Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35967 * 116.99937 * 2 1 4 4 C 1.37570 * 120.82091 * 180.02562 * 3 2 1 5 5 C 1.38042 * 114.24502 * 180.02562 * 4 3 2 6 6 C 1.47111 * 127.75757 * 180.02562 * 5 4 3 7 7 O 1.21637 * 119.99848 * 352.21987 * 6 5 4 8 8 N 1.34776 * 120.00339 * 172.22561 * 6 5 4 9 9 C 1.46498 * 119.99492 * 1.25427 * 8 6 5 10 10 C 1.46498 * 120.00458 * 181.24840 * 8 6 5 11 11 C 1.53004 * 109.46738 * 89.99760 * 10 8 6 12 12 C 1.52997 * 109.46896 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47581 * 305.00397 * 12 11 10 14 14 N 1.46506 * 109.46963 * 65.00345 * 12 11 10 15 15 C 1.36941 * 119.99757 * 204.99464 * 14 12 11 16 16 H 1.08001 * 119.99895 * 0.02562 * 15 14 12 17 17 C 1.38805 * 119.99813 * 179.97438 * 15 14 12 18 18 N 1.31627 * 120.00356 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00330 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47028 * 90.00030 * 19 17 15 21 21 H 1.48491 * 109.47436 * 210.00129 * 19 17 15 22 22 H 1.48501 * 109.46761 * 330.00503 * 19 17 15 23 23 C 1.52999 * 109.47279 * 185.00458 * 12 11 10 24 24 C 1.52997 * 109.47421 * 59.99975 * 23 12 11 25 25 C 1.53003 * 109.47240 * 180.02562 * 23 12 11 26 26 S 1.77231 * 104.48147 * 359.97438 * 5 4 3 27 27 N 1.30356 * 120.82569 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47051 * 299.99962 * 1 2 3 30 30 H 1.08996 * 109.47134 * 59.99792 * 1 2 3 31 31 H 1.07997 * 122.87568 * 0.04470 * 4 3 2 32 32 H 1.08993 * 109.47700 * 83.70504 * 9 8 6 33 33 H 1.09003 * 109.47103 * 203.70344 * 9 8 6 34 34 H 1.09004 * 109.47359 * 323.69608 * 9 8 6 35 35 H 1.08994 * 109.47042 * 210.00092 * 10 8 6 36 36 H 1.08995 * 109.47130 * 330.00424 * 10 8 6 37 37 H 1.08994 * 109.47625 * 299.99975 * 11 10 8 38 38 H 1.08995 * 109.46767 * 60.00442 * 11 10 8 39 39 H 0.97000 * 119.99880 * 24.99968 * 14 12 11 40 40 H 0.96995 * 120.00437 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.46754 * 299.99923 * 23 12 11 42 42 H 1.08997 * 109.47275 * 59.99957 * 24 23 12 43 43 H 1.08995 * 109.47707 * 180.02562 * 24 23 12 44 44 H 1.09002 * 109.47235 * 300.00648 * 24 23 12 45 45 H 1.08997 * 109.46983 * 60.00248 * 25 23 12 46 46 H 1.09005 * 109.46450 * 179.97438 * 25 23 12 47 47 H 1.08997 * 109.46679 * 299.99568 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4190 1.3032 -0.0005 5 6 3.9007 2.5968 0.0001 6 6 5.3050 3.0351 -0.0007 7 8 6.1966 2.2199 0.1405 8 7 5.6036 4.3400 -0.1578 9 6 4.5289 5.3253 -0.3002 10 6 7.0029 4.7730 -0.1861 11 6 7.5162 4.7453 -1.6272 12 6 8.9777 5.1969 -1.6566 13 1 9.0656 6.1745 -1.1826 14 7 9.8032 4.2271 -0.9325 15 6 10.9931 4.6187 -0.3793 16 1 11.3228 5.6425 -0.4766 17 6 11.7750 3.7000 0.3072 18 7 11.3729 2.4522 0.4262 19 14 13.3979 4.2341 1.0624 20 1 13.1667 4.7022 2.4526 21 1 14.3390 3.0856 1.0769 22 1 13.9781 5.3394 0.2580 23 6 9.4539 5.2892 -3.1077 24 6 8.5918 6.3020 -3.8640 25 6 10.9156 5.7402 -3.1371 26 16 2.4472 3.6110 0.0006 27 7 1.3522 2.3148 0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0643 0.4372 -0.0017 32 1 4.1672 5.6137 0.6867 33 1 4.9091 6.2052 -0.8193 34 1 3.7107 4.8902 -0.8742 35 1 7.0774 5.7869 0.2069 36 1 7.6036 4.1008 0.4265 37 1 7.4417 3.7314 -2.0201 38 1 6.9154 5.4175 -2.2397 39 1 9.5069 3.3076 -0.8449 40 1 11.9194 1.8102 0.9056 41 1 9.3660 4.3116 -3.5817 42 1 8.6796 7.2796 -3.3900 43 1 8.9307 6.3674 -4.8978 44 1 7.5506 5.9803 -3.8429 45 1 11.5295 5.0183 -2.5985 46 1 11.2549 5.8055 -4.1710 47 1 11.0038 6.7177 -2.6630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282551270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = -33.632007 kcal Electronic energy + Delta-G solvation = -27737.110052 eV Core-core repulsion = 23854.183266 eV Total energy + Delta-G solvation = -3882.926786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.38624 -40.86767 -38.88453 -37.54218 -36.79440 -34.86939 -33.33859 -32.30735 -31.28756 -29.07274 -28.28119 -27.62232 -27.16288 -25.66539 -24.50342 -23.01074 -21.91296 -20.67944 -20.36941 -19.55171 -19.04474 -18.73106 -17.38920 -17.30427 -17.25094 -16.79943 -16.62523 -15.75627 -15.66895 -15.47939 -15.27578 -15.05213 -14.70406 -14.48450 -14.39700 -14.25936 -14.06804 -13.51086 -13.46374 -13.03466 -12.97774 -12.93981 -12.84297 -12.68951 -12.53237 -12.43226 -12.19317 -12.09611 -11.98493 -11.73965 -11.67565 -11.59745 -11.38213 -11.20265 -11.08623 -10.88042 -10.77065 -9.83008 -9.36789 -8.85382 -7.81670 -5.08114 -1.02972 0.00827 0.47509 1.07737 1.48627 1.49521 1.57473 1.59382 1.88574 2.24825 2.62777 3.24468 3.50190 3.69810 3.96462 3.97591 4.07389 4.10282 4.23318 4.28427 4.31270 4.35859 4.46531 4.48332 4.53850 4.59850 4.70820 4.71904 4.75633 4.79917 4.86143 4.99318 5.03507 5.08451 5.16638 5.24074 5.30200 5.39029 5.47179 5.50142 5.62583 5.73880 5.83404 5.97543 6.16038 6.38688 6.89850 7.44414 8.23364 8.44888 9.41863 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002652 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.268050 B =10557.450831 C =11640.669931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.311 6.311 3 C 0.303 3.697 4 C -0.139 4.139 5 C -0.195 4.195 6 C 0.577 3.423 7 O -0.556 6.556 8 N -0.596 5.596 9 C 0.052 3.948 10 C 0.126 3.874 11 C -0.124 4.124 12 C 0.180 3.820 13 H 0.056 0.944 14 N -0.732 5.732 15 C -0.207 4.207 16 H 0.081 0.919 17 C -0.084 4.084 18 N -0.973 5.973 19 Si 0.959 3.041 20 H -0.291 1.291 21 H -0.305 1.305 22 H -0.267 1.267 23 C -0.110 4.110 24 C -0.136 4.136 25 C -0.136 4.136 26 S 0.373 5.627 27 N -0.551 5.551 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.169 0.831 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.103 0.897 39 H 0.368 0.632 40 H 0.244 0.756 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.046 0.954 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.715 7.740 -4.619 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.217 6.217 3 C 0.090 3.910 4 C -0.178 4.178 5 C -0.327 4.327 6 C 0.363 3.637 7 O -0.435 6.435 8 N -0.328 5.328 9 C -0.092 4.092 10 C 0.004 3.996 11 C -0.163 4.163 12 C 0.071 3.929 13 H 0.074 0.926 14 N -0.371 5.371 15 C -0.339 4.339 16 H 0.099 0.901 17 C -0.276 4.276 18 N -0.625 5.625 19 Si 0.790 3.210 20 H -0.219 1.219 21 H -0.233 1.233 22 H -0.192 1.192 23 C -0.131 4.131 24 C -0.193 4.193 25 C -0.194 4.194 26 S 0.525 5.475 27 N -0.392 5.392 28 H 0.146 0.854 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.186 0.814 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.121 0.879 39 H 0.199 0.801 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -25.528 8.774 -4.478 27.363 hybrid contribution 2.042 -2.354 0.628 3.179 sum -23.486 6.420 -3.850 24.650 Atomic orbital electron populations 1.23212 0.75040 1.05393 1.02541 1.86305 1.24715 1.22626 1.88046 1.19734 0.89373 0.85704 0.96167 1.20835 0.93004 0.98821 1.05096 1.25849 0.99187 0.98758 1.08887 1.17150 0.85784 0.83255 0.77536 1.90949 1.48491 1.53655 1.50399 1.47823 1.08857 1.05781 1.70293 1.22486 0.88863 0.93443 1.04424 1.21508 0.78964 1.01261 0.97875 1.22124 0.96485 1.01219 0.96447 1.20476 0.88736 0.92748 0.90891 0.92638 1.42727 1.21477 1.09282 1.63614 1.19529 0.96143 0.94717 1.23557 0.90118 1.25454 1.02357 0.95978 1.03771 1.69864 1.39878 1.03581 1.49169 0.85335 0.80594 0.76592 0.78523 1.21909 1.23282 1.19175 1.21676 0.95754 0.98193 0.97468 1.21820 0.99458 0.98599 0.99440 1.21750 0.97059 1.00656 0.99906 1.84813 0.86240 1.08760 1.67696 1.76220 1.29873 1.02883 1.30207 0.85422 0.92116 0.91989 0.81374 0.89212 0.85598 0.90538 0.87461 0.92924 0.94602 0.87854 0.80111 0.94746 0.94370 0.91855 0.92801 0.91515 0.93813 0.93456 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.43 113.37 1.18 1.63 16 2 O -0.31 -6.72 10.51 -93.17 -0.98 -7.70 16 3 C 0.30 7.10 7.36 84.75 0.62 7.73 16 4 C -0.14 -3.58 10.10 22.07 0.22 -3.36 16 5 C -0.20 -4.89 6.45 24.55 0.16 -4.73 16 6 C 0.58 18.15 7.66 86.57 0.66 18.81 16 7 O -0.56 -24.03 16.53 -4.15 -0.07 -24.10 16 8 N -0.60 -14.83 2.87 -851.04 -2.45 -17.27 16 9 C 0.05 0.67 9.04 127.77 1.16 1.83 16 10 C 0.13 3.76 5.28 86.38 0.46 4.22 16 11 C -0.12 -3.72 4.86 30.59 0.15 -3.57 16 12 C 0.18 6.49 2.02 44.99 0.09 6.58 16 13 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 14 N -0.73 -35.86 4.45 -322.93 -1.44 -37.30 16 15 C -0.21 -11.09 7.57 84.03 0.64 -10.45 16 16 H 0.08 4.09 7.40 -2.91 -0.02 4.07 16 17 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 18 N -0.97 -62.01 13.06 21.65 0.28 -61.73 16 19 Si 0.96 47.01 29.55 68.60 2.03 49.03 16 20 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 21 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C -0.11 -3.62 2.69 -10.79 -0.03 -3.65 16 24 C -0.14 -3.14 8.85 71.98 0.64 -2.50 16 25 C -0.14 -4.86 8.26 71.98 0.59 -4.26 16 26 S 0.37 6.42 19.22 -56.49 -1.09 5.34 16 27 N -0.55 -11.90 11.03 -175.22 -1.93 -13.83 16 28 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.17 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.09 0.86 7.96 -2.39 -0.02 0.84 16 33 H 0.13 0.94 8.02 -2.39 -0.02 0.92 16 34 H 0.08 0.88 4.56 -19.77 -0.09 0.79 16 35 H 0.11 2.56 8.07 -2.39 -0.02 2.54 16 36 H 0.05 2.19 7.01 -2.39 -0.02 2.17 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 2.24 6.18 -2.39 -0.01 2.23 16 39 H 0.37 20.75 7.80 -92.71 -0.72 20.03 16 40 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.04 1.41 8.14 -2.38 -0.02 1.40 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.32 6.32 -2.39 -0.02 1.30 16 45 H 0.04 1.93 6.01 -2.39 -0.01 1.91 16 46 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -76.34 391.63 1.55 -74.79 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.18 Total: 28.90 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 7.01 Total: 3.86 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -5.53 Total: -130.13 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.05 Total: -31.79 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.09 Total: 5.34 kcal Total: -76.34 1.55 -74.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282551270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.157 kcal (2) G-P(sol) polarization free energy of solvation -76.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds