Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47059 * 2 1 4 4 C 1.50699 * 109.46694 * 120.00030 * 2 1 3 5 5 N 1.29426 * 124.80879 * 300.01666 * 4 2 1 6 6 C 1.30939 * 117.36834 * 179.97438 * 5 4 2 7 7 C 1.35663 * 114.19253 * 0.02562 * 6 5 4 8 8 C 1.46676 * 126.13118 * 180.02562 * 7 6 5 9 9 O 1.21688 * 120.00123 * 352.75734 * 8 7 6 10 10 N 1.34787 * 119.99931 * 172.76132 * 8 7 6 11 11 C 1.46500 * 119.99841 * 2.82050 * 10 8 7 12 12 C 1.46496 * 119.99877 * 182.82316 * 10 8 7 13 13 C 1.52999 * 109.47466 * 89.99801 * 12 10 8 14 14 O 1.42902 * 109.47072 * 64.99756 * 13 12 10 15 15 C 1.42894 * 114.00182 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47515 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.47150 * 64.99670 * 16 15 14 18 18 C 1.36936 * 120.00366 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99626 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00136 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00044 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00001 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46783 * 90.00209 * 22 20 18 24 24 H 1.48498 * 109.46887 * 210.00107 * 22 20 18 25 25 H 1.48494 * 109.47435 * 329.99977 * 22 20 18 26 26 S 1.70958 * 124.80466 * 119.72318 * 4 2 1 27 27 H 1.09004 * 109.47314 * 300.00181 * 1 2 3 28 28 H 1.09000 * 109.47630 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47209 * 59.99765 * 1 2 3 30 30 H 1.08997 * 109.46818 * 239.99376 * 2 1 3 31 31 H 1.09010 * 109.46673 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47190 * 299.99687 * 3 2 1 33 33 H 1.08997 * 109.47615 * 60.00501 * 3 2 1 34 34 H 1.08000 * 122.90480 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47232 * 53.94967 * 11 10 8 36 36 H 1.08995 * 109.47038 * 173.95206 * 11 10 8 37 37 H 1.09004 * 109.47126 * 293.94930 * 11 10 8 38 38 H 1.09007 * 109.47056 * 209.99760 * 12 10 8 39 39 H 1.09008 * 109.47376 * 329.99628 * 12 10 8 40 40 H 1.08997 * 109.47059 * 184.99987 * 13 12 10 41 41 H 1.09001 * 109.46987 * 305.00392 * 13 12 10 42 42 H 1.08998 * 109.46971 * 300.00521 * 15 14 13 43 43 H 1.09003 * 109.47396 * 59.99829 * 15 14 13 44 44 H 1.08992 * 109.47149 * 185.00191 * 16 15 14 45 45 H 1.09000 * 109.46793 * 304.99838 * 16 15 14 46 46 H 0.97010 * 119.99966 * 0.02562 * 17 16 15 47 47 H 0.96995 * 119.99906 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.7772 -0.3504 2.4472 6 6 2.2895 -1.0758 3.4095 7 6 3.0325 -2.1260 2.9788 8 6 3.7224 -3.1032 3.8276 9 8 3.7670 -2.9385 5.0324 10 7 4.3070 -4.1837 3.2730 11 6 4.3070 -4.3504 1.8175 12 6 4.9422 -5.1914 4.1257 13 6 3.9149 -6.2599 4.5048 14 8 3.5036 -6.9631 3.3307 15 6 2.5390 -7.9885 3.5753 16 6 2.1744 -8.6711 2.2554 17 7 3.3501 -9.3640 1.7228 18 6 3.2635 -10.0503 0.5410 19 1 2.3284 -10.0803 0.0013 20 6 4.3774 -10.7072 0.0367 21 7 4.2943 -11.3664 -1.0995 22 14 5.9948 -10.6546 0.9698 23 1 6.0577 -11.7974 1.9161 24 1 7.1236 -10.7447 0.0091 25 1 6.0889 -9.3801 1.7259 26 16 3.0136 -2.1102 1.2168 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.1339 -0.8571 4.4556 35 1 4.7233 -3.4583 1.3496 36 1 4.9124 -5.2166 1.5510 37 1 3.2851 -4.5003 1.4690 38 1 5.7675 -5.6561 3.5860 39 1 5.3218 -4.7153 5.0299 40 1 4.3625 -6.9603 5.2098 41 1 3.0490 -5.7842 4.9653 42 1 2.9577 -8.7249 4.2613 43 1 1.6447 -7.5484 4.0164 44 1 1.3750 -9.3917 2.4278 45 1 1.8392 -7.9211 1.5391 46 1 4.1901 -9.3367 2.2074 47 1 5.0726 -11.8258 -1.4517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279464874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = -22.751621 kcal Electronic energy + Delta-G solvation = -27392.724182 eV Core-core repulsion = 23510.269204 eV Total energy + Delta-G solvation = -3882.454977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50348 -39.65533 -37.89730 -35.86440 -35.70753 -34.59767 -31.81210 -31.04939 -29.57199 -28.10909 -27.55268 -27.07510 -25.94307 -23.76918 -23.30583 -22.25027 -21.16853 -20.87145 -18.74893 -18.48848 -17.65100 -17.04009 -16.78519 -16.29593 -16.09224 -15.77199 -15.25734 -14.85153 -14.64990 -14.56853 -14.31285 -14.08443 -13.73650 -13.50092 -13.32138 -13.15603 -12.99932 -12.76383 -12.66279 -12.49970 -12.09938 -12.06882 -11.99801 -11.75394 -11.62282 -11.57229 -11.39417 -11.16505 -10.87387 -10.56105 -10.29133 -10.12360 -9.73234 -9.69886 -9.60018 -9.43089 -9.29499 -8.91327 -8.79040 -7.21936 -5.76444 -3.11148 0.00971 0.94429 1.37097 2.21289 2.68536 2.97160 3.37657 3.41809 3.45119 3.71147 3.82224 4.29439 4.41346 4.60067 4.62488 4.66098 4.85441 4.96477 5.00943 5.07302 5.10384 5.22470 5.24263 5.27183 5.32274 5.38888 5.44766 5.45242 5.53199 5.53962 5.55227 5.65511 5.66874 5.75593 5.76696 5.83659 5.96194 5.98277 6.21504 6.48686 6.62279 7.01744 7.39338 7.40538 7.82071 7.99722 8.42593 9.22537 9.94879 10.15882 11.42070 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.002709 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.709448 B =10334.402056 C =11429.921379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.021 4.021 3 C -0.140 4.140 4 C 0.036 3.964 5 N -0.480 5.480 6 C 0.122 3.878 7 C -0.300 4.300 8 C 0.595 3.405 9 O -0.533 6.533 10 N -0.599 5.599 11 C 0.070 3.930 12 C 0.121 3.879 13 C 0.042 3.958 14 O -0.374 6.374 15 C 0.055 3.945 16 C 0.160 3.840 17 N -0.751 5.751 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.936 5.936 22 Si 0.884 3.116 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.274 1.274 26 S 0.202 5.798 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.184 0.816 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.041 0.959 45 H 0.033 0.967 46 H 0.364 0.636 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 24.584 6.048 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 C -0.199 4.199 4 C -0.237 4.237 5 N -0.194 5.194 6 C -0.037 4.037 7 C -0.424 4.424 8 C 0.383 3.617 9 O -0.412 6.412 10 N -0.331 5.331 11 C -0.074 4.074 12 C -0.001 4.001 13 C -0.036 4.036 14 O -0.294 6.294 15 C -0.022 4.022 16 C 0.033 3.967 17 N -0.397 5.397 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.584 5.584 22 Si 0.714 3.286 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.200 1.200 26 S 0.462 5.538 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.201 0.799 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.197 0.803 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.815 24.441 5.523 25.214 hybrid contribution 0.920 -0.058 1.694 1.929 sum -1.895 24.382 7.217 25.498 Atomic orbital electron populations 1.21809 0.92603 1.02603 1.02931 1.19905 0.97184 0.96212 0.90957 1.21803 1.01138 0.93961 1.02952 1.27990 0.99564 0.99108 0.97078 1.66188 1.23778 1.30847 0.98537 1.22117 0.92262 0.89014 1.00276 1.25685 1.13782 1.06309 0.96643 1.16788 0.78068 0.80188 0.86681 1.90819 1.60393 1.76331 1.13705 1.47565 1.56014 1.21650 1.07828 1.21958 1.04032 1.02580 0.78864 1.21650 0.94892 0.87446 0.96150 1.22890 0.97803 0.93978 0.88906 1.87984 1.60982 1.49945 1.30448 1.22845 0.90909 0.89284 0.99166 1.20659 0.90863 0.93824 0.91395 1.42631 1.08469 1.62439 1.26172 1.19067 0.98150 1.23194 0.96783 0.89303 1.24660 0.97593 0.99944 0.97036 1.69705 1.29842 1.38391 1.20458 0.86539 0.84864 0.77816 0.79358 1.21239 1.21810 1.20019 1.84631 1.44697 1.22968 1.01506 0.91422 0.92334 0.91480 0.89085 0.92532 0.91503 0.91408 0.79872 0.91909 0.87616 0.90769 0.88947 0.88158 0.92338 0.93217 0.93407 0.93499 0.94162 0.94878 0.80349 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.17 37.16 0.34 -0.61 16 2 C -0.02 -0.15 3.35 -91.78 -0.31 -0.45 16 3 C -0.14 -0.88 9.17 37.15 0.34 -0.54 16 4 C 0.04 0.35 5.90 -13.29 -0.08 0.27 16 5 N -0.48 -5.37 10.49 -11.50 -0.12 -5.49 16 6 C 0.12 1.40 11.10 -18.85 -0.21 1.19 16 7 C -0.30 -3.53 6.33 -37.10 -0.23 -3.77 16 8 C 0.60 7.94 7.64 -12.85 -0.10 7.85 16 9 O -0.53 -8.37 16.44 5.20 0.09 -8.28 16 10 N -0.60 -7.29 2.84 -183.12 -0.52 -7.81 16 11 C 0.07 0.76 8.39 59.85 0.50 1.26 16 12 C 0.12 1.40 5.82 -4.04 -0.02 1.37 16 13 C 0.04 0.54 6.28 37.16 0.23 0.77 16 14 O -0.37 -5.90 9.85 -35.23 -0.35 -6.24 16 15 C 0.05 0.85 6.07 37.16 0.23 1.08 16 16 C 0.16 3.08 6.65 -4.04 -0.03 3.05 16 17 N -0.75 -17.92 5.35 -59.91 -0.32 -18.24 16 18 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 19 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 20 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 21 N -0.94 -29.33 13.97 55.49 0.78 -28.56 16 22 Si 0.88 22.01 27.73 -169.99 -4.71 17.30 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.27 -6.42 6.52 56.52 0.37 -6.05 16 26 S 0.20 1.89 17.82 -107.50 -1.92 -0.03 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.06 0.57 5.89 -34.98 -0.21 0.37 16 36 H 0.11 1.20 7.76 -51.93 -0.40 0.80 16 37 H 0.07 0.84 7.00 -51.93 -0.36 0.48 16 38 H 0.09 0.99 7.88 -51.92 -0.41 0.58 16 39 H 0.10 1.09 7.38 -51.92 -0.38 0.71 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.36 8.56 5.53 -40.82 -0.23 8.33 16 47 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -34.41 398.76 -8.16 -42.57 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.50 Total: 4.29 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 0.41 Total: 4.47 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.19 Total: -60.09 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.26 Total: -14.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.92 Total: -0.03 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.41 -8.16 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279464874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.814 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds