Wall clock time and date at job start Sat Apr 11 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47106 * 2 1 4 4 C 1.50702 * 109.47022 * 119.99828 * 2 1 3 5 5 S 1.70942 * 125.58539 * 304.19984 * 4 2 1 6 6 C 1.70770 * 91.12813 * 180.19844 * 5 4 2 7 7 N 1.28655 * 110.55888 * 359.80704 * 6 5 4 8 8 C 1.33557 * 115.76474 * 0.02562 * 7 6 5 9 9 C 1.47268 * 123.13989 * 179.97438 * 8 7 6 10 10 O 1.21627 * 120.00165 * 254.81235 * 9 8 7 11 11 N 1.34784 * 119.99790 * 74.81775 * 9 8 7 12 12 C 1.46494 * 119.99789 * 354.62998 * 11 9 8 13 13 C 1.46497 * 119.99733 * 174.63770 * 11 9 8 14 14 C 1.53000 * 109.47391 * 89.99459 * 13 11 9 15 15 H 1.08997 * 109.46994 * 304.99537 * 14 13 11 16 16 O 1.42899 * 109.47078 * 64.99861 * 14 13 11 17 17 C 1.53001 * 109.47076 * 184.99774 * 14 13 11 18 18 N 1.46498 * 109.46969 * 180.02562 * 17 14 13 19 19 C 1.46502 * 119.99739 * 270.00068 * 18 17 14 20 20 C 1.36934 * 120.00438 * 89.99934 * 18 17 14 21 21 H 1.08000 * 119.99986 * 343.78228 * 20 18 17 22 22 C 1.38814 * 120.00212 * 163.50023 * 20 18 17 23 23 N 1.31618 * 119.99515 * 343.95810 * 22 20 18 24 24 Si 1.86793 * 120.00035 * 163.95696 * 22 20 18 25 25 H 1.48500 * 109.47130 * 90.00158 * 24 22 20 26 26 H 1.48495 * 109.47236 * 210.00267 * 24 22 20 27 27 H 1.48503 * 109.47210 * 330.00237 * 24 22 20 28 28 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47194 * 300.00314 * 1 2 3 30 30 H 1.09004 * 109.47172 * 59.99805 * 1 2 3 31 31 H 1.09002 * 109.46803 * 239.99901 * 2 1 3 32 32 H 1.09005 * 109.47029 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46928 * 299.99442 * 3 2 1 34 34 H 1.08994 * 109.47302 * 59.99950 * 3 2 1 35 35 H 1.07999 * 124.72533 * 179.83879 * 6 5 4 36 36 H 1.08998 * 109.47313 * 269.78867 * 12 11 9 37 37 H 1.08997 * 109.47526 * 29.79143 * 12 11 9 38 38 H 1.09004 * 109.46773 * 149.78992 * 12 11 9 39 39 H 1.08998 * 109.47184 * 329.99468 * 13 11 9 40 40 H 1.09007 * 109.46904 * 209.99772 * 13 11 9 41 41 H 0.96702 * 114.00149 * 59.99580 * 16 14 13 42 42 H 1.09000 * 109.47011 * 60.00208 * 17 14 13 43 43 H 1.09005 * 109.47334 * 299.99849 * 17 14 13 44 44 H 1.09012 * 109.47082 * 264.71500 * 19 18 17 45 45 H 1.08999 * 109.47481 * 24.70807 * 19 18 17 46 46 H 1.09001 * 109.47282 * 144.71527 * 19 18 17 47 47 H 0.97002 * 119.99451 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 16 1.6272 -0.3137 2.8432 6 6 2.6132 -1.5754 3.4368 7 7 3.1701 -2.2088 2.4653 8 6 2.8754 -1.7673 1.2397 9 6 3.4223 -2.3717 0.0132 10 8 4.3000 -1.8017 -0.6066 11 7 2.9502 -3.5565 -0.4226 12 6 1.9787 -4.2993 0.3841 13 6 3.4086 -4.1016 -1.7028 14 6 4.6474 -4.9696 -1.4733 15 1 5.4073 -4.3877 -0.9517 16 8 4.2927 -6.1066 -0.6836 17 6 5.1994 -5.4372 -2.8215 18 7 6.3853 -6.2689 -2.6016 19 6 7.7130 -5.6520 -2.5490 20 6 6.2527 -7.6228 -2.4454 21 1 5.2855 -8.0485 -2.2222 22 6 7.3603 -8.4487 -2.5796 23 7 8.4529 -7.9956 -3.1567 24 14 7.2998 -10.2032 -1.9413 25 1 6.8083 -11.1039 -3.0148 26 1 8.6613 -10.6258 -1.5253 27 1 6.3818 -10.2747 -0.7762 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 2.7498 -1.8094 4.4823 36 1 2.5065 -4.9695 1.0625 37 1 1.3750 -3.5992 0.9616 38 1 1.3316 -4.8818 -0.2718 39 1 3.6586 -3.2829 -2.3776 40 1 2.6171 -4.7074 -2.1441 41 1 3.6194 -6.6712 -1.0873 42 1 5.4700 -4.5700 -3.4237 43 1 4.4396 -6.0192 -3.3431 44 1 8.1801 -5.7104 -3.5322 45 1 7.6168 -4.6071 -2.2540 46 1 8.3302 -6.1795 -1.8217 47 1 9.2268 -8.5729 -3.2508 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284517160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:01 Heat of formation + Delta-G solvation = -14.101631 kcal Electronic energy + Delta-G solvation = -28373.477956 eV Core-core repulsion = 24491.398071 eV Total energy + Delta-G solvation = -3882.079886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.87280 -38.95123 -37.25865 -36.16988 -35.30575 -34.40885 -31.38944 -30.44522 -29.41105 -27.57693 -26.85076 -26.50018 -25.77153 -25.10655 -22.73395 -21.89923 -21.43866 -20.39956 -18.86466 -18.18882 -17.16437 -16.89456 -16.44315 -15.83023 -15.72079 -14.88785 -14.75009 -14.60472 -14.57875 -14.53008 -14.14223 -13.67876 -13.44055 -13.42309 -13.22743 -12.91484 -12.72160 -12.64483 -12.41694 -12.33734 -11.88488 -11.80197 -11.65222 -11.54924 -11.23378 -10.98874 -10.76627 -10.62036 -10.49596 -10.25015 -10.15999 -9.99142 -9.89851 -9.82911 -9.72579 -9.60776 -9.14280 -8.55806 -8.30814 -6.66263 -5.59912 -2.98580 0.33297 0.95775 1.35295 2.14368 2.58557 3.03048 3.45792 3.52925 3.56612 3.98910 4.21594 4.44672 4.60259 4.66456 4.68900 4.96052 5.01558 5.03694 5.10502 5.19150 5.21431 5.35033 5.38953 5.42701 5.48051 5.54061 5.56516 5.64826 5.78574 5.81215 5.82161 5.85834 5.92195 6.03737 6.10526 6.47777 6.59668 6.81388 6.90488 7.25575 7.29050 7.54498 7.80658 7.93352 8.06615 8.35288 8.49605 9.34858 9.99142 10.46009 11.46136 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.002567 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.345255 B =10904.875252 C =11305.566625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.023 4.023 3 C -0.145 4.145 4 C -0.206 4.206 5 S 0.194 5.806 6 C -0.003 4.003 7 N -0.429 5.429 8 C 0.025 3.975 9 C 0.596 3.404 10 O -0.523 6.523 11 N -0.591 5.591 12 C 0.089 3.911 13 C 0.084 3.916 14 C 0.071 3.929 15 H 0.091 0.909 16 O -0.540 6.540 17 C 0.126 3.874 18 N -0.594 5.594 19 C 0.164 3.836 20 C -0.233 4.233 21 H 0.069 0.931 22 C -0.008 4.008 23 N -0.913 5.913 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.281 1.281 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.204 0.796 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.359 0.641 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.027 0.973 45 H -0.005 1.005 46 H 0.047 0.953 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.421 18.573 10.563 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.044 4.044 3 C -0.203 4.203 4 C -0.329 4.329 5 S 0.450 5.550 6 C -0.302 4.302 7 N -0.143 5.143 8 C -0.110 4.110 9 C 0.379 3.621 10 O -0.398 6.398 11 N -0.322 5.322 12 C -0.054 4.054 13 C -0.039 4.039 14 C 0.008 3.992 15 H 0.109 0.891 16 O -0.343 6.343 17 C -0.003 4.003 18 N -0.316 5.316 19 C 0.019 3.981 20 C -0.363 4.363 21 H 0.087 0.913 22 C -0.205 4.205 23 N -0.560 5.560 24 Si 0.733 3.267 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.221 0.779 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.204 0.796 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.014 0.986 46 H 0.066 0.934 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.553 19.280 11.223 30.334 hybrid contribution 0.163 -1.751 -0.536 1.839 sum -20.390 17.529 10.687 28.935 Atomic orbital electron populations 1.21939 0.93369 1.02488 1.02567 1.19697 0.95990 0.96075 0.92649 1.21901 1.02197 0.93872 1.02296 1.25450 1.04372 1.01560 1.01499 1.82680 1.43964 1.32663 0.95724 1.28432 1.00203 0.97864 1.03686 1.67056 1.21772 1.27880 0.97588 1.20259 1.00768 0.97135 0.92874 1.17109 0.81518 0.80648 0.82803 1.90846 1.28970 1.62588 1.57390 1.47614 1.43726 1.19040 1.21849 1.21729 0.91556 0.96392 0.95707 1.22473 0.98355 0.99004 0.84060 1.23217 0.93804 0.86117 0.96084 0.89088 1.86662 1.62233 1.38156 1.47261 1.21295 0.91149 0.94814 0.93034 1.43781 1.00744 1.03535 1.83530 1.20818 0.86020 0.91073 1.00156 1.19136 0.95120 0.81835 1.40214 0.91310 1.24866 0.97189 0.97903 1.00532 1.70127 1.04418 1.35626 1.45821 0.86277 0.76770 0.84873 0.78763 1.21807 1.21799 1.20621 0.92149 0.92248 0.91362 0.89126 0.91728 0.91444 0.92383 0.77923 0.91256 0.92347 0.91127 0.89277 0.90177 0.79610 0.93665 0.93286 0.95444 0.98609 0.93420 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.06 37.16 0.34 -0.59 16 2 C -0.02 -0.21 3.19 -91.77 -0.29 -0.50 16 3 C -0.14 -1.14 9.15 37.16 0.34 -0.80 16 4 C -0.21 -2.13 5.03 -35.39 -0.18 -2.31 16 5 S 0.19 1.40 22.44 -107.50 -2.41 -1.01 16 6 C 0.00 -0.02 12.17 51.43 0.63 0.60 16 7 N -0.43 -5.71 10.66 -12.36 -0.13 -5.84 16 8 C 0.03 0.34 4.53 -84.53 -0.38 -0.04 16 9 C 0.60 9.58 6.37 -12.59 -0.08 9.50 16 10 O -0.52 -10.16 16.74 5.25 0.09 -10.07 16 11 N -0.59 -8.38 2.84 -182.91 -0.52 -8.90 16 12 C 0.09 1.01 9.95 59.84 0.60 1.61 16 13 C 0.08 1.21 5.07 -4.04 -0.02 1.19 16 14 C 0.07 1.32 3.48 -26.73 -0.09 1.23 16 15 H 0.09 2.04 8.14 -51.93 -0.42 1.61 16 16 O -0.54 -10.41 12.05 -35.23 -0.42 -10.83 16 17 C 0.13 2.60 5.36 -4.04 -0.02 2.58 16 18 N -0.59 -15.56 2.88 -181.11 -0.52 -16.08 16 19 C 0.16 4.38 8.98 59.85 0.54 4.91 16 20 C -0.23 -6.56 9.08 -15.06 -0.14 -6.70 16 21 H 0.07 1.85 7.74 -52.49 -0.41 1.44 16 22 C -0.01 -0.24 5.06 -17.43 -0.09 -0.33 16 23 N -0.91 -27.79 10.51 55.49 0.58 -27.21 16 24 Si 0.90 22.76 29.58 -169.99 -5.03 17.73 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.32 7.86 -51.92 -0.41 -0.09 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.97 7.17 -51.93 -0.37 0.60 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.20 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.60 6.78 -51.93 -0.35 0.25 16 38 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 39 H 0.09 1.31 7.50 -51.93 -0.39 0.92 16 40 H 0.08 0.91 7.90 -51.93 -0.41 0.50 16 41 H 0.36 5.65 9.05 45.56 0.41 6.07 16 42 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 44 H 0.03 0.77 7.49 -51.92 -0.39 0.38 16 45 H 0.00 -0.11 8.03 -51.93 -0.42 -0.53 16 46 H 0.05 1.38 6.98 -51.93 -0.36 1.01 16 47 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -36.55 399.34 -8.07 -44.62 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.86 Total: 1.22 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 1.14 Total: 10.36 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.59 Total: -58.03 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.34 Total: -20.90 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.41 Total: -1.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.55 -8.07 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284517160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.517 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds