85316 1.66009 1.05007 1.15632 1.31229 1.28647 0.95195 1.02780 1.00780 1.84208 1.05169 1.63228 1.02685 1.25739 0.96677 1.16754 0.99518 1.16529 0.86281 0.76803 0.82243 1.90767 1.14337 1.50012 1.84686 1.45834 1.10007 1.73279 1.05818 1.21354 0.98373 0.95651 0.80055 0.89194 1.21113 0.93579 0.88882 0.95107 1.42364 1.45739 1.18354 1.31194 1.19197 1.12049 1.00233 1.05869 0.91143 1.24736 1.00244 0.97832 0.97859 1.69668 1.45389 1.19239 1.23543 0.86209 0.81714 0.79165 0.79188 1.21723 1.21799 1.20760 1.20913 0.95956 0.94961 0.96002 1.21918 0.97627 0.98595 1.01790 1.21878 1.01243 1.01433 0.95209 1.21881 0.98362 0.99608 0.98798 0.89828 0.93557 0.94317 0.88709 0.92086 0.77780 0.76404 0.94468 0.95316 0.78103 0.93492 0.91854 0.93074 0.93017 0.92533 0.92847 0.91886 0.92807 0.93968 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.64 10.69 -35.23 -0.38 -6.02 16 3 C 0.13 1.93 5.75 36.01 0.21 2.13 16 4 C 0.13 2.03 6.42 -83.89 -0.54 1.50 16 5 N -0.46 -6.69 10.50 -11.53 -0.12 -6.81 16 6 C 0.02 0.24 12.22 51.75 0.63 0.87 16 7 S 0.19 2.35 22.35 -107.50 -2.40 -0.05 16 8 C -0.26 -4.06 6.48 -37.10 -0.24 -4.30 16 9 C 0.60 10.02 6.13 -12.85 -0.08 9.94 16 10 O -0.52 -9.43 11.38 5.19 0.06 -9.37 16 11 N -0.70 -11.30 3.64 -55.11 -0.20 -11.50 16 12 C 0.15 2.46 1.69 -67.93 -0.11 2.34 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 14 C 0.14 2.64 5.10 -4.04 -0.02 2.62 16 15 N -0.73 -17.60 5.43 -59.91 -0.33 -17.93 16 16 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C -0.08 -1.04 0.62 -154.51 -0.10 -1.14 16 25 C -0.14 -1.77 7.97 37.16 0.30 -1.47 16 26 C -0.14 -1.73 8.12 37.16 0.30 -1.43 16 27 C -0.13 -1.82 7.00 37.16 0.26 -1.56 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.36 8.14 -51.92 -0.42 -0.07 16 31 H 0.10 1.48 6.00 -51.93 -0.31 1.17 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.40 6.35 7.79 -40.82 -0.32 6.03 16 35 H 0.04 0.71 6.71 -51.93 -0.35 0.36 16 36 H 0.03 0.53 6.17 -51.93 -0.32 0.21 16 37 H 0.38 9.97 7.33 -40.82 -0.30 9.67 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.65 7.60 -51.93 -0.39 0.25 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.79 6.54 -51.94 -0.34 0.45 16 45 H 0.05 0.83 5.77 -51.93 -0.30 0.53 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -31.97 386.60 -7.46 -39.43 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -7.10 Total: 12.31 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 1.47 Total: 3.98 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.08 Total: -62.94 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.32 Total: -15.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.40 Total: -0.05 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.97 -7.46 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279009511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.747 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds