Wall clock time and date at job start Sat Apr 11 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47234 * 2 1 4 4 C 1.50703 * 109.47231 * 240.00064 * 2 1 3 5 5 S 1.70941 * 125.58604 * 53.05754 * 4 2 1 6 6 C 1.70770 * 91.12806 * 179.97438 * 5 4 2 7 7 N 1.28642 * 110.56004 * 0.33972 * 6 5 4 8 8 C 1.33554 * 115.76837 * 359.74110 * 7 6 5 9 9 C 1.47264 * 123.14434 * 180.02562 * 8 7 6 10 10 O 1.21640 * 120.00052 * 185.11076 * 9 8 7 11 11 N 1.34781 * 120.00117 * 5.10939 * 9 8 7 12 12 C 1.46496 * 119.99877 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46790 * 179.97438 * 12 11 9 14 14 O 1.42900 * 109.46940 * 65.00183 * 13 12 11 15 15 C 1.42905 * 113.99895 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46974 * 179.97438 * 15 14 13 17 17 N 1.46507 * 109.47134 * 65.00548 * 16 15 14 18 18 C 1.46500 * 119.99776 * 269.99863 * 17 16 15 19 19 C 1.36934 * 120.00255 * 89.99673 * 17 16 15 20 20 H 1.08002 * 120.00228 * 24.59149 * 19 17 16 21 21 C 1.38813 * 119.99992 * 204.59814 * 19 17 16 22 22 N 1.31622 * 119.99830 * 14.15328 * 21 19 17 23 23 Si 1.86803 * 119.99991 * 194.15246 * 21 19 17 24 24 H 1.48499 * 109.46917 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47140 * 119.99756 * 23 21 19 26 26 H 1.48499 * 109.46972 * 239.99997 * 23 21 19 27 27 H 1.09004 * 109.46792 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47109 * 60.00496 * 1 2 3 29 29 H 1.08994 * 109.47253 * 299.99840 * 1 2 3 30 30 H 1.08996 * 109.47355 * 120.00103 * 2 1 3 31 31 H 1.09003 * 109.47428 * 300.00300 * 3 2 1 32 32 H 1.09004 * 109.47216 * 59.99492 * 3 2 1 33 33 H 1.08993 * 109.47770 * 180.02562 * 3 2 1 34 34 H 1.07998 * 124.71777 * 180.08385 * 6 5 4 35 35 H 0.97001 * 119.99761 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47604 * 299.99703 * 12 11 9 37 37 H 1.08998 * 109.47307 * 60.00256 * 12 11 9 38 38 H 1.09002 * 109.47253 * 184.99564 * 13 12 11 39 39 H 1.09001 * 109.47471 * 304.99969 * 13 12 11 40 40 H 1.08999 * 109.47331 * 300.00057 * 15 14 13 41 41 H 1.09005 * 109.46842 * 60.00205 * 15 14 13 42 42 H 1.09005 * 109.47253 * 185.00018 * 16 15 14 43 43 H 1.09000 * 109.47702 * 305.00193 * 16 15 14 44 44 H 1.08998 * 109.47164 * 91.58999 * 18 17 16 45 45 H 1.08999 * 109.47353 * 211.59266 * 18 17 16 46 46 H 1.09006 * 109.47218 * 331.59820 * 18 17 16 47 47 H 0.97001 * 119.99524 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 16 1.5762 -0.3563 -2.8394 6 6 2.5936 -1.5916 -3.4354 7 7 3.1930 -2.1897 -2.4670 8 6 2.9125 -1.7367 -1.2423 9 6 3.5067 -2.3018 -0.0191 10 8 3.1414 -1.9082 1.0724 11 7 4.4553 -3.2550 -0.1089 12 6 5.0460 -3.8175 1.1080 13 6 6.0877 -4.8720 0.7287 14 8 7.1702 -4.2453 0.0378 15 6 8.2039 -5.1471 -0.3628 16 6 9.3041 -4.3712 -1.0897 17 7 9.9428 -3.4396 -0.1567 18 6 9.4208 -2.0788 -0.0081 19 6 11.0274 -3.8407 0.5766 20 1 11.6530 -4.6454 0.2194 21 6 11.3229 -3.2131 1.7789 22 7 10.4283 -2.4374 2.3537 23 14 12.9902 -3.4696 2.5813 24 1 13.8091 -4.3799 1.7411 25 1 13.6818 -2.1623 2.7146 26 1 12.8050 -4.0710 3.9264 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 2.7138 -1.8391 -4.4797 35 1 4.7469 -3.5686 -0.9793 36 1 5.5247 -3.0229 1.6804 37 1 4.2646 -4.2797 1.7111 38 1 6.4632 -5.3531 1.6319 39 1 5.6288 -5.6202 0.0825 40 1 8.6231 -5.6336 0.5179 41 1 7.7891 -5.9012 -1.0316 42 1 10.0486 -5.0692 -1.4727 43 1 8.8685 -3.8136 -1.9188 44 1 8.6864 -2.0572 0.7971 45 1 10.2396 -1.3994 0.2287 46 1 8.9479 -1.7672 -0.9395 47 1 10.6350 -1.9986 3.1937 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283424083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:54 Heat of formation + Delta-G solvation = -44.693703 kcal Electronic energy + Delta-G solvation = -27665.142589 eV Core-core repulsion = 23781.736132 eV Total energy + Delta-G solvation = -3883.406458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.68315 -39.78400 -38.98684 -37.28200 -36.79548 -35.61563 -33.42645 -31.47480 -30.56553 -29.42505 -28.10594 -27.82196 -26.70253 -24.87455 -24.24985 -22.93825 -22.40388 -22.15726 -20.95476 -19.04041 -18.77679 -17.91355 -17.56952 -17.36413 -16.85788 -16.59871 -16.52929 -16.06983 -15.52875 -15.36510 -15.22169 -15.20388 -14.98614 -14.75640 -14.61150 -14.07252 -14.00245 -13.78958 -13.21274 -13.13235 -13.10546 -13.00018 -12.75743 -12.55730 -12.51548 -12.45247 -12.36124 -12.23604 -12.18577 -12.02236 -11.77924 -11.70256 -10.82139 -10.72115 -10.62661 -10.41022 -10.39550 -10.28350 -9.85700 -8.72482 -7.79829 -5.28825 -0.47633 0.27463 0.65205 0.93864 1.45396 1.46754 1.57354 2.15146 2.30139 2.51997 2.84778 3.14344 3.33381 3.59641 3.74846 3.83605 3.92242 4.10183 4.13986 4.15848 4.33519 4.42006 4.49866 4.55853 4.56978 4.59973 4.66892 4.69891 4.81005 4.86479 4.88396 4.90770 4.94690 4.98664 5.12784 5.18605 5.24358 5.28855 5.30860 5.50745 5.66092 5.76300 6.25778 6.35171 6.45129 6.58982 7.08789 7.17128 7.90090 8.37897 9.23940 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002410 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.540507 B =11617.441800 C =11972.112422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.057 4.057 3 C -0.139 4.139 4 C -0.186 4.186 5 S 0.279 5.721 6 C -0.008 4.008 7 N -0.466 5.466 8 C -0.033 4.033 9 C 0.585 3.415 10 O -0.565 6.565 11 N -0.697 5.697 12 C 0.130 3.870 13 C 0.054 3.946 14 O -0.394 6.394 15 C 0.052 3.948 16 C 0.145 3.855 17 N -0.611 5.611 18 C 0.194 3.806 19 C -0.262 4.262 20 H 0.074 0.926 21 C -0.055 4.055 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.263 1.263 25 H -0.294 1.294 26 H -0.294 1.294 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.240 0.760 35 H 0.415 0.585 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.023 0.977 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.057 0.943 44 H -0.003 1.003 45 H 0.010 0.990 46 H 0.016 0.984 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.647 2.019 -13.445 27.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.310 4.310 5 S 0.536 5.464 6 C -0.307 4.307 7 N -0.181 5.181 8 C -0.167 4.167 9 C 0.371 3.629 10 O -0.445 6.445 11 N -0.347 5.347 12 C 0.006 3.994 13 C -0.023 4.023 14 O -0.314 6.314 15 C -0.027 4.027 16 C 0.019 3.981 17 N -0.334 5.334 18 C 0.049 3.951 19 C -0.393 4.393 20 H 0.092 0.908 21 C -0.251 4.251 22 N -0.581 5.581 23 Si 0.795 3.205 24 H -0.187 1.187 25 H -0.221 1.221 26 H -0.221 1.221 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.256 0.744 35 H 0.252 0.748 36 H 0.066 0.934 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.016 0.984 45 H 0.028 0.972 46 H 0.035 0.965 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.102 2.777 -13.224 27.631 hybrid contribution 1.740 -0.921 1.509 2.481 sum -22.362 1.856 -11.715 25.313 Atomic orbital electron populations 1.21875 0.91811 1.02238 1.03576 1.20267 0.97438 0.96202 0.93817 1.21856 1.00378 0.93865 1.03551 1.25963 1.00992 1.00119 1.03973 1.82421 1.39524 1.32024 0.92455 1.28993 0.98979 0.98168 1.04604 1.66921 1.24206 1.28867 0.98077 1.20140 1.03884 1.00463 0.92218 1.17484 0.79203 0.78956 0.87297 1.90645 1.63459 1.61708 1.28727 1.45732 1.38702 1.39404 1.10881 1.21356 0.94791 0.96276 0.86933 1.22699 0.87508 0.94704 0.97380 1.87979 1.31428 1.35922 1.76061 1.23254 0.88908 0.92583 0.97931 1.21144 0.92603 0.92721 0.91668 1.44088 1.33329 1.08977 1.47005 1.20289 0.95241 0.84985 0.94578 1.19588 1.02206 1.17710 0.99757 0.90817 1.25857 1.01273 1.00908 0.97019 1.70298 1.34054 1.35783 1.17966 0.85207 0.80169 0.77158 0.77922 1.18675 1.22081 1.22129 0.92972 0.90911 0.90485 0.87995 0.90835 0.90454 0.94401 0.74363 0.74809 0.93434 0.88542 0.92223 0.90477 0.95842 0.91405 0.90724 0.92420 0.98422 0.97158 0.96512 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.03 71.98 0.65 -1.44 16 2 C -0.06 -1.22 3.11 -11.54 -0.04 -1.25 16 3 C -0.14 -2.58 9.17 71.98 0.66 -1.92 16 4 C -0.19 -4.11 5.04 24.99 0.13 -3.99 16 5 S 0.28 3.60 22.39 -56.49 -1.26 2.34 16 6 C -0.01 -0.13 12.17 130.71 1.59 1.47 16 7 N -0.47 -11.13 10.13 -193.04 -1.96 -13.09 16 8 C -0.03 -0.91 6.70 40.56 0.27 -0.64 16 9 C 0.59 19.30 7.79 86.62 0.67 19.98 16 10 O -0.56 -21.05 13.86 -4.16 -0.06 -21.11 16 11 N -0.70 -21.72 5.50 -466.51 -2.57 -24.28 16 12 C 0.13 4.12 6.06 86.38 0.52 4.64 16 13 C 0.05 1.66 6.07 71.98 0.44 2.10 16 14 O -0.39 -15.48 9.85 -148.98 -1.47 -16.94 16 15 C 0.05 1.93 6.28 71.98 0.45 2.39 16 16 C 0.14 5.92 6.12 86.38 0.53 6.44 16 17 N -0.61 -31.96 2.88 -726.91 -2.09 -34.05 16 18 C 0.19 10.53 8.63 127.77 1.10 11.63 16 19 C -0.26 -14.72 9.63 84.03 0.81 -13.91 16 20 H 0.07 3.94 7.86 -2.91 -0.02 3.92 16 21 C -0.06 -3.20 5.04 84.86 0.43 -2.78 16 22 N -0.93 -58.03 10.90 21.65 0.24 -57.79 16 23 Si 0.97 46.26 29.58 68.60 2.03 48.29 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.80 7.80 -2.38 -0.02 0.79 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 2.94 4.96 -2.39 -0.01 2.93 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.24 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.42 12.20 8.00 -92.71 -0.74 11.46 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.07 2.78 8.04 -2.38 -0.02 2.76 16 43 H 0.06 2.18 7.88 -2.39 -0.02 2.17 16 44 H 0.00 -0.15 7.51 -2.39 -0.02 -0.17 16 45 H 0.01 0.57 7.24 -2.39 -0.02 0.55 16 46 H 0.02 0.80 7.87 -2.38 -0.02 0.78 16 47 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -76.39 400.35 1.31 -75.08 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.23 Total: 18.84 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 8.22 Total: 22.72 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -6.38 Total: -129.22 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.52 Total: -38.05 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.26 Total: 2.34 kcal Total: -76.39 1.31 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283424083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.387 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds