Wall clock time and date at job start Sat Apr 11 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00272 * 2 1 4 4 C 1.50705 * 109.47166 * 179.97438 * 3 2 1 5 5 N 1.30933 * 122.90356 * 269.96492 * 4 3 2 6 6 C 1.29433 * 117.36030 * 180.02562 * 5 4 3 7 7 S 1.70949 * 110.39139 * 359.71712 * 6 5 4 8 8 C 1.35655 * 122.89882 * 90.00348 * 4 3 2 9 9 C 1.46690 * 126.13539 * 359.96285 * 8 4 3 10 10 O 1.21687 * 119.99669 * 359.97438 * 9 8 4 11 11 N 1.34769 * 119.99850 * 180.02562 * 9 8 4 12 12 C 1.46505 * 119.99798 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47068 * 34.99973 * 12 11 9 14 14 C 1.53002 * 109.47411 * 155.00053 * 12 11 9 15 15 N 1.46503 * 109.46849 * 304.99988 * 14 12 11 16 16 C 1.36938 * 119.99947 * 180.02562 * 15 14 12 17 17 H 1.07994 * 119.99894 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99592 * 180.02562 * 16 15 14 19 19 N 1.31610 * 120.00359 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99253 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47075 * 90.00177 * 20 18 16 22 22 H 1.48506 * 109.46804 * 209.99817 * 20 18 16 23 23 H 1.48489 * 109.47390 * 329.99727 * 20 18 16 24 24 C 1.52997 * 109.47212 * 274.99913 * 12 11 9 25 25 C 1.53006 * 109.47127 * 300.00138 * 24 12 11 26 26 C 1.52999 * 109.47317 * 59.99649 * 24 12 11 27 27 C 1.52992 * 109.47482 * 179.97438 * 24 12 11 28 28 H 1.09001 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47271 * 299.99941 * 1 2 3 30 30 H 1.09001 * 109.47205 * 59.99785 * 1 2 3 31 31 H 1.09001 * 109.46901 * 59.99869 * 3 2 1 32 32 H 1.08993 * 109.47308 * 300.00113 * 3 2 1 33 33 H 1.07996 * 124.80222 * 180.02562 * 6 5 4 34 34 H 0.97005 * 120.00963 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47047 * 64.99775 * 14 12 11 36 36 H 1.08997 * 109.47298 * 185.00434 * 14 12 11 37 37 H 0.97000 * 120.00112 * 0.02562 * 15 14 12 38 38 H 0.97008 * 119.99931 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.46955 * 60.00011 * 25 24 12 40 40 H 1.09000 * 109.47050 * 179.97438 * 25 24 12 41 41 H 1.09001 * 109.47002 * 299.99574 * 25 24 12 42 42 H 1.09002 * 109.46716 * 60.00091 * 26 24 12 43 43 H 1.09000 * 109.47486 * 180.02562 * 26 24 12 44 44 H 1.09001 * 109.47362 * 300.00732 * 26 24 12 45 45 H 1.09001 * 109.47066 * 60.00169 * 27 24 12 46 46 H 1.08996 * 109.47747 * 179.97438 * 27 24 12 47 47 H 1.09002 * 109.47103 * 300.00247 * 27 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2213 1.1310 1.1002 6 6 5.5056 1.0297 0.9757 7 16 5.9423 0.9864 -0.6765 8 6 4.2476 1.1280 -1.1381 9 6 3.7249 1.1685 -2.5081 10 8 2.5268 1.2623 -2.6996 11 7 4.5714 1.1009 -3.5545 12 6 4.0494 1.1420 -4.9228 13 1 3.1829 1.8021 -4.9614 14 6 5.1330 1.6671 -5.8666 15 7 5.6128 2.9649 -5.3853 16 6 6.5903 3.6320 -6.0743 17 1 7.0077 3.2012 -6.9723 18 6 7.0451 4.8615 -5.6178 19 7 6.5367 5.3863 -4.5232 20 14 8.3791 5.7712 -6.5575 21 1 7.7535 6.6583 -7.5708 22 1 9.1810 6.5884 -5.6118 23 1 9.2630 4.7901 -7.2365 24 6 3.6368 -0.2669 -5.3537 25 6 4.8531 -1.1936 -5.2995 26 6 2.5531 -0.7921 -4.4099 27 6 3.0910 -0.2240 -6.7824 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 6.2022 0.9747 1.7991 34 1 5.5264 1.0251 -3.4019 35 1 5.9629 0.9610 -5.8957 36 1 4.7183 1.7818 -6.8681 37 1 5.2381 3.3517 -4.5785 38 1 6.8549 6.2453 -4.2041 39 1 5.2414 -1.2241 -4.2815 40 1 4.5590 -2.1974 -5.6061 41 1 5.6251 -0.8195 -5.9719 42 1 1.6866 -0.1320 -4.4486 43 1 2.2595 -1.7960 -4.7167 44 1 2.9415 -0.8226 -3.3919 45 1 3.8628 0.1503 -7.4550 46 1 2.7975 -1.2277 -7.0896 47 1 2.2244 0.4361 -6.8206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279009512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:42 Heat of formation + Delta-G solvation = -23.670553 kcal Electronic energy + Delta-G solvation = -29005.154811 eV Core-core repulsion = 25122.659986 eV Total energy + Delta-G solvation = -3882.494825 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.53984 -39.56943 -37.50130 -37.26905 -34.46439 -33.31903 -31.44172 -31.02689 -28.50064 -27.58292 -27.13564 -26.65179 -26.00330 -24.55779 -23.84266 -22.01786 -21.24514 -19.48429 -18.65702 -18.49093 -17.26808 -16.57521 -16.48801 -16.05143 -15.54409 -15.47473 -15.13163 -14.87644 -14.53748 -14.34766 -13.93011 -13.77645 -13.61833 -13.35645 -13.16455 -12.93904 -12.71430 -12.37318 -12.16566 -11.94009 -11.80617 -11.54859 -11.37817 -11.28070 -11.23508 -11.12204 -10.84663 -10.75879 -10.52500 -10.25634 -10.06347 -9.96175 -9.79203 -9.77638 -9.54296 -9.39506 -9.04709 -8.93000 -8.64484 -6.98542 -5.81095 -3.10959 0.20987 1.14914 1.52941 2.35771 3.25081 3.32998 3.40265 3.45528 3.46925 3.84404 4.30940 4.53201 4.87056 4.91619 4.93041 5.01589 5.09426 5.19633 5.28805 5.39190 5.50470 5.51129 5.55723 5.64798 5.65983 5.70154 5.78116 5.89184 5.90681 5.97512 6.04855 6.07797 6.12350 6.17020 6.30748 6.42879 6.45580 6.48214 6.63644 6.71125 6.89416 7.13269 7.50430 7.65089 7.72419 8.35766 8.37266 9.48402 10.03976 10.39235 11.41074 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.004141 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.501061 B = 6759.745884 C = 8377.704619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.131 3.869 4 C 0.131 3.869 5 N -0.465 5.465 6 C 0.021 3.979 7 S 0.191 5.809 8 C -0.262 4.262 9 C 0.597 3.403 10 O -0.519 6.519 11 N -0.700 5.700 12 C 0.150 3.850 13 H 0.090 0.910 14 C 0.141 3.859 15 N -0.732 5.732 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.077 4.077 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.140 4.140 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.206 0.794 34 H 0.401 0.599 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.055 -13.674 7.803 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.298 6.298 3 C 0.052 3.948 4 C -0.008 4.008 5 N -0.179 5.179 6 C -0.274 4.274 7 S 0.447 5.553 8 C -0.387 4.387 9 C 0.381 3.619 10 O -0.398 6.398 11 N -0.349 5.349 12 C 0.046 3.954 13 H 0.108 0.892 14 C 0.013 3.987 15 N -0.377 5.377 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.078 4.078 25 C -0.199 4.199 26 C -0.187 4.187 27 C -0.198 4.198 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.222 0.778 34 H 0.236 0.764 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.853 -13.794 7.560 16.783 hybrid contribution 0.246 1.066 0.071 1.096 sum -5.607 -12.728 7.631 15.864 Atomic orbital electron populations 1.22692 0.80737 1.02507 1.00086 1.87871 1.19737 1.26719 1.95512 1.21008 0.85243 0.85941 1.02591 1.20146 0.97037 0.98278 0.85317 1.66007 1.05019 1.15647 1.31202 1.28646 0.95185 1.02783 1.00788 1.84202 1.05244 1.63178 1.02676 1.25741 0.96688 1.16732 0.99523 1.16528 0.86278 0.76805 0.82244 1.90765 1.14344 1.50018 1.84665 1.45834 1.09999 1.73284 1.05822 1.21354 0.98387 0.95643 0.80048 0.89196 1.21112 0.93581 0.88878 0.95105 1.42364 1.45819 1.18249 1.31220 1.19197 1.12117 1.00177 1.05872 0.91145 1.24732 1.00261 0.97832 0.97828 1.69664 1.45479 1.19170 1.23515 0.86213 0.81482 0.79767 0.78831 1.21728 1.21794 1.20753 1.20911 0.95952 0.94962 0.96008 1.21919 0.97622 0.98599 1.01789 1.21883 0.98367 0.99598 0.98805 1.21877 1.01245 1.01432 0.95208 0.89827 0.94317 0.93559 0.92094 0.88716 0.77779 0.76402 0.95315 0.94475 0.78104 0.93489 0.93017 0.93075 0.91852 0.91968 0.93969 0.92816 0.91896 0.92846 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.64 10.69 -35.23 -0.38 -6.02 16 3 C 0.13 1.93 5.74 36.01 0.21 2.13 16 4 C 0.13 2.03 6.42 -83.90 -0.54 1.49 16 5 N -0.46 -6.69 10.50 -11.54 -0.12 -6.81 16 6 C 0.02 0.24 12.22 51.75 0.63 0.87 16 7 S 0.19 2.35 22.35 -107.50 -2.40 -0.06 16 8 C -0.26 -4.06 6.48 -37.09 -0.24 -4.30 16 9 C 0.60 10.02 6.13 -12.85 -0.08 9.94 16 10 O -0.52 -9.43 11.38 5.20 0.06 -9.37 16 11 N -0.70 -11.29 3.64 -55.11 -0.20 -11.50 16 12 C 0.15 2.46 1.69 -67.93 -0.11 2.34 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 14 C 0.14 2.64 5.10 -4.04 -0.02 2.62 16 15 N -0.73 -17.60 5.43 -59.91 -0.33 -17.93 16 16 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.08 -1.04 0.62 -154.51 -0.10 -1.14 16 25 C -0.14 -1.77 7.97 37.16 0.30 -1.47 16 26 C -0.13 -1.82 6.99 37.16 0.26 -1.56 16 27 C -0.14 -1.73 8.12 37.15 0.30 -1.43 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.48 6.01 -51.93 -0.31 1.17 16 33 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.40 6.34 7.79 -40.82 -0.32 6.03 16 35 H 0.03 0.53 6.17 -51.93 -0.32 0.21 16 36 H 0.04 0.70 6.71 -51.93 -0.35 0.36 16 37 H 0.38 9.97 7.33 -40.82 -0.30 9.67 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.05 0.65 7.60 -51.93 -0.39 0.25 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 42 H 0.06 0.95 7.52 -51.93 -0.39 0.56 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.83 5.77 -51.93 -0.30 0.53 16 45 H 0.06 0.79 6.55 -51.93 -0.34 0.45 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -31.98 386.61 -7.46 -39.44 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -7.10 Total: 12.30 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 1.47 Total: 3.98 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.08 Total: -62.93 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.32 Total: -15.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.40 Total: -0.06 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.98 -7.46 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279009512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.768 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds