Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46894 * 2 1 4 4 C 1.50694 * 109.46817 * 120.00006 * 2 1 3 5 5 O 1.34758 * 126.44447 * 300.17686 * 4 2 1 6 6 C 1.33965 * 107.75571 * 180.26909 * 5 4 2 7 7 N 1.30257 * 108.75920 * 359.74095 * 6 5 4 8 8 C 1.34326 * 126.44554 * 120.00117 * 4 2 1 9 9 C 1.50706 * 126.16334 * 359.97438 * 8 4 2 10 10 N 1.46902 * 109.46577 * 269.71214 * 9 8 4 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47234 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47053 * 180.02562 * 12 11 10 14 14 C 1.46502 * 120.00156 * 269.99914 * 13 12 11 15 15 C 1.34774 * 120.00393 * 90.00086 * 13 12 11 16 16 O 1.21283 * 119.99650 * 359.97438 * 15 13 12 17 17 C 1.50695 * 120.00312 * 180.02562 * 15 13 12 18 18 S 1.81005 * 109.47026 * 180.02562 * 17 15 13 19 19 C 1.76203 * 99.99964 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99769 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00111 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99979 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99881 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 90.00266 * 23 21 19 25 25 H 1.48500 * 109.47142 * 209.99812 * 23 21 19 26 26 H 1.48501 * 109.47393 * 329.99743 * 23 21 19 27 27 H 1.09002 * 109.47409 * 300.00392 * 1 2 3 28 28 H 1.09005 * 109.47276 * 60.00297 * 1 2 3 29 29 H 1.08997 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46686 * 239.99820 * 2 1 3 31 31 H 1.08993 * 109.47142 * 60.00108 * 3 2 1 32 32 H 1.08998 * 109.46818 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46843 * 299.99772 * 3 2 1 34 34 H 1.08001 * 125.61858 * 179.70610 * 6 5 4 35 35 H 1.09000 * 109.47318 * 29.70721 * 9 8 4 36 36 H 1.09000 * 109.47161 * 149.71352 * 9 8 4 37 37 H 1.00898 * 110.99915 * 56.05080 * 10 9 8 38 38 H 1.09002 * 109.47091 * 300.00139 * 11 10 9 39 39 H 1.09001 * 109.46854 * 60.00166 * 11 10 9 40 40 H 1.09002 * 109.47089 * 300.00010 * 12 11 10 41 41 H 1.09001 * 109.47170 * 60.00230 * 12 11 10 42 42 H 1.09005 * 109.47094 * 90.00166 * 14 13 12 43 43 H 1.08999 * 109.47722 * 210.00240 * 14 13 12 44 44 H 1.09008 * 109.46992 * 330.00242 * 14 13 12 45 45 H 1.09006 * 109.47209 * 299.99255 * 17 15 13 46 46 H 1.08998 * 109.47461 * 59.99893 * 17 15 13 47 47 H 0.97000 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.7853 -0.3670 2.5099 6 6 2.4166 -1.2472 3.2983 7 7 3.0329 -2.1151 2.5476 8 6 2.8076 -1.8069 1.2582 9 6 3.3351 -2.5537 0.0601 10 7 2.3787 -3.6004 -0.3243 11 6 2.8604 -4.3504 -1.4920 12 6 1.8398 -5.4287 -1.8621 13 7 2.3205 -6.1770 -3.0261 14 6 1.9735 -5.7312 -4.3779 15 6 3.0819 -7.2756 -2.8536 16 8 3.3695 -7.6444 -1.7346 17 6 3.5768 -8.0451 -4.0511 18 16 4.5639 -9.4568 -3.4953 19 6 5.0000 -10.1571 -5.0522 20 1 4.6562 -9.6968 -5.9667 21 6 5.7854 -11.3004 -5.1034 22 7 6.1108 -11.8238 -6.2665 23 14 6.3807 -12.0961 -3.5217 24 1 5.3856 -13.1006 -3.0679 25 1 7.6841 -12.7652 -3.7642 26 1 6.5459 -11.0552 -2.4755 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.4152 -1.2382 4.3782 35 1 3.4682 -1.8604 -0.7705 36 1 4.2929 -3.0104 0.3093 37 1 1.4650 -3.2092 -0.4981 38 1 2.9899 -3.6694 -2.3332 39 1 3.8150 -4.8196 -1.2539 40 1 1.7098 -6.1098 -1.0211 41 1 0.8854 -4.9592 -2.1003 42 1 2.7338 -5.0381 -4.7382 43 1 1.9232 -6.5932 -5.0431 44 1 1.0054 -5.2306 -4.3580 45 1 2.7255 -8.4031 -4.6302 46 1 4.1912 -7.3939 -4.6729 47 1 6.6600 -12.6226 -6.3022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317568206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = -15.867070 kcal Electronic energy + Delta-G solvation = -26536.863577 eV Core-core repulsion = 22654.707136 eV Total energy + Delta-G solvation = -3882.156441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.70955 -39.60455 -37.24108 -36.16499 -35.50796 -34.54893 -32.42704 -31.28453 -29.77579 -28.21060 -27.76391 -26.63125 -25.63137 -25.00633 -23.86602 -22.48728 -21.75076 -20.55527 -19.27161 -17.67565 -17.58753 -16.98030 -16.78131 -16.43645 -16.03415 -15.58450 -15.48153 -15.14719 -14.96487 -14.55355 -14.33631 -14.23121 -13.73530 -13.66918 -13.36355 -13.26742 -12.92706 -12.78149 -12.77090 -12.54510 -12.30386 -12.26299 -12.04016 -11.84743 -11.83332 -11.61205 -11.45905 -11.26002 -11.16028 -10.99076 -10.69938 -10.57707 -9.84280 -9.47461 -9.12481 -8.98982 -8.77800 -8.59563 -8.47079 -6.90513 -6.27892 -3.99453 1.09092 2.30413 2.38639 2.71605 2.94607 3.18387 3.35021 3.52870 3.59111 3.77465 4.04818 4.13083 4.27803 4.34664 4.46838 4.52051 4.60318 4.69267 4.85163 4.91854 5.02728 5.04695 5.07099 5.11232 5.11367 5.22102 5.22514 5.25603 5.31132 5.36625 5.37564 5.52208 5.61395 5.62484 5.63675 5.73161 5.78144 5.82266 5.90924 5.95772 6.01419 6.48977 6.68075 7.03115 7.42848 7.43357 7.95129 8.42140 8.45225 9.18508 10.81233 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.001856 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.279887 B =15079.680430 C =15879.945620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.010 4.010 3 C -0.149 4.149 4 C -0.033 4.033 5 O -0.202 6.202 6 C 0.164 3.836 7 N -0.466 5.466 8 C -0.004 4.004 9 C 0.142 3.858 10 N -0.677 5.677 11 C 0.046 3.954 12 C 0.122 3.878 13 N -0.623 5.623 14 C 0.079 3.921 15 C 0.530 3.470 16 O -0.511 6.511 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.249 0.751 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.337 0.663 38 H 0.031 0.969 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.991 29.360 11.353 34.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 C -0.206 4.206 4 C -0.087 4.087 5 O -0.088 6.088 6 C -0.062 4.062 7 N -0.194 5.194 8 C -0.124 4.124 9 C 0.012 3.988 10 N -0.309 5.309 11 C -0.084 4.084 12 C -0.002 4.002 13 N -0.360 5.360 14 C -0.064 4.064 15 C 0.318 3.682 16 O -0.385 6.385 17 C -0.271 4.271 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.265 0.735 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.155 0.845 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.879 27.725 13.592 33.084 hybrid contribution -0.483 1.110 -1.659 2.054 sum -12.363 28.836 11.933 33.567 Atomic orbital electron populations 1.21884 0.93142 1.02783 1.02824 1.19767 0.96734 0.96067 0.90284 1.21877 1.01597 0.94353 1.02820 1.23178 1.02639 0.98739 0.84149 1.84402 1.58977 1.49135 1.16325 1.28061 0.93336 0.85900 0.98953 1.70372 1.21640 1.25484 1.01931 1.21294 1.01843 0.96012 0.93228 1.20122 0.96636 0.91456 0.90549 1.60266 1.05021 1.27371 1.38209 1.22362 1.00423 0.95398 0.90260 1.21270 0.95370 0.94057 0.89516 1.47780 1.53527 1.27852 1.06809 1.21815 1.00401 1.00955 0.83255 1.20339 0.77369 0.79666 0.90866 1.90719 1.55323 1.66905 1.25549 1.23314 1.03671 1.01342 0.98797 1.84828 1.64244 1.28470 1.14133 1.22309 1.38249 1.15016 0.91251 0.89415 1.24713 0.94406 0.95578 0.96629 1.69940 1.36170 1.21535 1.24065 0.86735 0.79121 0.81631 0.84382 1.19199 1.19961 1.15884 0.91980 0.91336 0.91967 0.88283 0.91984 0.92140 0.91328 0.73507 0.93506 0.88889 0.84548 0.95037 0.89928 0.88840 0.91043 0.92735 0.90426 0.91341 0.88544 0.88548 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.18 37.16 0.34 -0.35 16 2 C -0.01 -0.05 3.27 -91.77 -0.30 -0.35 16 3 C -0.15 -0.70 9.18 37.16 0.34 -0.36 16 4 C -0.03 -0.27 5.89 -35.69 -0.21 -0.48 16 5 O -0.20 -1.71 10.78 5.35 0.06 -1.65 16 6 C 0.16 1.31 13.23 52.09 0.69 2.00 16 7 N -0.47 -5.32 11.29 -11.18 -0.13 -5.45 16 8 C 0.00 -0.04 6.62 -82.81 -0.55 -0.59 16 9 C 0.14 1.36 5.88 -4.97 -0.03 1.33 16 10 N -0.68 -6.78 6.49 -115.05 -0.75 -7.52 16 11 C 0.05 0.49 6.01 -3.82 -0.02 0.47 16 12 C 0.12 1.39 5.71 -4.04 -0.02 1.37 16 13 N -0.62 -8.22 2.87 -181.57 -0.52 -8.75 16 14 C 0.08 0.74 10.28 59.85 0.62 1.36 16 15 C 0.53 9.64 7.69 -10.99 -0.08 9.56 16 16 O -0.51 -11.29 15.44 5.55 0.09 -11.20 16 17 C -0.12 -2.36 4.71 36.00 0.17 -2.19 16 18 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 19 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16 23 Si 0.86 21.99 27.74 -169.99 -4.71 17.28 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.46 6.81 -51.93 -0.35 0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.25 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.05 0.35 7.14 -51.93 -0.37 -0.02 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.34 2.73 8.72 -39.29 -0.34 2.39 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.33 7.42 -51.93 -0.39 0.94 16 41 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 44 H 0.07 0.47 7.89 -51.92 -0.41 0.06 16 45 H 0.10 1.75 7.40 -51.91 -0.38 1.36 16 46 H 0.10 1.75 8.11 -51.92 -0.42 1.33 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 404.92 15.07 6.10 6.10 Total: -1.00 -36.76 404.92 -7.57 -44.33 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.64 Total: -1.38 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 1.15 Total: -0.26 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.62 Total: -47.55 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.14 Total: -12.85 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.76 -7.57 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317568206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.463 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds