Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35967 * 116.99937 * 2 1 4 4 C 1.37570 * 120.82091 * 180.02562 * 3 2 1 5 5 C 1.38042 * 114.24502 * 180.02562 * 4 3 2 6 6 C 1.47111 * 127.75757 * 180.02562 * 5 4 3 7 7 O 1.21637 * 119.99848 * 352.21987 * 6 5 4 8 8 N 1.34776 * 120.00339 * 172.22561 * 6 5 4 9 9 C 1.46498 * 119.99492 * 1.25427 * 8 6 5 10 10 C 1.46498 * 120.00458 * 181.24840 * 8 6 5 11 11 C 1.53004 * 109.46738 * 89.99760 * 10 8 6 12 12 C 1.52997 * 109.46896 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47581 * 305.00397 * 12 11 10 14 14 N 1.46506 * 109.46963 * 65.00345 * 12 11 10 15 15 C 1.36941 * 119.99757 * 204.99464 * 14 12 11 16 16 H 1.08001 * 119.99895 * 0.02562 * 15 14 12 17 17 C 1.38805 * 119.99813 * 179.97438 * 15 14 12 18 18 N 1.31627 * 120.00356 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00330 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47028 * 90.00030 * 19 17 15 21 21 H 1.48491 * 109.47436 * 210.00129 * 19 17 15 22 22 H 1.48501 * 109.46761 * 330.00503 * 19 17 15 23 23 C 1.52999 * 109.47279 * 185.00458 * 12 11 10 24 24 C 1.52997 * 109.47421 * 59.99975 * 23 12 11 25 25 C 1.53003 * 109.47240 * 180.02562 * 23 12 11 26 26 S 1.77231 * 104.48147 * 359.97438 * 5 4 3 27 27 N 1.30356 * 120.82569 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47051 * 299.99962 * 1 2 3 30 30 H 1.08996 * 109.47134 * 59.99792 * 1 2 3 31 31 H 1.07997 * 122.87568 * 0.04470 * 4 3 2 32 32 H 1.08993 * 109.47700 * 83.70504 * 9 8 6 33 33 H 1.09003 * 109.47103 * 203.70344 * 9 8 6 34 34 H 1.09004 * 109.47359 * 323.69608 * 9 8 6 35 35 H 1.08994 * 109.47042 * 210.00092 * 10 8 6 36 36 H 1.08995 * 109.47130 * 330.00424 * 10 8 6 37 37 H 1.08994 * 109.47625 * 299.99975 * 11 10 8 38 38 H 1.08995 * 109.46767 * 60.00442 * 11 10 8 39 39 H 0.97000 * 119.99880 * 24.99968 * 14 12 11 40 40 H 0.96995 * 120.00437 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.46754 * 299.99923 * 23 12 11 42 42 H 1.08997 * 109.47275 * 59.99957 * 24 23 12 43 43 H 1.08995 * 109.47707 * 180.02562 * 24 23 12 44 44 H 1.09002 * 109.47235 * 300.00648 * 24 23 12 45 45 H 1.08997 * 109.46983 * 60.00248 * 25 23 12 46 46 H 1.09005 * 109.46450 * 179.97438 * 25 23 12 47 47 H 1.08997 * 109.46679 * 299.99568 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4190 1.3032 -0.0005 5 6 3.9007 2.5968 0.0001 6 6 5.3050 3.0351 -0.0007 7 8 6.1966 2.2199 0.1405 8 7 5.6036 4.3400 -0.1578 9 6 4.5289 5.3253 -0.3002 10 6 7.0029 4.7730 -0.1861 11 6 7.5162 4.7453 -1.6272 12 6 8.9777 5.1969 -1.6566 13 1 9.0656 6.1745 -1.1826 14 7 9.8032 4.2271 -0.9325 15 6 10.9931 4.6187 -0.3793 16 1 11.3228 5.6425 -0.4766 17 6 11.7750 3.7000 0.3072 18 7 11.3729 2.4522 0.4262 19 14 13.3979 4.2341 1.0624 20 1 13.1667 4.7022 2.4526 21 1 14.3390 3.0856 1.0769 22 1 13.9781 5.3394 0.2580 23 6 9.4539 5.2892 -3.1077 24 6 8.5918 6.3020 -3.8640 25 6 10.9156 5.7402 -3.1371 26 16 2.4472 3.6110 0.0006 27 7 1.3522 2.3148 0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0643 0.4372 -0.0017 32 1 4.1672 5.6137 0.6867 33 1 4.9091 6.2052 -0.8193 34 1 3.7107 4.8902 -0.8742 35 1 7.0774 5.7869 0.2069 36 1 7.6036 4.1008 0.4265 37 1 7.4417 3.7314 -2.0201 38 1 6.9154 5.4175 -2.2397 39 1 9.5069 3.3076 -0.8449 40 1 11.9194 1.8102 0.9056 41 1 9.3660 4.3116 -3.5817 42 1 8.6796 7.2796 -3.3900 43 1 8.9307 6.3674 -4.8978 44 1 7.5506 5.9803 -3.8429 45 1 11.5295 5.0183 -2.5985 46 1 11.2549 5.8055 -4.1710 47 1 11.0038 6.7177 -2.6630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282551270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = -10.189676 kcal Electronic energy + Delta-G solvation = -27736.093516 eV Core-core repulsion = 23854.183266 eV Total energy + Delta-G solvation = -3881.910251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44162 -39.79817 -37.41430 -36.64159 -35.58963 -32.99070 -32.13696 -31.03800 -29.62301 -28.32630 -27.25636 -26.46392 -25.82349 -24.30379 -22.96848 -21.80209 -20.74559 -19.38864 -19.18308 -18.53816 -17.88914 -17.08676 -16.52447 -16.33444 -16.11747 -15.59566 -15.01874 -14.87249 -14.35516 -13.97313 -13.83415 -13.73383 -13.63900 -13.42397 -13.23477 -13.16710 -12.70963 -12.46389 -12.29866 -11.97276 -11.83868 -11.65647 -11.60138 -11.36836 -11.18459 -10.88092 -10.77512 -10.72373 -10.48346 -10.30762 -10.23229 -10.06143 -9.99028 -9.90119 -9.77433 -9.39088 -8.88134 -8.69675 -8.50014 -6.85820 -5.67175 -2.95798 -0.04935 0.91629 1.33585 2.03621 2.57856 3.00347 3.10015 3.46979 3.52275 3.54351 4.19442 4.60923 4.64891 4.77805 4.84549 4.93073 5.02314 5.06393 5.23130 5.33066 5.36038 5.39925 5.50003 5.52930 5.62572 5.71559 5.79422 5.87050 5.89082 5.98883 6.21419 6.24200 6.30612 6.37173 6.40956 6.55070 6.67964 6.70669 6.77210 6.79876 6.88580 7.17090 7.25175 7.38156 7.77619 8.03172 8.50066 9.61315 10.20234 10.55127 11.54460 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002652 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.268050 B =10557.450831 C =11640.669931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.297 6.297 3 C 0.308 3.692 4 C -0.130 4.130 5 C -0.175 4.175 6 C 0.582 3.418 7 O -0.492 6.492 8 N -0.604 5.604 9 C 0.063 3.937 10 C 0.119 3.881 11 C -0.138 4.138 12 C 0.186 3.814 13 H 0.046 0.954 14 N -0.721 5.721 15 C -0.233 4.233 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.926 5.926 19 Si 0.899 3.101 20 H -0.292 1.292 21 H -0.293 1.293 22 H -0.283 1.283 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.140 4.140 26 S 0.294 5.706 27 N -0.539 5.539 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.179 0.821 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.028 0.972 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.261 4.172 -3.492 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.203 6.203 3 C 0.094 3.906 4 C -0.167 4.167 5 C -0.307 4.307 6 C 0.366 3.634 7 O -0.366 6.366 8 N -0.337 5.337 9 C -0.084 4.084 10 C -0.001 4.001 11 C -0.178 4.178 12 C 0.075 3.925 13 H 0.064 0.936 14 N -0.362 5.362 15 C -0.365 4.365 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.574 5.574 19 Si 0.730 3.270 20 H -0.219 1.219 21 H -0.220 1.220 22 H -0.209 1.209 23 C -0.134 4.134 24 C -0.203 4.203 25 C -0.197 4.197 26 S 0.445 5.555 27 N -0.378 5.378 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.196 0.804 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.047 0.953 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -23.014 5.098 -3.313 23.804 hybrid contribution 1.419 -1.376 0.353 2.008 sum -21.595 3.722 -2.960 22.113 Atomic orbital electron populations 1.22955 0.76811 1.03524 1.02455 1.86316 1.22914 1.22890 1.88176 1.19872 0.89696 0.85271 0.95751 1.20804 0.92477 0.98775 1.04614 1.26125 0.99314 0.97554 1.07679 1.16758 0.85237 0.82986 0.78442 1.90979 1.46421 1.51858 1.47323 1.47797 1.08560 1.05646 1.71723 1.22086 0.90042 0.93729 1.02496 1.21743 0.78200 1.01269 0.98914 1.22259 0.97804 1.02043 0.95660 1.20185 0.87815 0.93800 0.90701 0.93561 1.42500 1.21485 1.09163 1.63101 1.19167 0.96123 0.94803 1.26357 0.91144 1.24727 0.98856 0.95753 1.01576 1.69678 1.38581 1.02332 1.46842 0.86319 0.84192 0.77170 0.79284 1.21909 1.21961 1.20864 1.21786 0.95571 0.97771 0.98235 1.21924 0.99508 0.99468 0.99430 1.21826 0.96939 1.01640 0.99270 1.85203 0.89425 1.11087 1.69791 1.76323 1.28917 1.02268 1.30308 0.88062 0.92205 0.92191 0.80410 0.91344 0.88711 0.91362 0.90365 0.87617 0.91756 0.92022 0.77942 0.93601 0.92271 0.93349 0.93923 0.93280 0.89492 0.95318 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.43 101.05 1.05 1.34 16 2 O -0.30 -3.27 10.51 -19.64 -0.21 -3.48 16 3 C 0.31 3.68 7.36 -18.42 -0.14 3.55 16 4 C -0.13 -1.62 10.10 -39.90 -0.40 -2.02 16 5 C -0.18 -2.21 6.45 -36.05 -0.23 -2.44 16 6 C 0.58 8.91 7.66 -12.66 -0.10 8.81 16 7 O -0.49 -9.81 16.53 5.24 0.09 -9.72 16 8 N -0.60 -7.88 2.87 -182.97 -0.53 -8.41 16 9 C 0.06 0.53 9.04 59.85 0.54 1.07 16 10 C 0.12 1.83 5.28 -4.04 -0.02 1.81 16 11 C -0.14 -2.17 4.86 -26.73 -0.13 -2.30 16 12 C 0.19 3.44 2.02 -67.93 -0.14 3.30 16 13 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 14 N -0.72 -17.14 4.45 -53.42 -0.24 -17.38 16 15 C -0.23 -6.13 7.57 -15.06 -0.11 -6.25 16 16 H 0.07 1.80 7.40 -52.49 -0.39 1.42 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 19 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.11 -1.94 2.69 -90.62 -0.24 -2.18 16 24 C -0.15 -1.99 8.85 37.16 0.33 -1.66 16 25 C -0.14 -2.58 8.26 37.16 0.31 -2.27 16 26 S 0.29 2.92 19.22 -107.50 -2.07 0.85 16 27 N -0.54 -6.29 11.03 29.19 0.32 -5.97 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.07 0.48 7.96 -51.93 -0.41 0.07 16 33 H 0.09 0.63 8.02 -51.93 -0.42 0.21 16 34 H 0.07 0.53 4.56 -24.58 -0.11 0.42 16 35 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 36 H 0.11 2.09 7.01 -51.93 -0.36 1.73 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.80 6.18 -51.93 -0.32 0.48 16 39 H 0.39 10.26 7.80 -40.82 -0.32 9.94 16 40 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.61 6.32 -51.93 -0.33 0.28 16 45 H 0.09 1.92 6.01 -51.93 -0.31 1.61 16 46 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -32.28 391.63 -7.58 -39.85 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.17 Total: 8.13 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 0.62 Total: 0.30 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.28 Total: -59.03 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.12 Total: -13.20 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.07 Total: 0.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.28 -7.58 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282551270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.665 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds