Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47157 * 2 1 4 4 C 1.50703 * 109.46909 * 240.00159 * 2 1 3 5 5 S 1.70947 * 125.58587 * 55.41968 * 4 2 1 6 6 C 1.70774 * 91.12735 * 179.97438 * 5 4 2 7 7 N 1.28644 * 110.56208 * 0.02562 * 6 5 4 8 8 C 1.33565 * 115.76514 * 359.73561 * 7 6 5 9 9 C 1.47266 * 123.14410 * 180.30270 * 8 7 6 10 10 O 1.21630 * 119.99983 * 104.27238 * 9 8 7 11 11 N 1.34774 * 119.99733 * 284.27634 * 9 8 7 12 12 C 1.46497 * 120.00167 * 5.02244 * 11 9 8 13 13 C 1.46507 * 120.00045 * 185.02111 * 11 9 8 14 14 C 1.52993 * 109.47010 * 89.99959 * 13 11 9 15 15 H 1.09002 * 109.47495 * 59.99696 * 14 13 11 16 16 O 1.42906 * 109.47161 * 300.00111 * 14 13 11 17 17 C 1.53001 * 109.47208 * 180.02562 * 14 13 11 18 18 N 1.46501 * 109.47076 * 184.99974 * 17 14 13 19 19 C 1.46504 * 120.00063 * 90.00024 * 18 17 14 20 20 C 1.36933 * 120.00186 * 269.99579 * 18 17 14 21 21 H 1.08001 * 119.99973 * 22.23629 * 20 18 17 22 22 C 1.38816 * 120.00324 * 202.23498 * 20 18 17 23 23 N 1.31622 * 119.99406 * 10.59092 * 22 20 18 24 24 Si 1.86797 * 120.00037 * 190.58859 * 22 20 18 25 25 H 1.48497 * 109.47263 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47064 * 120.00150 * 24 22 20 27 27 H 1.48505 * 109.47154 * 240.00011 * 24 22 20 28 28 H 1.09002 * 109.47164 * 299.99735 * 1 2 3 29 29 H 1.09003 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47729 * 59.99719 * 1 2 3 31 31 H 1.08995 * 109.47432 * 120.00336 * 2 1 3 32 32 H 1.09002 * 109.46867 * 60.00083 * 3 2 1 33 33 H 1.09004 * 109.47445 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47437 * 300.00054 * 3 2 1 35 35 H 1.07998 * 124.71533 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47608 * 84.85083 * 12 11 9 37 37 H 1.09003 * 109.47440 * 204.85201 * 12 11 9 38 38 H 1.09003 * 109.47396 * 324.85081 * 12 11 9 39 39 H 1.08994 * 109.47034 * 210.00345 * 13 11 9 40 40 H 1.09002 * 109.46813 * 329.99825 * 13 11 9 41 41 H 0.96697 * 114.00075 * 300.00236 * 16 14 13 42 42 H 1.09001 * 109.46948 * 304.99749 * 17 14 13 43 43 H 1.08995 * 109.47366 * 64.99674 * 17 14 13 44 44 H 1.08995 * 109.47354 * 93.53606 * 19 18 17 45 45 H 1.09003 * 109.46919 * 213.54368 * 19 18 17 46 46 H 1.08997 * 109.46728 * 333.53681 * 19 18 17 47 47 H 0.97007 * 119.99148 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 16 1.6199 -0.3195 -2.8428 6 6 2.6068 -1.5804 -3.4365 7 7 3.1718 -2.2073 -2.4656 8 6 2.8868 -1.7581 -1.2405 9 6 3.4484 -2.3505 -0.0148 10 8 4.3407 -1.7797 0.5830 11 7 2.9737 -3.5253 0.4444 12 6 1.9777 -4.2670 -0.3327 13 6 3.4538 -4.0608 1.7209 14 6 2.5633 -3.5500 2.8553 15 1 1.5372 -3.8768 2.6871 16 8 2.6087 -2.1221 2.8904 17 6 3.0650 -4.1086 4.1884 18 7 2.1445 -3.7178 5.2590 19 6 1.0124 -4.5817 5.6034 20 6 2.3423 -2.5453 5.9380 21 1 2.9189 -1.7510 5.4874 22 6 1.8016 -2.3774 7.2055 23 7 1.2812 -3.4062 7.8404 24 14 1.8129 -0.6915 8.0099 25 1 2.4498 0.2894 7.0948 26 1 0.4177 -0.2693 8.2940 27 1 2.5794 -0.7543 9.2803 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 2.7377 -1.8188 -4.4817 36 1 2.4822 -4.8797 -1.0797 37 1 1.4007 -4.9083 0.3337 38 1 1.3087 -3.5649 -0.8304 39 1 3.4192 -5.1498 1.6940 40 1 4.4799 -3.7339 1.8890 41 1 3.4933 -1.7602 3.0370 42 1 3.1149 -5.1960 4.1310 43 1 4.0574 -3.7101 4.3990 44 1 1.2985 -5.2487 6.4165 45 1 0.1687 -3.9670 5.9172 46 1 0.7278 -5.1718 4.7323 47 1 0.9030 -3.2887 8.7260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284517159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = -17.633112 kcal Electronic energy + Delta-G solvation = -29041.366883 eV Core-core repulsion = 25159.133861 eV Total energy + Delta-G solvation = -3882.233022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79116 -38.91132 -37.12006 -35.92335 -35.29632 -34.46826 -31.36994 -30.35271 -29.33802 -27.28600 -26.97166 -26.42429 -25.80851 -25.06665 -22.76402 -21.68567 -21.24587 -20.42588 -18.81826 -18.10174 -17.12591 -16.82773 -16.39106 -15.97681 -15.27872 -15.03435 -14.94954 -14.59376 -14.33080 -14.31064 -13.99206 -13.60725 -13.38972 -13.22111 -13.18933 -12.95714 -12.77456 -12.44669 -12.35139 -12.21455 -11.85443 -11.63739 -11.53891 -11.36972 -11.02765 -10.91031 -10.82293 -10.60696 -10.56004 -10.32550 -10.07677 -9.95581 -9.86296 -9.83886 -9.62941 -9.59728 -9.06362 -8.58559 -8.34343 -6.63965 -5.63543 -3.07914 0.42992 1.03842 1.43809 2.22837 2.66376 3.04702 3.43911 3.51031 3.54439 4.04953 4.41829 4.57183 4.69550 4.74382 4.99014 5.00531 5.06334 5.15507 5.18528 5.35768 5.38351 5.46666 5.47796 5.53264 5.58282 5.68132 5.69873 5.74746 5.77370 5.90010 5.99469 6.01032 6.09652 6.12585 6.17094 6.49038 6.55006 6.73819 6.82575 7.27779 7.33376 7.44290 7.76866 7.93213 8.15149 8.38964 8.49999 9.32830 9.94786 10.42808 11.42313 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.003352 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.841181 B = 8351.858952 C = 9401.487802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.030 4.030 3 C -0.142 4.142 4 C -0.190 4.190 5 S 0.195 5.805 6 C -0.011 4.011 7 N -0.435 5.435 8 C 0.015 3.985 9 C 0.608 3.392 10 O -0.522 6.522 11 N -0.594 5.594 12 C 0.086 3.914 13 C 0.080 3.920 14 C 0.073 3.927 15 H 0.086 0.914 16 O -0.543 6.543 17 C 0.125 3.875 18 N -0.594 5.594 19 C 0.165 3.835 20 C -0.234 4.234 21 H 0.071 0.929 22 C -0.006 4.006 23 N -0.915 5.915 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.368 0.632 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.027 0.973 45 H 0.046 0.954 46 H -0.009 1.009 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 2.460 -24.428 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 C -0.200 4.200 4 C -0.313 4.313 5 S 0.450 5.550 6 C -0.310 4.310 7 N -0.149 5.149 8 C -0.120 4.120 9 C 0.392 3.608 10 O -0.397 6.397 11 N -0.326 5.326 12 C -0.057 4.057 13 C -0.043 4.043 14 C 0.009 3.991 15 H 0.104 0.896 16 O -0.347 6.347 17 C -0.004 4.004 18 N -0.316 5.316 19 C 0.021 3.979 20 C -0.364 4.364 21 H 0.089 0.911 22 C -0.202 4.202 23 N -0.562 5.562 24 Si 0.735 3.265 25 H -0.203 1.203 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.219 0.781 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.215 0.785 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.065 0.935 46 H 0.010 0.990 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.977 2.921 -24.645 24.896 hybrid contribution 0.835 0.263 1.133 1.431 sum -1.143 3.184 -23.512 23.754 Atomic orbital electron populations 1.21890 0.93413 1.02415 1.02316 1.19830 0.96131 0.96063 0.93090 1.21876 1.01866 0.94095 1.02175 1.25577 1.03091 1.01206 1.01452 1.82733 1.43621 1.32494 0.96116 1.28320 1.00793 0.98416 1.03496 1.67008 1.22225 1.28034 0.97659 1.20263 1.01264 0.97713 0.92733 1.16915 0.81371 0.80307 0.82194 1.90795 1.29207 1.60902 1.58808 1.47561 1.42518 1.20714 1.21855 1.21699 0.91498 0.96559 0.95947 1.22487 1.00266 0.98840 0.82740 1.23174 0.99248 0.82554 0.94073 0.89614 1.86517 1.34266 1.18927 1.94967 1.21316 0.93988 0.96851 0.88226 1.43766 1.27163 1.23157 1.37498 1.20792 0.90191 0.93084 0.93872 1.19260 1.30418 0.91176 0.95559 0.91149 1.25004 1.01783 0.97220 0.96224 1.70086 1.44814 1.27991 1.13325 0.86173 0.77189 0.84111 0.79066 1.20291 1.21856 1.21958 0.91108 0.92272 0.92783 0.87362 0.91236 0.91994 0.92819 0.78120 0.92375 0.90605 0.92047 0.89829 0.89479 0.78547 0.93935 0.93017 0.95475 0.93497 0.99004 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.05 37.15 0.34 -1.16 16 2 C -0.03 -0.37 3.19 -91.78 -0.29 -0.67 16 3 C -0.14 -1.57 9.15 37.16 0.34 -1.23 16 4 C -0.19 -2.28 5.03 -35.39 -0.18 -2.45 16 5 S 0.19 1.61 22.45 -107.50 -2.41 -0.81 16 6 C -0.01 -0.10 12.17 51.43 0.63 0.53 16 7 N -0.44 -5.47 10.68 -12.36 -0.13 -5.60 16 8 C 0.02 0.21 4.62 -84.52 -0.39 -0.18 16 9 C 0.61 9.72 5.81 -12.59 -0.07 9.65 16 10 O -0.52 -9.86 15.81 3.44 0.05 -9.80 16 11 N -0.59 -8.35 2.83 -182.91 -0.52 -8.86 16 12 C 0.09 0.95 10.22 59.85 0.61 1.56 16 13 C 0.08 1.13 5.15 -4.04 -0.02 1.11 16 14 C 0.07 1.26 3.48 -26.73 -0.09 1.16 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 16 O -0.54 -10.50 11.27 -37.04 -0.42 -10.92 16 17 C 0.13 2.47 5.33 -4.04 -0.02 2.45 16 18 N -0.59 -14.89 2.91 -181.12 -0.53 -15.42 16 19 C 0.17 4.10 8.96 59.85 0.54 4.64 16 20 C -0.23 -6.50 9.22 -15.06 -0.14 -6.64 16 21 H 0.07 1.94 7.58 -52.49 -0.40 1.54 16 22 C -0.01 -0.16 5.14 -17.43 -0.09 -0.25 16 23 N -0.92 -27.18 10.54 55.49 0.59 -26.59 16 24 Si 0.90 22.57 29.57 -169.99 -5.03 17.54 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.47 7.85 -51.92 -0.41 0.06 16 31 H 0.11 1.69 6.94 -51.93 -0.36 1.33 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 38 H 0.06 0.68 6.99 -51.93 -0.36 0.31 16 39 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 40 H 0.09 1.31 7.36 -51.93 -0.38 0.93 16 41 H 0.37 6.90 8.62 45.56 0.39 7.29 16 42 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 43 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 44 H 0.03 0.72 7.47 -51.93 -0.39 0.33 16 45 H 0.05 1.27 7.11 -51.93 -0.37 0.90 16 46 H -0.01 -0.18 8.04 -51.93 -0.42 -0.60 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -34.15 397.45 -8.13 -42.29 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.88 Total: 3.66 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 1.15 Total: 8.53 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.59 Total: -56.48 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.36 Total: -20.73 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.41 Total: -0.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.15 -8.13 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284517159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.653 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds