Wall clock time and date at job start Sat Apr 11 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30499 * 125.64842 * 2 1 4 4 C 1.34131 * 109.25627 * 180.29203 * 3 2 1 5 5 C 1.34672 * 108.01801 * 359.72801 * 4 3 2 6 6 N 1.35042 * 125.64916 * 179.82881 * 2 1 3 7 7 C 1.46498 * 126.39768 * 359.97438 * 6 2 1 8 8 C 1.53004 * 109.47400 * 84.71533 * 7 6 2 9 9 C 1.53002 * 109.46780 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46849 * 179.97438 * 9 8 7 11 11 N 1.46489 * 109.47273 * 179.97438 * 10 9 8 12 12 S 1.65602 * 119.99977 * 164.99737 * 11 10 9 13 13 O 1.42104 * 104.27680 * 181.07217 * 12 11 10 14 14 O 1.42091 * 104.28009 * 308.93266 * 12 11 10 15 15 C 1.81396 * 104.44615 * 65.00763 * 12 11 10 16 16 C 1.53008 * 109.47233 * 173.81007 * 15 12 11 17 17 C 1.50697 * 115.54852 * 65.19167 * 16 15 12 18 18 H 1.08004 * 120.00187 * 264.78639 * 17 16 15 19 19 C 1.37887 * 119.99809 * 84.78470 * 17 16 15 20 20 N 1.31509 * 120.00120 * 352.23494 * 19 17 16 21 21 Si 1.86796 * 119.99608 * 172.23265 * 19 17 16 22 22 H 1.48505 * 109.47612 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47397 * 120.00460 * 21 19 17 24 24 H 1.48504 * 109.47243 * 240.00167 * 21 19 17 25 25 C 1.52993 * 117.49769 * 279.52468 * 16 15 12 26 26 C 1.52992 * 117.49791 * 210.86301 * 16 15 12 27 27 H 1.09003 * 109.47390 * 270.16850 * 1 2 3 28 28 H 1.08997 * 109.47413 * 30.17572 * 1 2 3 29 29 H 1.09005 * 109.47413 * 150.17144 * 1 2 3 30 30 H 1.07993 * 125.98871 * 179.72605 * 4 3 2 31 31 H 1.07995 * 126.59234 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47140 * 324.71073 * 7 6 2 33 33 H 1.09004 * 109.46945 * 204.71484 * 7 6 2 34 34 H 1.08995 * 109.47350 * 59.99668 * 8 7 6 35 35 H 1.08996 * 109.46437 * 299.99774 * 8 7 6 36 36 H 1.08997 * 109.47023 * 299.99474 * 9 8 7 37 37 H 1.09004 * 109.47355 * 59.99919 * 9 8 7 38 38 H 1.08997 * 109.47502 * 300.00474 * 10 9 8 39 39 H 1.09004 * 109.46891 * 60.00022 * 10 9 8 40 40 H 0.97004 * 120.00278 * 345.00944 * 11 10 9 41 41 H 1.09005 * 109.47081 * 293.80819 * 15 12 11 42 42 H 1.09007 * 109.47662 * 53.80983 * 15 12 11 43 43 H 0.97003 * 120.00040 * 185.02063 * 20 19 17 44 44 H 1.09001 * 117.50151 * 359.97438 * 25 16 15 45 45 H 1.09001 * 117.50125 * 145.02149 * 25 16 15 46 46 H 1.09010 * 117.50011 * 214.97914 * 26 16 15 47 47 H 1.09003 * 117.50659 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 6 3.5926 -0.6643 -0.0045 6 7 2.2941 -1.0973 0.0033 7 6 1.8425 -2.4910 0.0080 8 6 1.5584 -2.9399 -1.4269 9 6 1.0861 -4.3953 -1.4217 10 6 0.8014 -4.8440 -2.8565 11 7 0.3499 -6.2376 -2.8517 12 16 -0.3795 -6.8762 -4.1943 13 8 -0.6968 -8.2098 -3.8199 14 8 -1.4014 -5.9427 -4.5156 15 6 0.9168 -6.8628 -5.4631 16 6 0.4094 -7.5754 -6.7184 17 6 -0.7399 -6.9054 -7.4263 18 1 -1.7545 -7.2123 -7.2193 19 6 -0.4961 -5.9004 -8.3384 20 7 0.7204 -5.4213 -8.4795 21 14 -1.8940 -5.2196 -9.3737 22 1 -3.1550 -5.9233 -9.0272 23 1 -2.0471 -3.7672 -9.1051 24 1 -1.5912 -5.4276 -10.8126 25 6 0.4496 -9.1048 -6.7275 26 6 1.4397 -8.3077 -7.5803 27 1 -0.3634 0.0030 1.0277 28 1 -0.3634 0.8884 -0.5165 29 1 -0.3634 -0.8915 -0.5112 30 1 4.4097 1.3411 -0.0122 31 1 4.4776 -1.2832 -0.0088 32 1 0.9328 -2.5761 0.6022 33 1 2.6188 -3.1230 0.4394 34 1 2.4681 -2.8548 -2.0211 35 1 0.7821 -2.3080 -1.8582 36 1 1.8621 -5.0275 -0.9902 37 1 0.1762 -4.4800 -0.8275 38 1 0.0254 -4.2117 -3.2878 39 1 1.7111 -4.7593 -3.4510 40 1 0.4779 -6.7863 -2.0621 41 1 1.1738 -5.8324 -5.7091 42 1 1.8005 -7.3774 -5.0854 43 1 0.8791 -4.6661 -9.0671 44 1 0.8380 -9.6034 -5.8394 45 1 -0.3550 -9.6264 -7.2459 46 1 1.2862 -8.3051 -8.6595 47 1 2.4793 -8.2815 -7.2534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309220408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:19 Heat of formation + Delta-G solvation = -3.314631 kcal Electronic energy + Delta-G solvation = -27369.821475 eV Core-core repulsion = 23488.209349 eV Total energy + Delta-G solvation = -3881.612126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.31105 -37.09522 -36.78752 -36.26047 -35.16183 -34.83332 -32.07926 -32.04566 -31.91124 -28.21137 -27.90575 -26.95592 -25.48856 -23.78743 -21.80149 -21.58843 -21.24913 -19.93732 -19.73018 -18.67486 -17.37584 -16.88349 -16.51851 -16.18759 -15.99623 -15.54789 -15.14682 -14.76835 -14.66643 -14.34344 -14.12713 -13.82576 -13.75123 -13.35737 -13.26282 -13.15738 -12.73187 -12.64396 -12.45649 -12.16381 -11.98531 -11.85129 -11.70347 -11.34363 -11.23946 -11.12252 -11.09416 -11.03421 -10.97335 -10.60314 -10.48933 -10.16234 -10.15465 -9.82229 -9.75877 -9.27979 -8.98811 -8.60557 -8.56220 -8.13173 -6.17545 -4.27974 1.02269 1.80367 2.49375 2.94969 3.26299 3.34475 3.39934 3.41509 4.19733 4.24917 4.30891 4.34632 4.50004 4.50534 4.71782 4.75635 4.93051 4.95121 5.03956 5.06413 5.11572 5.18292 5.19756 5.24715 5.37291 5.40028 5.49009 5.51584 5.61816 5.68971 5.83415 5.85879 5.93240 6.07681 6.11240 6.22707 6.33142 6.55109 6.57090 6.68538 6.94615 6.95292 7.16287 7.23047 7.35605 7.77375 7.90447 8.16908 8.78034 9.43449 10.90118 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.002523 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.954307 B =11097.252430 C =12018.169683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.206 3.794 3 N -0.495 5.495 4 C -0.030 4.030 5 C -0.059 4.059 6 N -0.455 5.455 7 C 0.104 3.896 8 C -0.137 4.137 9 C -0.121 4.121 10 C 0.116 3.884 11 N -1.135 6.135 12 S 2.607 3.393 13 O -0.974 6.974 14 O -0.950 6.950 15 C -0.554 4.554 16 C 0.043 3.957 17 C -0.516 4.516 18 H 0.069 0.931 19 C 0.082 3.918 20 N -0.874 5.874 21 Si 0.892 3.108 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.282 1.282 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.408 0.592 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.263 0.737 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 5.232 17.719 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 N -0.215 5.215 4 C -0.178 4.178 5 C -0.192 4.192 6 N -0.138 5.138 7 C -0.019 4.019 8 C -0.176 4.176 9 C -0.161 4.161 10 C -0.011 4.011 11 N -0.891 5.891 12 S 2.704 3.296 13 O -0.965 6.965 14 O -0.940 6.940 15 C -0.687 4.687 16 C 0.040 3.960 17 C -0.553 4.553 18 H 0.087 0.913 19 C -0.123 4.123 20 N -0.510 5.510 21 Si 0.719 3.281 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.208 1.208 25 C -0.245 4.245 26 C -0.181 4.181 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.185 0.815 31 H 0.190 0.810 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.241 0.759 41 H 0.151 0.849 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.877 5.843 17.400 18.992 hybrid contribution 0.781 -0.448 -0.471 1.016 sum 5.658 5.396 16.929 18.647 Atomic orbital electron populations 1.20231 0.84989 1.04370 1.03434 1.23332 0.95758 0.81393 1.05148 1.70249 1.02330 1.28429 1.20465 1.22284 0.94793 0.92839 1.07894 1.22709 0.87106 0.96910 1.12443 1.45474 1.06500 1.07433 1.54389 1.21956 1.01991 0.79096 0.98861 1.21952 1.03287 0.96896 0.95505 1.21684 1.02204 0.94973 0.97231 1.21216 1.00277 0.82272 0.97334 1.55990 1.80861 1.19977 1.32294 1.05128 0.76654 0.73588 0.74180 1.93507 1.83386 1.37687 1.81917 1.93532 1.53546 1.63419 1.83474 1.29975 1.14522 1.10780 1.13403 1.18284 0.97962 0.87775 0.91929 1.20573 0.91392 1.20034 1.23294 0.91275 1.24958 0.95610 0.95809 0.95959 1.69981 1.19964 1.23595 1.37455 0.86515 0.82683 0.79059 0.79818 1.19209 1.20611 1.20832 1.23198 1.03300 0.95933 1.02103 1.22554 0.93303 1.04287 0.97922 0.90289 0.89091 0.90542 0.81455 0.80978 0.88820 0.88787 0.90482 0.90396 0.90912 0.90645 0.89976 0.91762 0.75929 0.84916 0.88295 0.92765 0.90692 0.89503 0.89575 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.04 36.01 0.36 -0.17 16 2 C 0.21 2.17 7.90 -155.42 -1.23 0.95 16 3 N -0.50 -6.33 11.25 -10.82 -0.12 -6.45 16 4 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 5 C -0.06 -0.53 11.58 -16.56 -0.19 -0.72 16 6 N -0.45 -4.04 2.75 -113.90 -0.31 -4.35 16 7 C 0.10 0.62 5.68 -4.04 -0.02 0.60 16 8 C -0.14 -0.96 5.54 -26.73 -0.15 -1.11 16 9 C -0.12 -0.89 5.36 -26.73 -0.14 -1.04 16 10 C 0.12 1.31 6.13 -4.05 -0.02 1.29 16 11 N -1.13 -15.06 5.88 -10.62 -0.06 -15.12 16 12 S 2.61 50.05 5.19 -107.50 -0.56 49.49 16 13 O -0.97 -20.60 18.08 -57.54 -1.04 -21.64 16 14 O -0.95 -21.78 17.17 -57.54 -0.99 -22.77 16 15 C -0.55 -11.16 5.93 37.16 0.22 -10.94 16 16 C 0.04 1.02 1.32 -155.67 -0.21 0.82 16 17 C -0.52 -13.90 8.18 -34.44 -0.28 -14.18 16 18 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 19 C 0.08 2.20 5.38 -17.82 -0.10 2.10 16 20 N -0.87 -23.66 12.98 55.43 0.72 -22.94 16 21 Si 0.89 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.21 -4.49 9.96 -26.70 -0.27 -4.75 16 26 C -0.14 -3.17 9.49 -26.70 -0.25 -3.42 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.47 7.34 -51.93 -0.38 0.09 16 30 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.09 0.44 7.94 -51.93 -0.41 0.03 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.62 7.63 -51.93 -0.40 0.22 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.41 4.36 8.62 -34.47 -0.30 4.06 16 41 H 0.13 2.77 8.14 -51.92 -0.42 2.35 16 42 H 0.10 1.67 8.09 -51.92 -0.42 1.25 16 43 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 44 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 45 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 46 H 0.09 2.04 8.14 -51.92 -0.42 1.62 16 47 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -35.44 405.80 -11.53 -46.97 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.77 Total: 5.66 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -2.49 Total: -31.12 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.22 Total: -48.87 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -2.03 Total: -44.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 50.05 SS G_CDS: -0.56 Total: 49.49 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.44 -11.53 -46.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309220408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.659 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds