Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35964 * 116.99695 * 2 1 4 4 C 1.37561 * 120.82586 * 180.29326 * 3 2 1 5 5 C 1.38044 * 114.24908 * 180.21381 * 4 3 2 6 6 C 1.47117 * 127.75760 * 179.80513 * 5 4 3 7 7 O 1.21629 * 120.00256 * 6.69130 * 6 5 4 8 8 N 1.34779 * 119.99978 * 186.70212 * 6 5 4 9 9 C 1.46500 * 119.99994 * 5.75321 * 8 6 5 10 10 C 1.46498 * 120.00311 * 185.76268 * 8 6 5 11 11 C 1.52996 * 109.46927 * 269.99818 * 10 8 6 12 12 C 1.53003 * 109.47195 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47330 * 54.99199 * 12 11 10 14 14 N 1.46502 * 109.46897 * 294.99582 * 12 11 10 15 15 C 1.36935 * 119.99839 * 154.99737 * 14 12 11 16 16 H 1.07997 * 120.00226 * 0.02562 * 15 14 12 17 17 C 1.38816 * 119.99598 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00453 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47435 * 60.00037 * 19 17 15 21 21 H 1.48504 * 109.47367 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47494 * 300.00170 * 19 17 15 23 23 C 1.53004 * 109.47225 * 174.99625 * 12 11 10 24 24 C 1.52996 * 109.46811 * 299.99742 * 23 12 11 25 25 C 1.53001 * 109.46811 * 59.99863 * 23 12 11 26 26 S 1.77228 * 104.48067 * 359.54560 * 5 4 3 27 27 N 1.30372 * 120.82557 * 359.97297 * 3 2 1 28 28 H 1.09003 * 109.46836 * 60.00357 * 1 2 3 29 29 H 1.09002 * 109.46622 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46868 * 299.99722 * 1 2 3 31 31 H 1.08007 * 122.87910 * 0.04148 * 4 3 2 32 32 H 1.09001 * 109.47307 * 275.51009 * 9 8 6 33 33 H 1.09007 * 109.47219 * 35.50870 * 9 8 6 34 34 H 1.09002 * 109.47458 * 155.50778 * 9 8 6 35 35 H 1.08997 * 109.47613 * 149.99452 * 10 8 6 36 36 H 1.09006 * 109.46890 * 29.99595 * 10 8 6 37 37 H 1.08996 * 109.47692 * 59.99762 * 11 10 8 38 38 H 1.09007 * 109.46848 * 299.99163 * 11 10 8 39 39 H 0.97004 * 119.99963 * 335.00202 * 14 12 11 40 40 H 0.96995 * 120.00473 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.46829 * 179.97438 * 23 12 11 42 42 H 1.08996 * 109.47643 * 299.99878 * 24 23 12 43 43 H 1.08994 * 109.47574 * 60.00272 * 24 23 12 44 44 H 1.09004 * 109.46574 * 179.97438 * 24 23 12 45 45 H 1.08999 * 109.47273 * 60.00124 * 25 23 12 46 46 H 1.08999 * 109.46692 * 179.97438 * 25 23 12 47 47 H 1.08994 * 109.47176 * 299.99484 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4188 1.3033 -0.0060 5 6 3.9005 2.5970 -0.0005 6 6 5.3048 3.0354 -0.0007 7 8 6.1969 2.2186 -0.1288 8 7 5.6029 4.3421 0.1414 9 6 4.5393 5.3097 0.4218 10 6 6.9904 4.7949 0.0152 11 6 7.6667 4.7545 1.3870 12 6 9.1161 5.2268 1.2552 13 1 9.1362 6.2121 0.7894 14 7 9.8649 4.2793 0.4259 15 6 10.9779 4.6958 -0.2544 16 1 11.3040 5.7226 -0.1793 17 6 11.6877 3.7978 -1.0398 18 7 11.2907 2.5463 -1.1310 19 14 13.2065 4.3657 -1.9672 20 1 14.2148 4.8734 -1.0023 21 1 13.7782 3.2249 -2.7268 22 1 12.8338 5.4506 -2.9103 23 6 9.7551 5.3056 2.6431 24 6 8.9730 6.2952 3.5091 25 6 9.7268 3.9225 3.2968 26 16 2.4470 3.6111 -0.0010 27 7 1.3520 2.3150 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0644 0.4375 -0.0117 32 1 4.0719 5.6173 -0.5136 33 1 3.7911 4.8503 1.0679 34 1 4.9633 6.1816 0.9200 35 1 7.0063 5.8152 -0.3678 36 1 7.5251 4.1401 -0.6730 37 1 7.6509 3.7342 1.7701 38 1 7.1320 5.4094 2.0751 39 1 9.5722 3.3569 0.3586 40 1 11.7869 1.9187 -1.6794 41 1 10.7877 5.6416 2.5491 42 1 8.9931 7.2805 3.0435 43 1 7.9405 5.9588 3.6031 44 1 9.4280 6.3509 4.4981 45 1 10.2839 3.2176 2.6798 46 1 10.1824 3.9786 4.2854 47 1 8.6943 3.5862 3.3908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282551271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = -34.133326 kcal Electronic energy + Delta-G solvation = -27832.919800 eV Core-core repulsion = 23949.971275 eV Total energy + Delta-G solvation = -3882.948525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.38834 -40.86876 -38.95923 -37.53989 -36.75672 -35.00965 -33.16091 -32.29049 -31.18617 -29.04349 -28.07101 -27.84190 -27.20149 -25.67569 -24.51970 -23.51040 -22.15421 -20.37891 -19.80413 -19.51907 -19.15258 -18.73455 -17.37211 -17.33809 -17.24163 -16.85723 -16.52950 -15.81626 -15.68999 -15.54746 -15.40438 -14.86696 -14.65323 -14.50161 -14.39319 -14.34458 -14.16984 -13.59010 -13.44811 -13.02660 -12.93679 -12.90614 -12.80362 -12.75663 -12.55058 -12.46809 -12.14427 -12.11974 -12.06703 -11.78527 -11.73891 -11.60673 -11.33515 -11.29951 -11.00975 -10.88118 -10.79738 -9.81311 -9.36930 -8.86408 -7.84050 -5.11118 -1.03141 0.01412 0.47513 1.07308 1.47791 1.50497 1.56395 1.60727 1.88538 2.24847 2.61536 3.25945 3.47982 3.70013 3.97307 4.01495 4.09916 4.12771 4.16085 4.28068 4.31311 4.35934 4.44721 4.51154 4.53996 4.60742 4.63252 4.70981 4.74797 4.79817 4.89609 4.95411 4.99829 5.02554 5.15917 5.22166 5.31952 5.36816 5.46261 5.51932 5.57378 5.68624 5.75578 5.97079 6.17698 6.36643 6.90513 7.42369 8.23235 8.44151 9.38994 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.002712 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.291883 B =10323.017100 C =11281.585899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.310 6.310 3 C 0.303 3.697 4 C -0.140 4.140 5 C -0.194 4.194 6 C 0.577 3.423 7 O -0.555 6.555 8 N -0.596 5.596 9 C 0.048 3.952 10 C 0.126 3.874 11 C -0.124 4.124 12 C 0.179 3.821 13 H 0.053 0.947 14 N -0.729 5.729 15 C -0.226 4.226 16 H 0.077 0.923 17 C -0.080 4.080 18 N -0.971 5.971 19 Si 0.965 3.035 20 H -0.280 1.280 21 H -0.303 1.303 22 H -0.277 1.277 23 C -0.111 4.111 24 C -0.135 4.135 25 C -0.130 4.130 26 S 0.370 5.630 27 N -0.547 5.547 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.062 0.938 31 H 0.169 0.831 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.102 0.898 39 H 0.369 0.631 40 H 0.245 0.755 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.022 0.978 46 H 0.052 0.948 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.679 6.730 6.889 26.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.216 6.216 3 C 0.090 3.910 4 C -0.178 4.178 5 C -0.326 4.326 6 C 0.363 3.637 7 O -0.433 6.433 8 N -0.328 5.328 9 C -0.095 4.095 10 C 0.005 3.995 11 C -0.163 4.163 12 C 0.070 3.930 13 H 0.071 0.929 14 N -0.368 5.368 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.272 4.272 18 N -0.622 5.622 19 Si 0.795 3.205 20 H -0.207 1.207 21 H -0.230 1.230 22 H -0.203 1.203 23 C -0.132 4.132 24 C -0.193 4.193 25 C -0.188 4.188 26 S 0.522 5.478 27 N -0.388 5.388 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.081 0.919 31 H 0.187 0.813 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.142 0.858 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.201 0.799 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.071 0.929 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.500 7.761 6.731 27.492 hybrid contribution 2.041 -2.254 -0.794 3.143 sum -23.459 5.506 5.937 24.817 Atomic orbital electron populations 1.23220 0.75021 1.05420 1.02557 1.86309 1.24728 1.22545 1.88030 1.19744 0.89395 0.85702 0.96133 1.20839 0.92981 0.98835 1.05147 1.25864 0.99222 0.98713 1.08782 1.17140 0.85769 0.83238 0.77560 1.90945 1.48427 1.53515 1.50442 1.47810 1.09877 1.05996 1.69110 1.22460 0.89710 0.93971 1.03379 1.21505 0.78981 1.00885 0.98170 1.22131 0.95598 1.01514 0.97007 1.20455 0.89624 0.92869 0.90002 0.92885 1.42665 1.30136 1.09582 1.54456 1.19564 1.02351 0.94873 1.19015 0.90495 1.25485 1.02691 0.95936 1.03092 1.69857 1.42753 1.04114 1.45489 0.85332 0.80211 0.76399 0.78556 1.20690 1.23016 1.20307 1.21661 0.99296 0.95468 0.96779 1.21807 1.00230 0.98404 0.98814 1.21641 1.00748 0.97330 0.99047 1.84795 0.86376 1.09026 1.67611 1.76237 1.29455 1.02668 1.30454 0.92136 0.85403 0.91933 0.81326 0.89486 0.90065 0.85781 0.87586 0.93135 0.93928 0.88017 0.79931 0.94588 0.94046 0.91938 0.91372 0.92708 0.95847 0.92889 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.43 113.37 1.18 1.62 16 2 O -0.31 -6.64 10.52 -93.14 -0.98 -7.62 16 3 C 0.30 7.05 7.36 84.75 0.62 7.67 16 4 C -0.14 -3.56 10.10 22.06 0.22 -3.34 16 5 C -0.19 -4.84 6.40 24.56 0.16 -4.68 16 6 C 0.58 18.09 7.64 86.57 0.66 18.75 16 7 O -0.55 -23.80 16.60 -4.12 -0.07 -23.87 16 8 N -0.60 -14.86 2.87 -851.02 -2.45 -17.31 16 9 C 0.05 0.63 8.91 127.77 1.14 1.77 16 10 C 0.13 3.81 5.23 86.38 0.45 4.26 16 11 C -0.12 -3.74 4.36 30.59 0.13 -3.61 16 12 C 0.18 6.56 2.11 44.99 0.09 6.66 16 13 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 14 N -0.73 -36.25 3.81 -322.92 -1.23 -37.48 16 15 C -0.23 -12.42 9.93 84.03 0.83 -11.59 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 18 N -0.97 -62.11 13.06 21.65 0.28 -61.83 16 19 Si 0.96 47.30 29.55 68.60 2.03 49.33 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 21 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 C -0.11 -3.71 2.91 -10.79 -0.03 -3.74 16 24 C -0.13 -3.15 8.85 71.98 0.64 -2.51 16 25 C -0.13 -4.60 8.68 71.98 0.63 -3.97 16 26 S 0.37 6.38 19.24 -56.49 -1.09 5.29 16 27 N -0.55 -11.73 11.03 -175.20 -1.93 -13.67 16 28 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.09 0.86 7.66 -2.39 -0.02 0.84 16 33 H 0.08 0.93 5.18 -15.93 -0.08 0.85 16 34 H 0.12 0.97 8.03 -2.39 -0.02 0.96 16 35 H 0.11 2.57 8.07 -2.39 -0.02 2.55 16 36 H 0.05 2.11 7.12 -2.38 -0.02 2.09 16 37 H 0.04 1.54 6.71 -2.39 -0.02 1.53 16 38 H 0.10 2.25 6.18 -2.38 -0.01 2.23 16 39 H 0.37 20.97 7.80 -92.71 -0.72 20.24 16 40 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.36 6.32 -2.39 -0.02 1.35 16 44 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.02 1.00 7.60 -2.39 -0.02 0.99 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.05 1.76 6.54 -2.39 -0.02 1.74 16 Total: -1.00 -76.82 392.84 1.96 -74.86 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.19 Total: 29.22 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 7.20 Total: 3.06 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -5.32 Total: -130.28 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -1.05 Total: -31.48 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -1.09 Total: 5.29 kcal Total: -76.82 1.96 -74.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282551271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.729 kcal (2) G-P(sol) polarization free energy of solvation -76.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds