Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47157 * 2 1 4 4 C 1.50703 * 109.46909 * 240.00159 * 2 1 3 5 5 S 1.70947 * 125.58587 * 55.41968 * 4 2 1 6 6 C 1.70774 * 91.12735 * 179.97438 * 5 4 2 7 7 N 1.28644 * 110.56208 * 0.02562 * 6 5 4 8 8 C 1.33565 * 115.76514 * 359.73561 * 7 6 5 9 9 C 1.47266 * 123.14410 * 180.30270 * 8 7 6 10 10 O 1.21630 * 119.99983 * 104.27238 * 9 8 7 11 11 N 1.34774 * 119.99733 * 284.27634 * 9 8 7 12 12 C 1.46497 * 120.00167 * 5.02244 * 11 9 8 13 13 C 1.46507 * 120.00045 * 185.02111 * 11 9 8 14 14 C 1.52993 * 109.47010 * 89.99959 * 13 11 9 15 15 H 1.09002 * 109.47495 * 59.99696 * 14 13 11 16 16 O 1.42906 * 109.47161 * 300.00111 * 14 13 11 17 17 C 1.53001 * 109.47208 * 180.02562 * 14 13 11 18 18 N 1.46501 * 109.47076 * 184.99974 * 17 14 13 19 19 C 1.46504 * 120.00063 * 90.00024 * 18 17 14 20 20 C 1.36933 * 120.00186 * 269.99579 * 18 17 14 21 21 H 1.08001 * 119.99973 * 22.23629 * 20 18 17 22 22 C 1.38816 * 120.00324 * 202.23498 * 20 18 17 23 23 N 1.31622 * 119.99406 * 10.59092 * 22 20 18 24 24 Si 1.86797 * 120.00037 * 190.58859 * 22 20 18 25 25 H 1.48497 * 109.47263 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47064 * 120.00150 * 24 22 20 27 27 H 1.48505 * 109.47154 * 240.00011 * 24 22 20 28 28 H 1.09002 * 109.47164 * 299.99735 * 1 2 3 29 29 H 1.09003 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47729 * 59.99719 * 1 2 3 31 31 H 1.08995 * 109.47432 * 120.00336 * 2 1 3 32 32 H 1.09002 * 109.46867 * 60.00083 * 3 2 1 33 33 H 1.09004 * 109.47445 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47437 * 300.00054 * 3 2 1 35 35 H 1.07998 * 124.71533 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47608 * 84.85083 * 12 11 9 37 37 H 1.09003 * 109.47440 * 204.85201 * 12 11 9 38 38 H 1.09003 * 109.47396 * 324.85081 * 12 11 9 39 39 H 1.08994 * 109.47034 * 210.00345 * 13 11 9 40 40 H 1.09002 * 109.46813 * 329.99825 * 13 11 9 41 41 H 0.96697 * 114.00075 * 300.00236 * 16 14 13 42 42 H 1.09001 * 109.46948 * 304.99749 * 17 14 13 43 43 H 1.08995 * 109.47366 * 64.99674 * 17 14 13 44 44 H 1.08995 * 109.47354 * 93.53606 * 19 18 17 45 45 H 1.09003 * 109.46919 * 213.54368 * 19 18 17 46 46 H 1.08997 * 109.46728 * 333.53681 * 19 18 17 47 47 H 0.97007 * 119.99148 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 16 1.6199 -0.3195 -2.8428 6 6 2.6068 -1.5804 -3.4365 7 7 3.1718 -2.2073 -2.4656 8 6 2.8868 -1.7581 -1.2405 9 6 3.4484 -2.3505 -0.0148 10 8 4.3407 -1.7797 0.5830 11 7 2.9737 -3.5253 0.4444 12 6 1.9777 -4.2670 -0.3327 13 6 3.4538 -4.0608 1.7209 14 6 2.5633 -3.5500 2.8553 15 1 1.5372 -3.8768 2.6871 16 8 2.6087 -2.1221 2.8904 17 6 3.0650 -4.1086 4.1884 18 7 2.1445 -3.7178 5.2590 19 6 1.0124 -4.5817 5.6034 20 6 2.3423 -2.5453 5.9380 21 1 2.9189 -1.7510 5.4874 22 6 1.8016 -2.3774 7.2055 23 7 1.2812 -3.4062 7.8404 24 14 1.8129 -0.6915 8.0099 25 1 2.4498 0.2894 7.0948 26 1 0.4177 -0.2693 8.2940 27 1 2.5794 -0.7543 9.2803 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 2.7377 -1.8188 -4.4817 36 1 2.4822 -4.8797 -1.0797 37 1 1.4007 -4.9083 0.3337 38 1 1.3087 -3.5649 -0.8304 39 1 3.4192 -5.1498 1.6940 40 1 4.4799 -3.7339 1.8890 41 1 3.4933 -1.7602 3.0370 42 1 3.1149 -5.1960 4.1310 43 1 4.0574 -3.7101 4.3990 44 1 1.2985 -5.2487 6.4165 45 1 0.1687 -3.9670 5.9172 46 1 0.7278 -5.1718 4.7323 47 1 0.9030 -3.2887 8.7260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284517159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -41.914565 kcal Electronic energy + Delta-G solvation = -29042.419806 eV Core-core repulsion = 25159.133861 eV Total energy + Delta-G solvation = -3883.285945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77952 -39.99329 -38.62229 -36.88009 -36.73640 -36.04549 -33.30827 -31.56407 -30.55274 -28.21873 -28.14245 -27.86910 -27.46277 -26.20723 -24.18357 -22.69233 -22.44371 -22.04504 -19.87930 -18.96321 -18.77388 -18.08611 -17.76236 -17.16957 -16.82420 -16.31166 -16.18618 -16.12219 -15.43746 -15.28529 -15.22271 -14.92665 -14.78234 -14.58674 -14.48073 -14.07589 -13.96846 -13.75350 -13.39076 -13.17152 -13.08706 -13.04236 -12.81979 -12.66480 -12.51694 -12.48054 -12.27289 -12.22614 -12.08488 -11.89286 -11.85136 -11.79612 -11.21586 -11.14467 -10.76081 -10.58866 -10.39293 -9.86106 -9.68341 -8.67001 -7.78910 -5.24575 -0.35771 0.30488 0.65652 1.30758 1.43796 1.45504 1.56142 1.60291 2.01737 2.52747 3.20530 3.34837 3.49875 3.55596 3.74608 3.82928 3.98058 4.09073 4.10189 4.14962 4.21931 4.32524 4.46079 4.48975 4.55233 4.57215 4.65936 4.73027 4.76449 4.83480 4.83635 4.85235 4.88136 4.94918 5.12005 5.21416 5.24930 5.27582 5.37194 5.44293 5.67750 5.75190 6.23028 6.37136 6.49692 6.89901 7.01115 7.20513 7.91439 8.33118 9.24802 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.003352 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.841181 B = 8351.858952 C = 9401.487802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.138 4.138 4 C -0.214 4.214 5 S 0.273 5.727 6 C -0.005 4.005 7 N -0.468 5.468 8 C -0.006 4.006 9 C 0.601 3.399 10 O -0.566 6.566 11 N -0.594 5.594 12 C 0.085 3.915 13 C 0.089 3.911 14 C 0.087 3.913 15 H 0.081 0.919 16 O -0.558 6.558 17 C 0.123 3.877 18 N -0.612 5.612 19 C 0.179 3.821 20 C -0.235 4.235 21 H 0.067 0.933 22 C -0.061 4.061 23 N -0.944 5.944 24 Si 0.963 3.037 25 H -0.271 1.271 26 H -0.293 1.293 27 H -0.292 1.292 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.242 0.758 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.367 0.633 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.003 0.997 45 H 0.015 0.985 46 H 0.030 0.970 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 2.702 -27.637 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.051 4.051 3 C -0.196 4.196 4 C -0.338 4.338 5 S 0.530 5.470 6 C -0.303 4.303 7 N -0.183 5.183 8 C -0.141 4.141 9 C 0.386 3.614 10 O -0.445 6.445 11 N -0.325 5.325 12 C -0.057 4.057 13 C -0.034 4.034 14 C 0.024 3.976 15 H 0.099 0.901 16 O -0.363 6.363 17 C -0.004 4.004 18 N -0.334 5.334 19 C 0.034 3.966 20 C -0.366 4.366 21 H 0.085 0.915 22 C -0.255 4.255 23 N -0.593 5.593 24 Si 0.792 3.208 25 H -0.196 1.196 26 H -0.220 1.220 27 H -0.219 1.219 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.258 0.742 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.214 0.786 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.034 0.966 46 H 0.048 0.952 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.727 3.145 -27.910 28.218 hybrid contribution 1.059 0.182 1.975 2.249 sum -1.668 3.326 -25.934 26.200 Atomic orbital electron populations 1.21853 0.92058 1.02295 1.03276 1.19708 0.97171 0.96201 0.92006 1.21847 1.00692 0.93705 1.03369 1.25670 1.03347 1.01067 1.03704 1.82401 1.41717 1.30767 0.92126 1.29026 0.99175 0.97562 1.04525 1.67012 1.23962 1.29673 0.97635 1.20048 1.02576 0.98827 0.92625 1.17403 0.80846 0.80344 0.82815 1.90751 1.31221 1.62109 1.60380 1.47663 1.42694 1.20519 1.21638 1.21863 0.91049 0.96510 0.96267 1.22302 0.98688 1.00457 0.81976 1.22939 0.99407 0.81452 0.93822 0.90083 1.86506 1.34375 1.20343 1.95075 1.21514 0.92737 0.98450 0.87720 1.43991 1.28268 1.22621 1.38543 1.20525 0.89113 0.92307 0.94618 1.19488 1.29329 0.92162 0.95572 0.91510 1.25694 1.02443 1.00256 0.97068 1.70236 1.46138 1.29525 1.13398 0.85252 0.76831 0.80665 0.78053 1.19602 1.22036 1.21949 0.91634 0.92905 0.90284 0.91613 0.91289 0.93780 0.90334 0.74242 0.91056 0.89022 0.92096 0.86524 0.90583 0.78633 0.91396 0.93580 0.97885 0.96648 0.95165 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.05 71.98 0.65 -2.09 16 2 C -0.03 -0.74 3.19 -11.54 -0.04 -0.77 16 3 C -0.14 -3.00 9.15 71.98 0.66 -2.34 16 4 C -0.21 -4.90 5.03 24.99 0.13 -4.78 16 5 S 0.27 3.61 22.45 -56.49 -1.27 2.34 16 6 C 0.00 -0.07 12.17 130.71 1.59 1.52 16 7 N -0.47 -10.95 10.68 -193.02 -2.06 -13.01 16 8 C -0.01 -0.15 4.62 40.56 0.19 0.03 16 9 C 0.60 19.50 5.81 86.62 0.50 20.00 16 10 O -0.57 -22.36 15.81 -2.40 -0.04 -22.40 16 11 N -0.59 -16.34 2.83 -850.85 -2.41 -18.75 16 12 C 0.09 1.73 10.22 127.77 1.31 3.04 16 13 C 0.09 2.44 5.15 86.38 0.44 2.88 16 14 C 0.09 2.94 3.48 30.59 0.11 3.05 16 15 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 16 O -0.56 -22.27 11.27 -147.25 -1.66 -23.93 16 17 C 0.12 4.79 5.33 86.38 0.46 5.25 16 18 N -0.61 -30.82 2.91 -726.93 -2.11 -32.93 16 19 C 0.18 8.95 8.96 127.77 1.14 10.09 16 20 C -0.23 -13.23 9.22 84.04 0.78 -12.45 16 21 H 0.07 3.74 7.58 -2.91 -0.02 3.72 16 22 C -0.06 -3.54 5.14 84.86 0.44 -3.10 16 23 N -0.94 -57.35 10.54 21.65 0.23 -57.12 16 24 Si 0.96 47.31 29.57 68.60 2.03 49.34 16 25 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.15 7.85 -2.38 -0.02 1.13 16 31 H 0.07 2.18 6.94 -2.39 -0.02 2.16 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.24 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.55 8.03 -2.39 -0.02 1.53 16 38 H 0.06 1.25 6.99 -2.39 -0.02 1.24 16 39 H 0.12 2.42 8.07 -2.39 -0.02 2.40 16 40 H 0.08 2.29 7.36 -2.39 -0.02 2.28 16 41 H 0.37 14.53 8.62 -74.06 -0.64 13.89 16 42 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 43 H 0.05 1.84 8.04 -2.39 -0.02 1.82 16 44 H 0.00 0.16 7.47 -2.39 -0.02 0.14 16 45 H 0.01 0.83 7.11 -2.39 -0.02 0.81 16 46 H 0.03 1.24 8.04 -2.39 -0.02 1.22 16 47 H 0.24 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -77.10 397.45 1.40 -75.70 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.33 Total: 20.43 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 8.36 Total: 20.34 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -6.35 Total: -121.81 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -1.70 Total: -46.33 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.27 Total: 2.34 kcal Total: -77.10 1.40 -75.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284517159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.786 kcal (2) G-P(sol) polarization free energy of solvation -77.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds