Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47234 * 2 1 4 4 C 1.50703 * 109.47231 * 240.00064 * 2 1 3 5 5 S 1.70941 * 125.58604 * 53.05754 * 4 2 1 6 6 C 1.70770 * 91.12806 * 179.97438 * 5 4 2 7 7 N 1.28642 * 110.56004 * 0.33972 * 6 5 4 8 8 C 1.33554 * 115.76837 * 359.74110 * 7 6 5 9 9 C 1.47264 * 123.14434 * 180.02562 * 8 7 6 10 10 O 1.21640 * 120.00052 * 185.11076 * 9 8 7 11 11 N 1.34781 * 120.00117 * 5.10939 * 9 8 7 12 12 C 1.46496 * 119.99877 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46790 * 179.97438 * 12 11 9 14 14 O 1.42900 * 109.46940 * 65.00183 * 13 12 11 15 15 C 1.42905 * 113.99895 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46974 * 179.97438 * 15 14 13 17 17 N 1.46507 * 109.47134 * 65.00548 * 16 15 14 18 18 C 1.46500 * 119.99776 * 269.99863 * 17 16 15 19 19 C 1.36934 * 120.00255 * 89.99673 * 17 16 15 20 20 H 1.08002 * 120.00228 * 24.59149 * 19 17 16 21 21 C 1.38813 * 119.99992 * 204.59814 * 19 17 16 22 22 N 1.31622 * 119.99830 * 14.15328 * 21 19 17 23 23 Si 1.86803 * 119.99991 * 194.15246 * 21 19 17 24 24 H 1.48499 * 109.46917 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47140 * 119.99756 * 23 21 19 26 26 H 1.48499 * 109.46972 * 239.99997 * 23 21 19 27 27 H 1.09004 * 109.46792 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47109 * 60.00496 * 1 2 3 29 29 H 1.08994 * 109.47253 * 299.99840 * 1 2 3 30 30 H 1.08996 * 109.47355 * 120.00103 * 2 1 3 31 31 H 1.09003 * 109.47428 * 300.00300 * 3 2 1 32 32 H 1.09004 * 109.47216 * 59.99492 * 3 2 1 33 33 H 1.08993 * 109.47770 * 180.02562 * 3 2 1 34 34 H 1.07998 * 124.71777 * 180.08385 * 6 5 4 35 35 H 0.97001 * 119.99761 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47604 * 299.99703 * 12 11 9 37 37 H 1.08998 * 109.47307 * 60.00256 * 12 11 9 38 38 H 1.09002 * 109.47253 * 184.99564 * 13 12 11 39 39 H 1.09001 * 109.47471 * 304.99969 * 13 12 11 40 40 H 1.08999 * 109.47331 * 300.00057 * 15 14 13 41 41 H 1.09005 * 109.46842 * 60.00205 * 15 14 13 42 42 H 1.09005 * 109.47253 * 185.00018 * 16 15 14 43 43 H 1.09000 * 109.47702 * 305.00193 * 16 15 14 44 44 H 1.08998 * 109.47164 * 91.58999 * 18 17 16 45 45 H 1.08999 * 109.47353 * 211.59266 * 18 17 16 46 46 H 1.09006 * 109.47218 * 331.59820 * 18 17 16 47 47 H 0.97001 * 119.99524 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 16 1.5762 -0.3563 -2.8394 6 6 2.5936 -1.5916 -3.4354 7 7 3.1930 -2.1897 -2.4670 8 6 2.9125 -1.7367 -1.2423 9 6 3.5067 -2.3018 -0.0191 10 8 3.1414 -1.9082 1.0724 11 7 4.4553 -3.2550 -0.1089 12 6 5.0460 -3.8175 1.1080 13 6 6.0877 -4.8720 0.7287 14 8 7.1702 -4.2453 0.0378 15 6 8.2039 -5.1471 -0.3628 16 6 9.3041 -4.3712 -1.0897 17 7 9.9428 -3.4396 -0.1567 18 6 9.4208 -2.0788 -0.0081 19 6 11.0274 -3.8407 0.5766 20 1 11.6530 -4.6454 0.2194 21 6 11.3229 -3.2131 1.7789 22 7 10.4283 -2.4374 2.3537 23 14 12.9902 -3.4696 2.5813 24 1 13.8091 -4.3799 1.7411 25 1 13.6818 -2.1623 2.7146 26 1 12.8050 -4.0710 3.9264 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 2.7138 -1.8391 -4.4797 35 1 4.7469 -3.5686 -0.9793 36 1 5.5247 -3.0229 1.6804 37 1 4.2646 -4.2797 1.7111 38 1 6.4632 -5.3531 1.6319 39 1 5.6288 -5.6202 0.0825 40 1 8.6231 -5.6336 0.5179 41 1 7.7891 -5.9012 -1.0316 42 1 10.0486 -5.0692 -1.4727 43 1 8.8685 -3.8136 -1.9188 44 1 8.6864 -2.0572 0.7971 45 1 10.2396 -1.3994 0.2287 46 1 8.9479 -1.7672 -0.9395 47 1 10.6350 -1.9986 3.1937 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283424083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = -21.409201 kcal Electronic energy + Delta-G solvation = -27664.132898 eV Core-core repulsion = 23781.736132 eV Total energy + Delta-G solvation = -3882.396766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71713 -38.69435 -37.53458 -36.07247 -35.31906 -34.28761 -31.44481 -30.33966 -29.34096 -27.83088 -27.40101 -25.85572 -25.62920 -23.27309 -22.93651 -21.85530 -21.52901 -20.30722 -19.87371 -18.20803 -16.93187 -16.77115 -16.17108 -16.06355 -15.68788 -15.42689 -15.01707 -14.60098 -14.40115 -14.24439 -14.07418 -13.89971 -13.59355 -13.32016 -13.29045 -13.07850 -12.53291 -12.45723 -12.28193 -12.09920 -11.73179 -11.55125 -11.47376 -11.38963 -11.23199 -10.88039 -10.82031 -10.72783 -10.46962 -10.05082 -10.03667 -9.85773 -9.78549 -9.68645 -9.63619 -9.23992 -8.95004 -8.87745 -8.45035 -6.60843 -5.63401 -3.09880 0.32944 0.99388 1.40872 1.86127 3.25805 3.36725 3.41350 3.48561 3.50525 3.94900 4.22526 4.42237 4.57129 4.64188 4.82554 4.90754 5.12120 5.22395 5.30200 5.36168 5.36322 5.48524 5.56170 5.61076 5.63789 5.68202 5.72108 5.78479 5.84009 6.01848 6.04502 6.12443 6.20406 6.26029 6.29053 6.56861 6.60905 6.82497 6.99648 7.15339 7.50795 7.64074 7.84597 7.87803 7.98145 8.24312 8.50133 9.33252 9.97429 10.49524 11.41072 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002410 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.540507 B =11617.441800 C =11972.112422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C -0.142 4.142 4 C -0.167 4.167 5 S 0.194 5.806 6 C -0.007 4.007 7 N -0.435 5.435 8 C -0.003 4.003 9 C 0.594 3.406 10 O -0.536 6.536 11 N -0.698 5.698 12 C 0.124 3.876 13 C 0.051 3.949 14 O -0.366 6.366 15 C 0.044 3.956 16 C 0.152 3.848 17 N -0.594 5.594 18 C 0.173 3.827 19 C -0.258 4.258 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.898 5.898 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.137 0.863 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.204 0.796 35 H 0.412 0.588 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.031 0.969 45 H 0.036 0.964 46 H -0.006 1.006 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.501 2.483 -10.802 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.291 4.291 5 S 0.450 5.550 6 C -0.306 4.306 7 N -0.149 5.149 8 C -0.137 4.137 9 C 0.378 3.622 10 O -0.415 6.415 11 N -0.349 5.349 12 C 0.000 4.000 13 C -0.027 4.027 14 O -0.285 6.285 15 C -0.036 4.036 16 C 0.024 3.976 17 N -0.317 5.317 18 C 0.028 3.972 19 C -0.388 4.388 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.543 5.543 23 Si 0.730 3.270 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.219 1.219 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.221 0.779 35 H 0.248 0.752 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.012 0.988 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.949 3.277 -10.531 25.462 hybrid contribution 1.493 -1.097 0.822 2.027 sum -21.456 2.181 -9.709 23.651 Atomic orbital electron populations 1.21906 0.93885 1.02169 1.02129 1.20316 0.95764 0.96117 0.95068 1.21872 1.01878 0.94225 1.02013 1.25682 1.01448 1.00605 1.01350 1.82777 1.41727 1.34094 0.96386 1.28309 1.00047 0.98650 1.03623 1.66941 1.22523 1.27367 0.98069 1.20344 1.02169 0.98846 0.92386 1.17002 0.79411 0.79249 0.86527 1.90657 1.62525 1.60898 1.27373 1.45746 1.38796 1.39302 1.11030 1.21472 0.94458 0.97299 0.86741 1.22595 0.88592 0.94391 0.97115 1.88021 1.30449 1.34523 1.75460 1.23494 0.89178 0.92444 0.98471 1.20903 0.91634 0.92836 0.92222 1.43870 1.32963 1.08304 1.46553 1.20659 0.97136 0.84580 0.94778 1.19211 1.01545 1.18165 0.99849 0.91656 1.25053 0.97863 1.00564 0.96095 1.70113 1.32177 1.34310 1.17685 0.86265 0.84257 0.77408 0.79078 1.20394 1.21675 1.21859 0.92370 0.92855 0.91446 0.84620 0.92898 0.91469 0.92096 0.77946 0.75163 0.89814 0.90331 0.91944 0.93796 0.93295 0.95766 0.92394 0.93860 0.95108 0.94517 0.98794 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.03 37.15 0.34 -0.84 16 2 C -0.05 -0.56 3.11 -91.77 -0.29 -0.85 16 3 C -0.14 -1.35 9.17 37.16 0.34 -1.01 16 4 C -0.17 -1.90 5.04 -35.39 -0.18 -2.07 16 5 S 0.19 1.53 22.39 -107.50 -2.41 -0.88 16 6 C -0.01 -0.06 12.17 51.43 0.63 0.57 16 7 N -0.44 -5.40 10.13 -12.37 -0.13 -5.53 16 8 C 0.00 -0.04 6.70 -84.53 -0.57 -0.61 16 9 C 0.59 9.32 7.79 -12.59 -0.10 9.22 16 10 O -0.54 -9.30 13.86 5.24 0.07 -9.22 16 11 N -0.70 -10.52 5.50 -61.43 -0.34 -10.86 16 12 C 0.12 1.88 6.06 -4.04 -0.02 1.85 16 13 C 0.05 0.78 6.07 37.16 0.23 1.01 16 14 O -0.37 -7.19 9.85 -35.23 -0.35 -7.54 16 15 C 0.04 0.84 6.28 37.16 0.23 1.07 16 16 C 0.15 3.22 6.12 -4.04 -0.02 3.19 16 17 N -0.59 -15.53 2.88 -181.11 -0.52 -16.05 16 18 C 0.17 4.57 8.63 59.85 0.52 5.09 16 19 C -0.26 -7.24 9.63 -15.06 -0.15 -7.38 16 20 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 21 C 0.00 0.09 5.04 -17.43 -0.09 0.00 16 22 N -0.90 -27.00 10.90 55.49 0.60 -26.40 16 23 Si 0.90 22.23 29.58 -169.99 -5.03 17.20 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.37 7.80 -51.93 -0.40 -0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.14 1.82 4.96 -51.93 -0.26 1.57 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.41 6.00 8.00 -40.82 -0.33 5.67 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 43 H 0.04 0.86 7.88 -51.93 -0.41 0.45 16 44 H 0.03 0.89 7.51 -51.93 -0.39 0.50 16 45 H 0.04 1.03 7.24 -51.93 -0.38 0.65 16 46 H -0.01 -0.16 7.87 -51.93 -0.41 -0.57 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 400.35 15.07 6.03 6.03 Total: -1.00 -33.72 400.35 -8.80 -42.52 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.61 Total: 1.47 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 0.87 Total: 9.24 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.38 Total: -58.83 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.27 Total: -16.76 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.41 Total: -0.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.72 -8.80 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283424083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.111 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds