Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99605 * 2 1 4 4 C 1.52997 * 109.46783 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46947 * 65.00294 * 4 3 2 6 6 C 1.36941 * 120.00187 * 274.38946 * 5 4 3 7 7 H 1.07997 * 119.99774 * 145.90796 * 6 5 4 8 8 C 1.38813 * 119.99878 * 325.92003 * 6 5 4 9 9 N 1.31620 * 119.99744 * 335.47614 * 8 6 5 10 10 Si 1.86793 * 120.00440 * 155.47930 * 8 6 5 11 11 H 1.48503 * 109.46869 * 59.99345 * 10 8 6 12 12 H 1.48491 * 109.47457 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46870 * 300.00115 * 10 8 6 14 14 C 1.46505 * 120.00163 * 94.39704 * 5 4 3 15 15 C 1.52995 * 109.46764 * 269.99764 * 14 5 4 16 16 N 1.46501 * 109.47212 * 180.02562 * 15 14 5 17 17 C 1.34776 * 120.00395 * 180.27788 * 16 15 14 18 18 O 1.21637 * 119.99740 * 359.71525 * 17 16 15 19 19 C 1.47264 * 120.00070 * 179.72086 * 17 16 15 20 20 C 1.35208 * 123.13678 * 179.70171 * 19 17 16 21 21 S 1.70949 * 108.82348 * 179.90343 * 20 19 17 22 22 C 1.70769 * 91.12874 * 0.30786 * 21 20 19 23 23 C 1.50703 * 124.71882 * 179.82502 * 22 21 20 24 24 C 1.53000 * 109.46779 * 299.99501 * 23 22 21 25 25 C 1.52997 * 109.47052 * 59.99517 * 23 22 21 26 26 N 1.28650 * 110.55984 * 359.81375 * 22 21 20 27 27 H 1.08993 * 109.47492 * 300.00395 * 1 2 3 28 28 H 1.09007 * 109.47126 * 60.00453 * 1 2 3 29 29 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46869 * 59.99790 * 3 2 1 31 31 H 1.09000 * 109.47063 * 299.99490 * 3 2 1 32 32 H 1.08997 * 109.47640 * 304.99902 * 4 3 2 33 33 H 1.08999 * 109.47087 * 184.99973 * 4 3 2 34 34 H 0.97003 * 119.99835 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47160 * 150.00049 * 14 5 4 36 36 H 1.08997 * 109.47175 * 29.99603 * 14 5 4 37 37 H 1.09000 * 109.47560 * 59.99647 * 15 14 5 38 38 H 1.09006 * 109.47001 * 299.99769 * 15 14 5 39 39 H 0.97000 * 119.99763 * 359.97438 * 16 15 14 40 40 H 1.07997 * 125.59103 * 0.02562 * 20 19 17 41 41 H 1.09001 * 109.46779 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47121 * 60.00145 * 24 23 22 43 43 H 1.08998 * 109.46989 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47146 * 299.99814 * 24 23 22 45 45 H 1.08994 * 109.47433 * 60.00342 * 25 23 22 46 46 H 1.09006 * 109.46529 * 179.97438 * 25 23 22 47 47 H 1.09001 * 109.47329 * 299.99663 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9765 0.5641 -1.2509 6 6 4.0116 -0.8002 -1.3635 7 1 3.7892 -1.2697 -2.3103 8 6 4.3329 -1.5796 -0.2606 9 7 5.0507 -1.0707 0.7182 10 14 3.7466 -3.3506 -0.1657 11 1 4.2919 -4.1148 -1.3163 12 1 4.2196 -3.9613 1.1024 13 1 2.2625 -3.3836 -0.2084 14 6 4.3804 1.4031 -2.3820 15 6 3.1613 1.7000 -3.2575 16 7 3.5652 2.5384 -4.3890 17 6 2.6497 2.9328 -5.2961 18 8 1.4891 2.5883 -5.1782 19 6 3.0546 3.7806 -6.4301 20 6 2.1912 4.2075 -7.3790 21 16 3.0442 5.1629 -8.5112 22 6 4.5050 4.9299 -7.6580 23 6 5.8373 5.5055 -8.0641 24 6 6.2135 4.9891 -9.4543 25 6 5.7452 7.0323 -8.0948 26 7 4.3099 4.1949 -6.6204 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6884 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5687 0.8427 33 1 3.9783 2.1766 0.0902 34 1 5.2755 -1.6154 1.4887 35 1 5.1327 0.8798 -2.9722 36 1 4.7969 2.3390 -2.0098 37 1 2.4089 2.2232 -2.6674 38 1 2.7447 0.7640 -3.6298 39 1 4.4906 2.8133 -4.4829 40 1 1.1353 3.9835 -7.4146 41 1 6.5984 5.2020 -7.3452 42 1 5.4523 5.2928 -10.1729 43 1 7.1773 5.4050 -9.7478 44 1 6.2791 3.9013 -9.4324 45 1 5.4773 7.4002 -7.1044 46 1 6.7091 7.4486 -8.3880 47 1 4.9841 7.3361 -8.8135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284667675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = -22.867715 kcal Electronic energy + Delta-G solvation = -27400.843934 eV Core-core repulsion = 23518.383923 eV Total energy + Delta-G solvation = -3882.460012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.55507 -38.71344 -37.20360 -35.91159 -35.65905 -34.12611 -31.36132 -30.31419 -29.43198 -27.65929 -27.64742 -25.76819 -25.56715 -24.05516 -23.01100 -21.52131 -20.90758 -20.37722 -19.70528 -18.43393 -16.74641 -16.62256 -16.02745 -15.71468 -15.54726 -15.27602 -14.91404 -14.68515 -14.55942 -14.47299 -13.98576 -13.80863 -13.61211 -13.40691 -13.24889 -13.13582 -12.68607 -12.50755 -12.24812 -12.09383 -11.89027 -11.75288 -11.66534 -11.38976 -11.13721 -10.81615 -10.69625 -10.63148 -10.50605 -10.12404 -10.03090 -9.93550 -9.88273 -9.87950 -9.66781 -9.14127 -8.77276 -8.56798 -8.34725 -6.58027 -5.67838 -3.20901 0.32413 0.98114 1.39088 1.88511 3.37812 3.44212 3.50430 3.54835 3.63289 3.71958 4.39135 4.57978 4.62765 4.64454 4.79397 4.96102 5.05540 5.12954 5.13446 5.33539 5.37439 5.42503 5.52614 5.59156 5.70684 5.75443 5.76377 5.82456 5.85789 5.90685 5.96158 6.14730 6.21896 6.33389 6.36709 6.60549 6.68839 6.71619 6.74242 6.97311 7.22235 7.71062 7.81020 7.92907 8.16962 8.39449 8.60532 9.25698 9.91657 10.42622 11.33859 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016559 B = 0.002379 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.491403 B =11766.259730 C =12432.605239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.570 5.570 6 C -0.246 4.246 7 H 0.058 0.942 8 C 0.023 3.977 9 N -0.891 5.891 10 Si 0.898 3.102 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.138 3.862 15 C 0.095 3.905 16 N -0.703 5.703 17 C 0.586 3.414 18 O -0.540 6.540 19 C 0.017 3.983 20 C -0.230 4.230 21 S 0.200 5.800 22 C 0.033 3.967 23 C -0.021 4.021 24 C -0.148 4.148 25 C -0.148 4.148 26 N -0.441 5.441 27 H 0.025 0.975 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.029 0.971 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.253 0.747 35 H 0.056 0.944 36 H 0.039 0.961 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.406 0.594 40 H 0.189 0.811 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 17.230 -18.262 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.375 4.375 7 H 0.076 0.924 8 C -0.177 4.177 9 N -0.534 5.534 10 Si 0.728 3.272 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.206 1.206 14 C 0.010 3.990 15 C -0.031 4.031 16 N -0.352 5.352 17 C 0.368 3.632 18 O -0.418 6.418 19 C -0.118 4.118 20 C -0.372 4.372 21 S 0.457 5.543 22 C -0.247 4.247 23 C -0.043 4.043 24 C -0.207 4.207 25 C -0.206 4.206 26 N -0.156 5.156 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.241 0.759 40 H 0.206 0.794 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.903 17.078 -18.483 25.181 hybrid contribution -0.740 -1.132 0.878 1.612 sum -1.643 15.946 -17.605 23.810 Atomic orbital electron populations 1.22635 0.84397 1.01416 0.98386 1.88243 1.16406 1.27383 1.94787 1.23462 0.98680 0.84334 0.96846 1.21160 0.87892 0.96557 0.93359 1.43583 1.74081 1.02377 1.08932 1.18794 1.40860 0.80735 0.97112 0.92435 1.24881 0.96805 0.97678 0.98294 1.69966 1.36154 1.36808 1.10435 0.86457 0.79502 0.84768 0.76480 1.21230 1.22024 1.20614 1.20995 0.92690 0.94859 0.90436 1.22556 1.00807 0.93669 0.86054 1.45953 1.12060 1.51455 1.25778 1.17088 0.85473 0.79588 0.81072 1.90814 1.18176 1.57064 1.75739 1.20576 0.88057 1.03833 0.99333 1.26610 1.06875 1.04353 0.99323 1.82686 1.00213 1.44768 1.26585 1.27198 1.01033 1.01047 0.95378 1.19851 0.90072 0.95434 0.98896 1.21943 1.02209 1.02038 0.94484 1.21942 1.02852 0.93132 1.02723 1.66941 1.19577 1.11056 1.18035 0.95641 0.95216 0.90819 0.95884 0.95319 0.87480 0.94100 0.93707 0.92570 0.94228 0.92181 0.91372 0.75917 0.79423 0.87728 0.92229 0.90989 0.91805 0.91849 0.90990 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -8.19 9.97 -35.23 -0.35 -8.54 16 3 C 0.05 0.98 6.28 37.16 0.23 1.21 16 4 C 0.14 3.21 5.83 -4.04 -0.02 3.19 16 5 N -0.57 -14.04 2.45 -173.24 -0.42 -14.46 16 6 C -0.25 -6.78 8.75 -15.06 -0.13 -6.92 16 7 H 0.06 1.62 7.94 -52.49 -0.42 1.20 16 8 C 0.02 0.65 4.95 -17.43 -0.09 0.56 16 9 N -0.89 -25.82 11.37 55.49 0.63 -25.19 16 10 Si 0.90 22.72 29.62 -169.99 -5.03 17.69 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.14 2.83 5.82 -4.04 -0.02 2.81 16 15 C 0.09 1.83 6.00 -4.04 -0.02 1.81 16 16 N -0.70 -11.77 5.55 -61.43 -0.34 -12.11 16 17 C 0.59 10.15 7.80 -12.59 -0.10 10.05 16 18 O -0.54 -11.00 16.71 5.24 0.09 -10.91 16 19 C 0.02 0.24 6.70 -84.53 -0.57 -0.33 16 20 C -0.23 -2.67 10.62 29.65 0.31 -2.36 16 21 S 0.20 1.63 22.22 -107.50 -2.39 -0.76 16 22 C 0.03 0.32 6.00 -13.61 -0.08 0.24 16 23 C -0.02 -0.14 3.34 -91.77 -0.31 -0.45 16 24 C -0.15 -0.79 9.09 37.16 0.34 -0.46 16 25 C -0.15 -0.77 9.09 37.16 0.34 -0.44 16 26 N -0.44 -5.64 10.12 -8.51 -0.09 -5.73 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.60 6.46 -51.93 -0.34 0.26 16 32 H 0.11 2.89 5.38 -51.93 -0.28 2.61 16 33 H 0.04 0.87 7.84 -51.93 -0.41 0.46 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.06 1.16 8.04 -51.93 -0.42 0.75 16 36 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 37 H 0.06 1.22 6.46 -51.93 -0.34 0.89 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.41 6.05 7.99 -40.82 -0.33 5.73 16 40 H 0.19 2.03 8.03 -52.49 -0.42 1.61 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.28 7.91 -51.93 -0.41 -0.13 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 LS Contribution 402.17 15.07 6.06 6.06 Total: -1.00 -33.14 402.17 -8.39 -41.53 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.53 Total: 1.84 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 0.99 Total: 10.58 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.22 Total: -57.49 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.26 Total: -19.45 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.39 Total: -0.76 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.14 -8.39 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284667675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.664 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds