Wall clock time and date at job start Sat Apr 11 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35964 * 116.99695 * 2 1 4 4 C 1.37561 * 120.82586 * 180.29326 * 3 2 1 5 5 C 1.38044 * 114.24908 * 180.21381 * 4 3 2 6 6 C 1.47117 * 127.75760 * 179.80513 * 5 4 3 7 7 O 1.21629 * 120.00256 * 6.69130 * 6 5 4 8 8 N 1.34779 * 119.99978 * 186.70212 * 6 5 4 9 9 C 1.46500 * 119.99994 * 5.75321 * 8 6 5 10 10 C 1.46498 * 120.00311 * 185.76268 * 8 6 5 11 11 C 1.52996 * 109.46927 * 269.99818 * 10 8 6 12 12 C 1.53003 * 109.47195 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47330 * 54.99199 * 12 11 10 14 14 N 1.46502 * 109.46897 * 294.99582 * 12 11 10 15 15 C 1.36935 * 119.99839 * 154.99737 * 14 12 11 16 16 H 1.07997 * 120.00226 * 0.02562 * 15 14 12 17 17 C 1.38816 * 119.99598 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00453 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47435 * 60.00037 * 19 17 15 21 21 H 1.48504 * 109.47367 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47494 * 300.00170 * 19 17 15 23 23 C 1.53004 * 109.47225 * 174.99625 * 12 11 10 24 24 C 1.52996 * 109.46811 * 299.99742 * 23 12 11 25 25 C 1.53001 * 109.46811 * 59.99863 * 23 12 11 26 26 S 1.77228 * 104.48067 * 359.54560 * 5 4 3 27 27 N 1.30372 * 120.82557 * 359.97297 * 3 2 1 28 28 H 1.09003 * 109.46836 * 60.00357 * 1 2 3 29 29 H 1.09002 * 109.46622 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46868 * 299.99722 * 1 2 3 31 31 H 1.08007 * 122.87910 * 0.04148 * 4 3 2 32 32 H 1.09001 * 109.47307 * 275.51009 * 9 8 6 33 33 H 1.09007 * 109.47219 * 35.50870 * 9 8 6 34 34 H 1.09002 * 109.47458 * 155.50778 * 9 8 6 35 35 H 1.08997 * 109.47613 * 149.99452 * 10 8 6 36 36 H 1.09006 * 109.46890 * 29.99595 * 10 8 6 37 37 H 1.08996 * 109.47692 * 59.99762 * 11 10 8 38 38 H 1.09007 * 109.46848 * 299.99163 * 11 10 8 39 39 H 0.97004 * 119.99963 * 335.00202 * 14 12 11 40 40 H 0.96995 * 120.00473 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.46829 * 179.97438 * 23 12 11 42 42 H 1.08996 * 109.47643 * 299.99878 * 24 23 12 43 43 H 1.08994 * 109.47574 * 60.00272 * 24 23 12 44 44 H 1.09004 * 109.46574 * 179.97438 * 24 23 12 45 45 H 1.08999 * 109.47273 * 60.00124 * 25 23 12 46 46 H 1.08999 * 109.46692 * 179.97438 * 25 23 12 47 47 H 1.08994 * 109.47176 * 299.99484 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4188 1.3033 -0.0060 5 6 3.9005 2.5970 -0.0005 6 6 5.3048 3.0354 -0.0007 7 8 6.1969 2.2186 -0.1288 8 7 5.6029 4.3421 0.1414 9 6 4.5393 5.3097 0.4218 10 6 6.9904 4.7949 0.0152 11 6 7.6667 4.7545 1.3870 12 6 9.1161 5.2268 1.2552 13 1 9.1362 6.2121 0.7894 14 7 9.8649 4.2793 0.4259 15 6 10.9779 4.6958 -0.2544 16 1 11.3040 5.7226 -0.1793 17 6 11.6877 3.7978 -1.0398 18 7 11.2907 2.5463 -1.1310 19 14 13.2065 4.3657 -1.9672 20 1 14.2148 4.8734 -1.0023 21 1 13.7782 3.2249 -2.7268 22 1 12.8338 5.4506 -2.9103 23 6 9.7551 5.3056 2.6431 24 6 8.9730 6.2952 3.5091 25 6 9.7268 3.9225 3.2968 26 16 2.4470 3.6111 -0.0010 27 7 1.3520 2.3150 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0644 0.4375 -0.0117 32 1 4.0719 5.6173 -0.5136 33 1 3.7911 4.8503 1.0679 34 1 4.9633 6.1816 0.9200 35 1 7.0063 5.8152 -0.3678 36 1 7.5251 4.1401 -0.6730 37 1 7.6509 3.7342 1.7701 38 1 7.1320 5.4094 2.0751 39 1 9.5722 3.3569 0.3586 40 1 11.7869 1.9187 -1.6794 41 1 10.7877 5.6416 2.5491 42 1 8.9931 7.2805 3.0435 43 1 7.9405 5.9588 3.6031 44 1 9.4280 6.3509 4.4981 45 1 10.2839 3.2176 2.6798 46 1 10.1824 3.9786 4.2854 47 1 8.6943 3.5862 3.3908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282551271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:53 Heat of formation + Delta-G solvation = -10.807924 kcal Electronic energy + Delta-G solvation = -27831.908334 eV Core-core repulsion = 23949.971275 eV Total energy + Delta-G solvation = -3881.937060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44916 -39.79636 -37.49948 -36.64879 -35.55974 -33.09958 -32.00402 -30.90189 -29.58847 -28.31285 -27.10692 -26.56130 -25.91119 -24.27712 -22.95803 -22.20683 -21.11087 -19.38610 -18.52878 -18.33451 -17.89165 -17.12697 -16.52427 -16.32907 -16.15127 -15.62900 -14.95199 -14.78612 -14.49584 -14.09523 -13.85950 -13.69632 -13.58442 -13.36410 -13.24058 -13.03953 -12.92648 -12.55154 -12.32042 -12.00475 -11.81136 -11.66199 -11.63502 -11.34282 -11.15116 -10.89012 -10.84729 -10.81135 -10.45670 -10.33185 -10.19970 -10.10039 -10.06119 -9.90282 -9.59747 -9.50821 -8.87895 -8.69205 -8.50480 -6.85183 -5.66783 -2.95832 -0.05442 0.91929 1.33528 2.02717 2.58605 3.00157 3.10324 3.47854 3.52591 3.53896 4.20702 4.61741 4.65621 4.79881 4.84041 4.92599 5.02000 5.08298 5.22718 5.34660 5.39508 5.42740 5.47932 5.50506 5.65920 5.71785 5.79194 5.86130 5.89879 5.95135 6.14013 6.23523 6.31035 6.36734 6.39000 6.45102 6.59240 6.71222 6.76404 6.85072 6.94134 7.12390 7.16685 7.26662 7.76903 8.03678 8.50686 9.62027 10.21125 10.55972 11.54815 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.002712 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.291883 B =10323.017100 C =11281.585899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.297 6.297 3 C 0.308 3.692 4 C -0.131 4.131 5 C -0.174 4.174 6 C 0.582 3.418 7 O -0.491 6.491 8 N -0.604 5.604 9 C 0.060 3.940 10 C 0.120 3.880 11 C -0.139 4.139 12 C 0.186 3.814 13 H 0.046 0.954 14 N -0.719 5.719 15 C -0.239 4.239 16 H 0.068 0.932 17 C -0.011 4.011 18 N -0.927 5.927 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.288 1.288 23 C -0.114 4.114 24 C -0.145 4.145 25 C -0.136 4.136 26 S 0.293 5.707 27 N -0.535 5.535 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.179 0.821 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.067 0.933 46 H 0.034 0.966 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.269 3.468 5.636 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.094 3.906 4 C -0.168 4.168 5 C -0.306 4.306 6 C 0.366 3.634 7 O -0.365 6.365 8 N -0.338 5.338 9 C -0.086 4.086 10 C -0.001 4.001 11 C -0.178 4.178 12 C 0.075 3.925 13 H 0.063 0.937 14 N -0.361 5.361 15 C -0.370 4.370 16 H 0.086 0.914 17 C -0.208 4.208 18 N -0.575 5.575 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.214 1.214 23 C -0.136 4.136 24 C -0.203 4.203 25 C -0.194 4.194 26 S 0.444 5.556 27 N -0.375 5.375 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.196 0.804 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.032 4.397 5.437 24.070 hybrid contribution 1.427 -1.348 -0.471 2.018 sum -21.605 3.049 4.967 22.377 Atomic orbital electron populations 1.22962 0.76792 1.03548 1.02467 1.86318 1.22928 1.22825 1.88168 1.19879 0.89714 0.85269 0.95740 1.20806 0.92458 0.98796 1.04720 1.26145 0.99375 0.97520 1.07548 1.16752 0.85210 0.82985 0.78477 1.90974 1.46383 1.51742 1.47413 1.47791 1.09667 1.05904 1.70412 1.22056 0.90640 0.94163 1.01710 1.21745 0.78031 1.00829 0.99452 1.22280 0.97122 1.02379 0.96039 1.20157 0.88397 0.93861 0.90088 0.93654 1.42476 1.30304 1.09525 1.53758 1.19141 1.02402 0.94816 1.20664 0.91448 1.24717 0.99352 0.95719 1.00968 1.69662 1.41208 1.02824 1.43804 0.86362 0.83438 0.77157 0.79735 1.21462 1.21851 1.21442 1.21772 1.00150 0.94694 0.96948 1.21906 1.00050 0.99165 0.99158 1.21714 1.00682 0.97989 0.98997 1.85179 0.89503 1.11300 1.69668 1.76337 1.28536 1.02070 1.30547 0.92186 0.88045 0.92179 0.80401 0.91531 0.91086 0.88784 0.90421 0.87848 0.91250 0.92112 0.77851 0.93537 0.91452 0.93417 0.93141 0.93910 0.91382 0.94722 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.43 101.05 1.05 1.34 16 2 O -0.30 -3.24 10.52 -19.63 -0.21 -3.45 16 3 C 0.31 3.66 7.36 -18.42 -0.14 3.53 16 4 C -0.13 -1.62 10.10 -39.90 -0.40 -2.03 16 5 C -0.17 -2.20 6.40 -36.05 -0.23 -2.43 16 6 C 0.58 8.90 7.64 -12.66 -0.10 8.80 16 7 O -0.49 -9.76 16.60 5.25 0.09 -9.67 16 8 N -0.60 -7.91 2.87 -182.96 -0.53 -8.43 16 9 C 0.06 0.51 8.91 59.85 0.53 1.04 16 10 C 0.12 1.85 5.23 -4.04 -0.02 1.83 16 11 C -0.14 -2.19 4.36 -26.73 -0.12 -2.31 16 12 C 0.19 3.46 2.11 -67.93 -0.14 3.32 16 13 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 14 N -0.72 -17.27 3.81 -53.42 -0.20 -17.48 16 15 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 19 Si 0.90 22.42 29.55 -169.99 -5.02 17.39 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.11 -1.98 2.91 -90.62 -0.26 -2.24 16 24 C -0.14 -1.98 8.85 37.16 0.33 -1.65 16 25 C -0.14 -2.41 8.68 37.16 0.32 -2.09 16 26 S 0.29 2.91 19.24 -107.50 -2.07 0.84 16 27 N -0.53 -6.22 11.03 29.19 0.32 -5.90 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.18 2.15 8.06 -52.48 -0.42 1.73 16 32 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.07 0.55 5.18 -30.62 -0.16 0.39 16 34 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 35 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 36 H 0.10 2.05 7.12 -51.93 -0.37 1.68 16 37 H 0.07 1.25 6.71 -51.93 -0.35 0.90 16 38 H 0.06 0.80 6.18 -51.93 -0.32 0.48 16 39 H 0.39 10.31 7.80 -40.82 -0.32 9.99 16 40 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.63 6.32 -51.93 -0.33 0.30 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 1.43 7.60 -51.93 -0.39 1.03 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.04 0.72 6.54 -51.93 -0.34 0.38 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -32.59 392.84 -7.55 -40.13 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.16 Total: 7.98 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 0.58 Total: 0.12 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.32 Total: -59.26 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.12 Total: -13.12 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.07 Total: 0.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.59 -7.55 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282551271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.327 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds