Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47043 * 2 1 4 4 C 1.50703 * 109.46927 * 119.99566 * 2 1 3 5 5 S 1.70941 * 125.58905 * 295.16691 * 4 2 1 6 6 C 1.70774 * 91.12520 * 180.18247 * 5 4 2 7 7 N 1.28645 * 110.56260 * 359.82137 * 6 5 4 8 8 C 1.33557 * 115.76787 * 0.02562 * 7 6 5 9 9 C 1.47264 * 123.14534 * 179.97438 * 8 7 6 10 10 O 1.21626 * 119.99869 * 104.80887 * 9 8 7 11 11 N 1.34776 * 119.99558 * 284.54019 * 9 8 7 12 12 C 1.46495 * 120.00454 * 355.23120 * 11 9 8 13 13 C 1.46507 * 119.99679 * 175.23195 * 11 9 8 14 14 C 1.53001 * 109.47131 * 89.99882 * 13 11 9 15 15 O 1.42897 * 109.47137 * 64.99695 * 14 13 11 16 16 C 1.42907 * 114.00016 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47062 * 180.02562 * 16 15 14 18 18 N 1.46502 * 109.46567 * 65.00332 * 17 16 15 19 19 C 1.36945 * 119.99485 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99900 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00051 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00042 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47137 * 60.00009 * 23 21 19 25 25 H 1.48496 * 109.47142 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47390 * 300.00527 * 23 21 19 27 27 H 1.08999 * 109.46875 * 300.00098 * 1 2 3 28 28 H 1.08998 * 109.46988 * 60.00146 * 1 2 3 29 29 H 1.09000 * 109.46954 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47343 * 239.99975 * 2 1 3 31 31 H 1.08997 * 109.47166 * 300.00328 * 3 2 1 32 32 H 1.09008 * 109.47230 * 60.00006 * 3 2 1 33 33 H 1.08997 * 109.46940 * 179.97438 * 3 2 1 34 34 H 1.07999 * 124.71701 * 179.82356 * 6 5 4 35 35 H 1.08999 * 109.47365 * 94.72369 * 12 11 9 36 36 H 1.08995 * 109.47209 * 214.72778 * 12 11 9 37 37 H 1.09008 * 109.46743 * 334.72280 * 12 11 9 38 38 H 1.08993 * 109.46924 * 209.99485 * 13 11 9 39 39 H 1.09002 * 109.47024 * 330.00180 * 13 11 9 40 40 H 1.08998 * 109.47498 * 185.00144 * 14 13 11 41 41 H 1.09004 * 109.47033 * 305.00140 * 14 13 11 42 42 H 1.08994 * 109.47062 * 300.00556 * 16 15 14 43 43 H 1.09005 * 109.46764 * 60.00775 * 16 15 14 44 44 H 1.08998 * 109.47104 * 185.00332 * 17 16 15 45 45 H 1.09002 * 109.46952 * 305.00412 * 17 16 15 46 46 H 0.96990 * 120.00548 * 359.97438 * 18 17 16 47 47 H 0.96996 * 120.00382 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 16 1.8065 -0.1881 2.8425 6 6 2.6679 -1.5380 3.4360 7 7 3.0637 -2.2838 2.4655 8 6 2.7336 -1.8663 1.2405 9 6 3.1034 -2.5942 0.0149 10 8 2.2647 -3.2377 -0.5867 11 7 4.3699 -2.5429 -0.4431 12 6 5.3533 -1.6809 0.2172 13 6 4.7633 -3.3493 -1.6013 14 6 4.5385 -2.5446 -2.8830 15 8 5.4124 -1.4141 -2.8950 16 6 5.2827 -0.5914 -4.0563 17 6 6.2608 0.5814 -3.9625 18 7 7.6351 0.0749 -3.9979 19 6 8.6883 0.9474 -3.9277 20 1 8.5058 2.0088 -3.8466 21 6 9.9904 0.4676 -3.9607 22 7 10.2128 -0.8258 -4.0600 23 14 11.4270 1.6577 -3.8656 24 1 11.3569 2.4175 -2.5916 25 1 12.7025 0.8993 -3.9207 26 1 11.3637 2.6026 -5.0095 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 2.8544 -1.7377 4.4809 35 1 5.9130 -2.2627 0.9495 36 1 6.0395 -1.2764 -0.5268 37 1 4.8389 -0.8619 0.7202 38 1 5.8173 -3.6139 -1.5186 39 1 4.1618 -4.2578 -1.6325 40 1 4.7465 -3.1739 -3.7483 41 1 3.5037 -2.2042 -2.9216 42 1 5.5064 -1.1804 -4.9457 43 1 4.2633 -0.2105 -4.1196 44 1 6.1005 1.2564 -4.8031 45 1 6.0955 1.1185 -3.0285 46 1 7.7990 -0.8782 -4.0711 47 1 11.1227 -1.1612 -4.0827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279450377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = -28.538715 kcal Electronic energy + Delta-G solvation = -28245.814523 eV Core-core repulsion = 24363.108598 eV Total energy + Delta-G solvation = -3882.705925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88614 -38.95854 -37.64325 -36.11654 -35.54821 -34.35034 -31.58524 -30.61511 -29.50091 -27.62563 -27.47211 -26.66642 -25.77655 -23.67975 -23.45929 -21.88692 -21.45943 -21.11349 -18.86377 -18.19175 -17.22119 -17.15100 -16.76500 -16.11934 -15.81904 -15.59924 -14.96582 -14.74359 -14.49858 -14.43589 -14.11462 -13.82918 -13.77695 -13.37102 -13.08741 -13.00072 -12.87327 -12.60625 -12.54341 -12.33712 -12.23565 -11.82030 -11.77904 -11.64660 -11.54772 -11.35578 -11.15670 -10.90212 -10.77658 -10.50251 -10.19717 -10.03321 -10.00762 -9.70098 -9.68761 -9.22665 -9.13385 -8.85501 -8.67923 -6.87203 -5.71961 -3.00178 0.35279 0.97263 1.37058 2.12251 2.51786 2.99175 3.45768 3.49977 3.51233 3.99054 4.02427 4.26433 4.52155 4.62578 4.67644 4.79097 5.01743 5.15750 5.16610 5.18542 5.29286 5.31697 5.44577 5.49973 5.52564 5.55891 5.58537 5.60293 5.65735 5.68063 5.74459 5.74993 5.86995 5.89973 5.93878 5.95527 6.07434 6.36008 6.44858 6.61358 6.75386 7.23042 7.25664 7.59685 7.71906 7.98614 8.46674 9.58107 10.16793 10.52839 11.50780 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.002754 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.379095 B =10164.881012 C =10407.777115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.148 4.148 4 C -0.201 4.201 5 S 0.202 5.798 6 C -0.006 4.006 7 N -0.433 5.433 8 C 0.021 3.979 9 C 0.599 3.401 10 O -0.533 6.533 11 N -0.588 5.588 12 C 0.083 3.917 13 C 0.120 3.880 14 C 0.045 3.955 15 O -0.370 6.370 16 C 0.059 3.941 17 C 0.156 3.844 18 N -0.727 5.727 19 C -0.240 4.240 20 H 0.068 0.932 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.204 0.796 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.024 0.976 46 H 0.387 0.613 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.927 0.357 13.750 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 C -0.205 4.205 4 C -0.324 4.324 5 S 0.457 5.543 6 C -0.305 4.305 7 N -0.147 5.147 8 C -0.114 4.114 9 C 0.383 3.617 10 O -0.409 6.409 11 N -0.319 5.319 12 C -0.059 4.059 13 C -0.002 4.002 14 C -0.033 4.033 15 O -0.289 6.289 16 C -0.018 4.018 17 C 0.028 3.972 18 N -0.372 5.372 19 C -0.371 4.371 20 H 0.086 0.914 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.221 0.779 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.221 0.779 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.272 0.510 14.217 25.591 hybrid contribution 1.112 -0.294 -0.778 1.389 sum -20.160 0.216 13.439 24.230 Atomic orbital electron populations 1.21897 0.93211 1.02694 1.02368 1.19711 0.96399 0.95805 0.92529 1.21949 1.02101 0.93936 1.02544 1.25504 1.05343 0.99970 1.01617 1.82726 1.50092 1.25739 0.95694 1.28371 1.02622 0.95895 1.03602 1.66984 1.20132 1.29989 0.97570 1.20167 1.03040 0.95423 0.92816 1.17139 0.82298 0.79785 0.82517 1.90803 1.49145 1.42236 1.58716 1.47631 1.09430 1.44144 1.30740 1.21864 0.92277 0.93364 0.98438 1.21623 1.02261 0.93264 0.83064 1.22851 0.93841 0.89134 0.97474 1.88000 1.60925 1.37774 1.42238 1.22776 0.98147 0.93033 0.87843 1.20674 0.85542 0.92631 0.98358 1.42278 0.98979 1.07110 1.88793 1.19186 0.85680 0.89819 1.42396 0.91365 1.24721 0.97252 0.95861 1.03095 1.69656 1.19774 1.11201 1.57444 0.86286 0.82229 0.79944 0.77820 1.21311 1.21713 1.21344 0.92393 0.91405 0.91938 0.89158 0.91241 0.92325 0.91707 0.77945 0.92505 0.88566 0.92056 0.88735 0.88606 0.92415 0.93493 0.93390 0.94064 0.95161 0.95769 0.77913 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.15 37.16 0.34 -0.88 16 2 C -0.02 -0.24 3.19 -91.77 -0.29 -0.53 16 3 C -0.15 -1.27 9.05 37.16 0.34 -0.94 16 4 C -0.20 -2.19 5.03 -35.38 -0.18 -2.37 16 5 S 0.20 1.55 22.45 -107.50 -2.41 -0.87 16 6 C -0.01 -0.05 12.17 51.43 0.63 0.57 16 7 N -0.43 -5.43 10.68 -12.36 -0.13 -5.57 16 8 C 0.02 0.28 4.53 -84.53 -0.38 -0.10 16 9 C 0.60 9.12 6.37 -12.59 -0.08 9.04 16 10 O -0.53 -9.34 16.74 5.25 0.09 -9.26 16 11 N -0.59 -8.40 2.84 -182.91 -0.52 -8.92 16 12 C 0.08 1.13 10.13 59.84 0.61 1.74 16 13 C 0.12 1.63 5.80 -4.04 -0.02 1.61 16 14 C 0.05 0.64 6.28 37.16 0.23 0.88 16 15 O -0.37 -6.40 9.04 -35.23 -0.32 -6.72 16 16 C 0.06 0.99 6.07 37.16 0.23 1.22 16 17 C 0.16 3.19 6.65 -4.04 -0.03 3.16 16 18 N -0.73 -18.78 5.55 -59.90 -0.33 -19.11 16 19 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.10 7.17 -51.93 -0.37 0.73 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.42 7.85 -51.92 -0.41 0.02 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.49 7.04 -51.93 -0.37 1.13 16 37 H 0.06 0.79 6.80 -51.92 -0.35 0.44 16 38 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.10 1.23 7.50 -51.93 -0.39 0.84 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.39 10.61 7.67 -40.82 -0.31 10.30 16 47 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 405.16 15.07 6.11 6.11 Total: -1.00 -34.47 405.16 -8.35 -42.81 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.66 Total: 5.76 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 1.14 Total: 5.99 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.26 Total: -61.30 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.23 Total: -15.97 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.41 Total: -0.87 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.47 -8.35 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279450377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.276 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds