Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46894 * 2 1 4 4 C 1.50694 * 109.46817 * 120.00006 * 2 1 3 5 5 O 1.34758 * 126.44447 * 300.17686 * 4 2 1 6 6 C 1.33965 * 107.75571 * 180.26909 * 5 4 2 7 7 N 1.30257 * 108.75920 * 359.74095 * 6 5 4 8 8 C 1.34326 * 126.44554 * 120.00117 * 4 2 1 9 9 C 1.50706 * 126.16334 * 359.97438 * 8 4 2 10 10 N 1.46902 * 109.46577 * 269.71214 * 9 8 4 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47234 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47053 * 180.02562 * 12 11 10 14 14 C 1.46502 * 120.00156 * 269.99914 * 13 12 11 15 15 C 1.34774 * 120.00393 * 90.00086 * 13 12 11 16 16 O 1.21283 * 119.99650 * 359.97438 * 15 13 12 17 17 C 1.50695 * 120.00312 * 180.02562 * 15 13 12 18 18 S 1.81005 * 109.47026 * 180.02562 * 17 15 13 19 19 C 1.76203 * 99.99964 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99769 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00111 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99979 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99881 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 90.00266 * 23 21 19 25 25 H 1.48500 * 109.47142 * 209.99812 * 23 21 19 26 26 H 1.48501 * 109.47393 * 329.99743 * 23 21 19 27 27 H 1.09002 * 109.47409 * 300.00392 * 1 2 3 28 28 H 1.09005 * 109.47276 * 60.00297 * 1 2 3 29 29 H 1.08997 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46686 * 239.99820 * 2 1 3 31 31 H 1.08993 * 109.47142 * 60.00108 * 3 2 1 32 32 H 1.08998 * 109.46818 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46843 * 299.99772 * 3 2 1 34 34 H 1.08001 * 125.61858 * 179.70610 * 6 5 4 35 35 H 1.09000 * 109.47318 * 29.70721 * 9 8 4 36 36 H 1.09000 * 109.47161 * 149.71352 * 9 8 4 37 37 H 1.00898 * 110.99915 * 56.05080 * 10 9 8 38 38 H 1.09002 * 109.47091 * 300.00139 * 11 10 9 39 39 H 1.09001 * 109.46854 * 60.00166 * 11 10 9 40 40 H 1.09002 * 109.47089 * 300.00010 * 12 11 10 41 41 H 1.09001 * 109.47170 * 60.00230 * 12 11 10 42 42 H 1.09005 * 109.47094 * 90.00166 * 14 13 12 43 43 H 1.08999 * 109.47722 * 210.00240 * 14 13 12 44 44 H 1.09008 * 109.46992 * 330.00242 * 14 13 12 45 45 H 1.09006 * 109.47209 * 299.99255 * 17 15 13 46 46 H 1.08998 * 109.47461 * 59.99893 * 17 15 13 47 47 H 0.97000 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.7853 -0.3670 2.5099 6 6 2.4166 -1.2472 3.2983 7 7 3.0329 -2.1151 2.5476 8 6 2.8076 -1.8069 1.2582 9 6 3.3351 -2.5537 0.0601 10 7 2.3787 -3.6004 -0.3243 11 6 2.8604 -4.3504 -1.4920 12 6 1.8398 -5.4287 -1.8621 13 7 2.3205 -6.1770 -3.0261 14 6 1.9735 -5.7312 -4.3779 15 6 3.0819 -7.2756 -2.8536 16 8 3.3695 -7.6444 -1.7346 17 6 3.5768 -8.0451 -4.0511 18 16 4.5639 -9.4568 -3.4953 19 6 5.0000 -10.1571 -5.0522 20 1 4.6562 -9.6968 -5.9667 21 6 5.7854 -11.3004 -5.1034 22 7 6.1108 -11.8238 -6.2665 23 14 6.3807 -12.0961 -3.5217 24 1 5.3856 -13.1006 -3.0679 25 1 7.6841 -12.7652 -3.7642 26 1 6.5459 -11.0552 -2.4755 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.4152 -1.2382 4.3782 35 1 3.4682 -1.8604 -0.7705 36 1 4.2929 -3.0104 0.3093 37 1 1.4650 -3.2092 -0.4981 38 1 2.9899 -3.6694 -2.3332 39 1 3.8150 -4.8196 -1.2539 40 1 1.7098 -6.1098 -1.0211 41 1 0.8854 -4.9592 -2.1003 42 1 2.7338 -5.0381 -4.7382 43 1 1.9232 -6.5932 -5.0431 44 1 1.0054 -5.2306 -4.3580 45 1 2.7255 -8.4031 -4.6302 46 1 4.1912 -7.3939 -4.6729 47 1 6.6600 -12.6226 -6.3022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317568206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = -44.390923 kcal Electronic energy + Delta-G solvation = -26538.100464 eV Core-core repulsion = 22654.707136 eV Total energy + Delta-G solvation = -3883.393328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.34435 -40.90764 -38.08332 -36.78016 -36.42470 -35.36561 -34.67301 -32.27330 -30.80709 -29.20164 -28.09771 -27.86034 -27.48811 -25.91132 -24.40769 -23.44002 -22.40843 -21.11156 -20.66037 -19.55685 -18.21060 -18.12927 -17.64817 -17.30917 -17.16924 -17.04177 -16.64967 -15.99544 -15.89597 -15.81168 -15.40782 -15.01407 -14.86816 -14.80378 -14.43352 -14.30601 -14.09102 -13.84514 -13.61587 -13.37247 -13.20814 -13.09575 -13.08182 -13.02727 -12.86581 -12.66679 -12.57351 -12.23530 -12.17753 -12.07364 -11.94619 -11.86458 -11.36353 -11.17456 -10.95643 -10.51799 -9.79787 -9.75103 -9.42336 -9.00735 -8.51928 -6.22623 0.48559 0.97718 1.30561 1.45295 1.51100 1.54478 1.65199 1.84021 2.08040 2.24736 2.68791 2.86269 3.16051 3.39549 3.57442 3.60691 3.78807 3.90783 4.01550 4.09383 4.10264 4.17137 4.26842 4.31693 4.40737 4.43119 4.48482 4.52065 4.69789 4.74147 4.77504 4.85527 4.89966 4.92141 4.94249 4.97990 4.99899 5.13464 5.29054 5.32739 5.34206 5.52084 5.70695 5.85339 6.11000 6.22820 6.38486 6.79463 6.93599 7.10196 8.60232 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.001856 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.279887 B =15079.680430 C =15879.945620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.010 4.010 3 C -0.147 4.147 4 C -0.024 4.024 5 O -0.207 6.207 6 C 0.173 3.827 7 N -0.517 5.517 8 C -0.032 4.032 9 C 0.147 3.853 10 N -0.687 5.687 11 C 0.058 3.942 12 C 0.122 3.878 13 N -0.608 5.608 14 C 0.069 3.931 15 C 0.529 3.471 16 O -0.561 6.561 17 C -0.104 4.104 18 S -0.183 6.183 19 C -0.526 4.526 20 H 0.064 0.936 21 C 0.047 3.953 22 N -0.915 5.915 23 Si 0.912 3.088 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.240 1.240 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.287 0.713 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.351 0.649 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.732 31.788 11.209 36.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 C -0.204 4.204 4 C -0.079 4.079 5 O -0.093 6.093 6 C -0.054 4.054 7 N -0.245 5.245 8 C -0.151 4.151 9 C 0.018 3.982 10 N -0.321 5.321 11 C -0.072 4.072 12 C -0.001 4.001 13 N -0.342 5.342 14 C -0.073 4.073 15 C 0.316 3.684 16 O -0.439 6.439 17 C -0.255 4.255 18 S 0.044 5.956 19 C -0.674 4.674 20 H 0.083 0.917 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.734 3.266 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.164 1.164 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.302 0.698 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.170 0.830 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.133 0.867 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.124 0.876 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.652 30.198 13.407 35.750 hybrid contribution -0.062 0.535 -1.636 1.722 sum -13.715 30.733 11.772 35.654 Atomic orbital electron populations 1.21868 0.92303 1.02739 1.03389 1.19949 0.97347 0.96301 0.89268 1.21866 1.01176 0.93909 1.03446 1.23636 1.01460 0.97978 0.84813 1.84428 1.59045 1.49257 1.16601 1.28919 0.91635 0.84622 1.00202 1.70338 1.23622 1.27469 1.03079 1.21411 1.03387 0.97224 0.93036 1.20036 0.95279 0.91514 0.91386 1.60140 1.05850 1.28028 1.38081 1.22130 0.98307 0.95488 0.91316 1.21398 0.97371 0.93374 0.87912 1.47768 1.51244 1.26020 1.09174 1.22168 1.02990 1.01438 0.80676 1.20104 0.78009 0.80894 0.89396 1.90704 1.57660 1.68691 1.26884 1.23280 1.03358 0.99055 0.99784 1.84808 1.66072 1.31768 1.12997 1.22433 1.37944 1.15131 0.91845 0.91731 1.25527 0.94673 0.96218 0.99473 1.70009 1.37111 1.22339 1.25831 0.85895 0.79348 0.80644 0.80666 1.18724 1.18259 1.16367 0.92710 0.89495 0.92298 0.87101 0.92569 0.92791 0.89506 0.69760 0.91115 0.91570 0.82965 0.92482 0.93832 0.92045 0.86678 0.91057 0.90793 0.87572 0.86857 0.86992 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.18 71.98 0.66 -0.32 16 2 C -0.01 -0.09 3.27 -11.54 -0.04 -0.12 16 3 C -0.15 -1.06 9.18 71.98 0.66 -0.40 16 4 C -0.02 -0.37 5.89 24.79 0.15 -0.23 16 5 O -0.21 -3.25 10.78 -3.77 -0.04 -3.29 16 6 C 0.17 2.60 13.23 130.48 1.73 4.32 16 7 N -0.52 -11.82 11.29 -304.07 -3.43 -15.26 16 8 C -0.03 -0.63 6.62 41.26 0.27 -0.36 16 9 C 0.15 2.76 5.88 85.56 0.50 3.27 16 10 N -0.69 -13.04 6.49 -517.90 -3.36 -16.41 16 11 C 0.06 1.16 6.01 86.30 0.52 1.68 16 12 C 0.12 2.55 5.71 86.38 0.49 3.04 16 13 N -0.61 -14.69 2.87 -846.75 -2.43 -17.13 16 14 C 0.07 1.02 10.28 127.77 1.31 2.34 16 15 C 0.53 18.91 7.69 87.66 0.67 19.59 16 16 O -0.56 -25.27 15.44 -3.04 -0.05 -25.32 16 17 C -0.10 -3.99 4.71 71.23 0.34 -3.65 16 18 S -0.18 -9.46 18.55 -56.49 -1.05 -10.51 16 19 C -0.53 -30.81 10.04 67.95 0.68 -30.13 16 20 H 0.06 3.95 8.03 -2.91 -0.02 3.93 16 21 C 0.05 2.76 5.50 84.86 0.47 3.22 16 22 N -0.91 -55.84 13.97 21.65 0.30 -55.54 16 23 Si 0.91 45.75 27.74 68.60 1.90 47.66 16 24 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.24 -12.12 6.74 99.48 0.67 -11.45 16 27 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.69 6.81 -2.39 -0.02 0.67 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.29 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.07 0.94 7.14 -2.39 -0.02 0.92 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.35 4.89 8.72 -89.70 -0.78 4.11 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.73 7.42 -2.39 -0.02 1.71 16 41 H 0.12 1.43 7.89 -2.39 -0.02 1.42 16 42 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.07 1.20 6.44 -2.39 -0.02 1.19 16 44 H 0.11 0.86 7.89 -2.38 -0.02 0.84 16 45 H 0.11 3.96 7.40 -2.39 -0.02 3.94 16 46 H 0.11 3.94 8.11 -2.40 -0.02 3.92 16 47 H 0.28 15.64 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -83.36 404.92 0.41 -82.96 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.15 Total: 10.58 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 8.42 Total: 2.26 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -8.93 Total: -104.33 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.09 Total: -28.61 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.66 kcal Atomic # 16 Polarization: -9.46 SS G_CDS: -1.05 Total: -10.51 kcal Total: -83.36 0.41 -82.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317568206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.567 kcal (2) G-P(sol) polarization free energy of solvation -83.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds