Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00059 * 2 1 4 4 C 1.50690 * 109.47080 * 179.97438 * 3 2 1 5 5 N 1.29432 * 124.80303 * 90.02726 * 4 3 2 6 6 C 1.30947 * 117.36247 * 179.97438 * 5 4 3 7 7 C 1.35661 * 114.19111 * 359.97438 * 6 5 4 8 8 C 1.46691 * 126.12732 * 179.97438 * 7 6 5 9 9 O 1.21680 * 120.00125 * 353.13714 * 8 7 6 10 10 N 1.34777 * 119.99781 * 173.13666 * 8 7 6 11 11 C 1.46503 * 119.99802 * 2.87366 * 10 8 7 12 12 C 1.53004 * 109.47188 * 82.52451 * 11 10 8 13 13 N 1.46496 * 109.46881 * 179.97438 * 12 11 10 14 14 C 1.46502 * 120.00477 * 269.99869 * 13 12 11 15 15 C 1.36936 * 119.99788 * 90.00310 * 13 12 11 16 16 H 1.08005 * 120.00234 * 32.46956 * 15 13 12 17 17 C 1.38819 * 120.00207 * 212.47034 * 15 13 12 18 18 N 1.31613 * 119.99764 * 6.32297 * 17 15 13 19 19 Si 1.86799 * 120.00096 * 186.32017 * 17 15 13 20 20 H 1.48503 * 109.46979 * 60.00413 * 19 17 15 21 21 H 1.48497 * 109.47052 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47275 * 300.00381 * 19 17 15 23 23 C 1.46494 * 119.99985 * 182.86997 * 10 8 7 24 24 C 1.52997 * 109.47400 * 114.82018 * 23 10 8 25 25 C 1.53004 * 109.47069 * 234.81896 * 23 10 8 26 26 S 1.70956 * 124.80661 * 269.98211 * 4 3 2 27 27 H 1.09001 * 109.46783 * 300.00151 * 1 2 3 28 28 H 1.09002 * 109.47296 * 59.99899 * 1 2 3 29 29 H 1.08994 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47109 * 59.99526 * 3 2 1 31 31 H 1.08998 * 109.47021 * 300.00321 * 3 2 1 32 32 H 1.07999 * 122.90341 * 179.73323 * 6 5 4 33 33 H 1.09006 * 109.46985 * 202.52469 * 11 10 8 34 34 H 1.08993 * 109.47135 * 322.51992 * 11 10 8 35 35 H 1.08992 * 109.47054 * 299.99983 * 12 11 10 36 36 H 1.09002 * 109.46726 * 59.99908 * 12 11 10 37 37 H 1.09005 * 109.46837 * 94.68256 * 14 13 12 38 38 H 1.09001 * 109.47342 * 214.68201 * 14 13 12 39 39 H 1.08995 * 109.46906 * 334.68512 * 14 13 12 40 40 H 0.97001 * 120.00092 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.47307 * 354.81739 * 23 10 8 42 42 H 1.08996 * 109.47118 * 59.99605 * 24 23 10 43 43 H 1.08999 * 109.47529 * 179.97438 * 24 23 10 44 44 H 1.09003 * 109.46596 * 300.00294 * 24 23 10 45 45 H 1.08999 * 109.47214 * 60.00209 * 25 23 10 46 46 H 1.09003 * 109.47203 * 179.97438 * 25 23 10 47 47 H 1.08999 * 109.47321 * 299.99761 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2494 1.1284 -1.0618 6 6 5.5437 1.0264 -0.8917 7 6 5.9330 0.9961 0.4075 8 6 7.3123 0.8869 0.8948 9 8 8.2208 0.6881 0.1101 10 7 7.5732 1.0068 2.2116 11 6 6.4734 1.1832 3.1632 12 6 5.8683 -0.1807 3.5019 13 7 4.7689 -0.0043 4.4538 14 6 5.0344 -0.0384 5.8942 15 6 3.4929 0.1924 3.9974 16 1 3.1716 -0.2705 3.0760 17 6 2.6123 0.9867 4.7189 18 7 3.0373 1.6505 5.7729 19 14 0.8241 1.1134 4.1939 20 1 0.2015 -0.2344 4.2277 21 1 0.0986 2.0177 5.1219 22 1 0.7506 1.6582 2.8143 23 6 8.9566 0.9607 2.6914 24 6 9.3341 2.3167 3.2908 25 6 9.0893 -0.1247 3.7616 26 16 4.4847 1.1101 1.4047 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 6.2408 0.9672 -1.7146 33 1 6.8515 1.6491 4.0732 34 1 5.7081 1.8202 2.7199 35 1 5.4902 -0.6465 2.5919 36 1 6.6337 -0.8177 3.9452 37 1 5.1767 0.9780 6.2615 38 1 4.1893 -0.4957 6.4088 39 1 5.9348 -0.6226 6.0839 40 1 2.4221 2.2058 6.2769 41 1 9.6225 0.7334 1.8589 42 1 8.6682 2.5440 4.1233 43 1 10.3632 2.2823 3.6482 44 1 9.2395 3.0900 2.5284 45 1 8.8205 -1.0909 3.3345 46 1 10.1187 -0.1594 4.1182 47 1 8.4235 0.1025 4.5941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284561314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = -0.611028 kcal Electronic energy + Delta-G solvation = -29631.376243 eV Core-core repulsion = 25749.881353 eV Total energy + Delta-G solvation = -3881.494889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.99359 -39.06790 -37.51607 -36.62541 -35.44454 -32.88032 -31.42432 -30.76962 -28.37370 -27.98129 -27.10933 -26.09385 -25.98915 -23.94200 -23.66383 -22.23370 -20.84150 -19.80947 -18.50355 -18.08998 -17.14334 -16.49515 -16.34458 -16.13324 -15.41928 -15.32233 -14.97120 -14.73173 -14.30263 -14.05619 -13.96043 -13.69912 -13.43489 -13.32243 -12.82596 -12.80767 -12.47920 -12.36229 -12.18361 -12.13638 -11.86056 -11.76116 -11.37521 -11.24639 -11.09305 -11.05609 -10.84230 -10.73142 -10.71462 -10.51053 -10.21561 -10.07247 -9.75414 -9.55583 -8.97807 -8.82346 -8.78068 -8.52115 -8.14018 -6.86887 -6.02323 -3.55272 0.67977 1.86941 2.25279 2.78663 3.12371 3.18143 3.24452 3.26681 3.54683 4.00523 4.23228 4.62013 4.78417 5.10335 5.15585 5.19490 5.21048 5.27036 5.35897 5.38912 5.49406 5.51014 5.53325 5.64422 5.65820 5.69644 5.74324 5.79809 5.82325 5.89932 5.98607 6.03689 6.20720 6.29973 6.34108 6.52446 6.58170 6.63466 6.85037 7.14191 7.18018 7.53741 7.55421 7.58437 8.12560 8.17963 8.38757 8.95593 9.55690 10.11497 10.98278 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.006150 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.367600 B = 4552.055873 C = 6834.453011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.137 3.863 4 C -0.032 4.032 5 N -0.480 5.480 6 C 0.106 3.894 7 C -0.349 4.349 8 C 0.599 3.401 9 O -0.548 6.548 10 N -0.600 5.600 11 C 0.073 3.927 12 C 0.127 3.873 13 N -0.594 5.594 14 C 0.156 3.844 15 C -0.252 4.252 16 H 0.072 0.928 17 C 0.021 3.979 18 N -0.885 5.885 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.135 3.865 24 C -0.162 4.162 25 C -0.162 4.162 26 S 0.363 5.637 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.174 0.826 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.001 0.999 40 H 0.259 0.741 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 0.731 -3.709 5.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.058 3.942 4 C -0.302 4.302 5 N -0.197 5.197 6 C -0.056 4.056 7 C -0.473 4.473 8 C 0.387 3.613 9 O -0.428 6.428 10 N -0.333 5.333 11 C -0.054 4.054 12 C -0.002 4.002 13 N -0.317 5.317 14 C 0.012 3.988 15 C -0.386 4.386 16 H 0.089 0.911 17 C -0.181 4.181 18 N -0.526 5.526 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C 0.032 3.968 24 C -0.220 4.220 25 C -0.219 4.219 26 S 0.628 5.372 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.191 0.809 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.020 0.980 40 H 0.069 0.931 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.391 0.633 -3.406 4.848 hybrid contribution -0.783 0.443 -0.887 1.263 sum 2.608 1.075 -4.293 5.137 Atomic orbital electron populations 1.22788 0.80753 1.03009 1.00068 1.87955 1.19726 1.26535 1.95444 1.20832 0.85583 0.85902 1.01929 1.27781 1.01175 1.03963 0.97285 1.66200 1.04589 1.16159 1.32714 1.21845 0.90856 0.97738 0.95120 1.26559 1.00434 1.20336 0.99994 1.16879 0.86370 0.76080 0.81962 1.90738 1.45986 1.50774 1.55292 1.48045 1.07611 1.71578 1.06026 1.22980 0.87417 1.02229 0.92758 1.21594 0.91033 0.93229 0.94340 1.43787 1.02659 1.84335 1.00874 1.20890 0.95868 0.98671 0.83401 1.19095 0.87703 1.24359 1.07476 0.91073 1.25292 0.98806 0.96113 0.97936 1.69967 1.34394 1.29725 1.18536 0.86607 0.85138 0.78271 0.78213 1.20193 1.21230 1.20227 1.21024 0.82657 0.95431 0.97712 1.22160 1.01590 0.96843 1.01379 1.22210 1.02071 0.98707 0.98960 1.87344 0.91411 1.57658 1.00781 0.93809 0.93980 0.89316 0.90727 0.91161 0.80926 0.89062 0.90405 0.93180 0.92899 0.94576 0.94220 0.98008 0.93082 0.88322 0.91967 0.91563 0.92454 0.92127 0.91685 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.62 10.69 -35.23 -0.38 -7.00 16 3 C 0.14 2.29 6.51 36.00 0.23 2.53 16 4 C -0.03 -0.59 7.01 -13.29 -0.09 -0.68 16 5 N -0.48 -9.05 10.51 -11.50 -0.12 -9.17 16 6 C 0.11 1.92 11.10 -18.85 -0.21 1.71 16 7 C -0.35 -6.44 6.12 -37.09 -0.23 -6.66 16 8 C 0.60 11.02 7.58 -12.85 -0.10 10.92 16 9 O -0.55 -11.00 16.21 5.21 0.08 -10.92 16 10 N -0.60 -9.77 2.39 -167.64 -0.40 -10.17 16 11 C 0.07 1.27 4.39 -4.04 -0.02 1.25 16 12 C 0.13 2.37 5.02 -4.04 -0.02 2.35 16 13 N -0.59 -12.86 2.89 -181.12 -0.52 -13.39 16 14 C 0.16 3.32 9.06 59.85 0.54 3.86 16 15 C -0.25 -5.91 7.51 -15.06 -0.11 -6.02 16 16 H 0.07 1.69 6.65 -52.48 -0.35 1.34 16 17 C 0.02 0.51 5.24 -17.43 -0.09 0.42 16 18 N -0.88 -22.34 10.97 55.49 0.61 -21.73 16 19 Si 0.89 19.09 29.56 -169.99 -5.02 14.07 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -5.55 6.16 56.52 0.35 -5.20 16 23 C 0.13 1.84 3.22 -67.93 -0.22 1.62 16 24 C -0.16 -1.91 9.26 37.16 0.34 -1.57 16 25 C -0.16 -1.95 8.10 37.16 0.30 -1.65 16 26 S 0.36 6.81 12.43 -107.50 -1.34 5.48 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.24 7.20 -51.93 -0.37 0.86 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.17 2.84 8.06 -52.49 -0.42 2.41 16 33 H 0.09 1.54 6.46 -51.93 -0.34 1.20 16 34 H 0.08 1.48 4.37 -21.98 -0.10 1.38 16 35 H 0.05 0.99 6.06 -49.75 -0.30 0.69 16 36 H 0.05 0.92 6.02 -51.93 -0.31 0.60 16 37 H 0.04 0.82 7.21 -51.93 -0.37 0.45 16 38 H 0.04 0.91 7.76 -51.93 -0.40 0.51 16 39 H 0.00 0.03 7.84 -51.93 -0.41 -0.38 16 40 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 41 H 0.10 1.43 6.91 -51.93 -0.36 1.07 16 42 H 0.06 0.75 6.93 -51.93 -0.36 0.39 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.77 7.99 -51.93 -0.42 0.36 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.84 6.69 -51.93 -0.35 0.49 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -27.68 378.59 -6.94 -34.62 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.00 Total: 2.92 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 1.45 Total: 9.59 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.44 Total: -54.47 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.29 Total: -17.91 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.34 Total: 5.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.68 -6.94 -34.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284561314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.007 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds