Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47149 * 2 1 4 4 N 1.30171 * 126.80615 * 275.97134 * 3 2 1 5 5 O 1.20917 * 111.60564 * 179.97438 * 4 3 2 6 6 C 1.34038 * 111.56827 * 359.76163 * 5 4 3 7 7 C 1.35447 * 106.44706 * 0.38431 * 6 5 4 8 8 C 1.50704 * 128.01012 * 179.90973 * 7 6 5 9 9 N 1.46899 * 109.46971 * 264.59035 * 8 7 6 10 10 C 1.46894 * 111.00044 * 288.23283 * 9 8 7 11 11 C 1.46903 * 110.99755 * 164.27765 * 9 8 7 12 12 C 1.52998 * 109.47056 * 287.86011 * 11 9 8 13 13 H 1.08998 * 109.46952 * 65.23956 * 12 11 9 14 14 C 1.53004 * 109.46810 * 185.23455 * 12 11 9 15 15 N 1.46497 * 109.47263 * 305.23316 * 12 11 9 16 16 C 1.34773 * 120.00137 * 152.76541 * 15 12 11 17 17 O 1.21283 * 119.99759 * 0.02562 * 16 15 12 18 18 C 1.50697 * 120.00232 * 179.97438 * 16 15 12 19 19 S 1.81001 * 109.47094 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99882 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99564 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99939 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99952 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99866 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47373 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46747 * 120.00930 * 24 22 20 27 27 H 1.48500 * 109.47188 * 240.00593 * 24 22 20 28 28 H 1.08998 * 109.46722 * 299.99664 * 1 2 3 29 29 H 1.09000 * 109.47404 * 59.99777 * 1 2 3 30 30 H 1.09004 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47091 * 240.00593 * 2 1 3 32 32 H 1.08998 * 109.47376 * 120.00770 * 2 1 3 33 33 H 1.08003 * 126.78108 * 180.28071 * 6 5 4 34 34 H 1.09006 * 109.46915 * 144.59162 * 8 7 6 35 35 H 1.08998 * 109.46997 * 24.59143 * 8 7 6 36 36 H 1.09001 * 109.47737 * 303.81406 * 10 9 8 37 37 H 1.09004 * 109.47318 * 63.81604 * 10 9 8 38 38 H 1.09003 * 109.47361 * 183.81872 * 10 9 8 39 39 H 1.09003 * 109.46793 * 167.85526 * 11 9 8 40 40 H 1.09008 * 109.46669 * 47.85867 * 11 9 8 41 41 H 1.08994 * 109.47013 * 179.97438 * 14 12 11 42 42 H 1.08992 * 109.47183 * 300.00441 * 14 12 11 43 43 H 1.09009 * 109.46855 * 60.00068 * 14 12 11 44 44 H 0.97007 * 120.00031 * 332.77442 * 15 12 11 45 45 H 1.08997 * 109.47142 * 300.00680 * 18 16 15 46 46 H 1.09000 * 109.46917 * 60.00655 * 18 16 15 47 47 H 0.96999 * 119.99535 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1901 2.1922 -1.0366 5 8 2.6097 3.2815 -0.7212 6 6 2.7846 3.3773 0.6042 7 6 2.4252 2.1802 1.1260 8 6 2.4353 1.7577 2.5726 9 7 3.6895 1.0523 2.8679 10 6 3.7065 -0.2761 2.2411 11 6 3.9093 0.9535 4.3170 12 6 4.2833 2.3298 4.8711 13 1 3.4385 3.0091 4.7569 14 6 4.6390 2.2032 6.3538 15 7 5.4359 2.8557 4.1355 16 6 5.6169 4.1869 4.0287 17 8 4.8257 4.9495 4.5419 18 6 6.8029 4.7279 3.2725 19 16 6.7673 6.5372 3.3087 20 6 8.2222 6.8904 2.3797 21 1 8.8227 6.0823 1.9887 22 6 8.5960 8.2071 2.1494 23 7 7.8638 9.1920 2.6256 24 14 10.1381 8.5816 1.1639 25 1 10.7783 7.3093 0.7440 26 1 9.7765 9.3741 -0.0389 27 1 11.0850 9.3594 2.0028 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.1432 4.2385 1.1486 34 1 1.5917 1.0942 2.7632 35 1 2.3555 2.6390 3.2091 36 1 2.8366 -0.8445 2.5703 37 1 3.6800 -0.1667 1.1569 38 1 4.6156 -0.8031 2.5310 39 1 4.7183 0.2502 4.5147 40 1 2.9970 0.6031 4.7998 41 1 4.9058 3.1835 6.7484 42 1 3.7815 1.8119 6.9010 43 1 5.4838 1.5237 6.4679 44 1 6.0688 2.2457 3.7252 45 1 7.7227 4.3735 3.7376 46 1 6.7624 4.3839 2.2390 47 1 8.1249 10.1122 2.4643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322117571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = 22.571378 kcal Electronic energy + Delta-G solvation = -27925.734003 eV Core-core repulsion = 24045.244379 eV Total energy + Delta-G solvation = -3880.489625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.95470 -39.55385 -38.13666 -35.86005 -34.58612 -32.58954 -32.39839 -31.37217 -31.14421 -28.49196 -27.93074 -27.27572 -25.45156 -24.66524 -23.45698 -21.69574 -20.98354 -20.82252 -20.08714 -17.82069 -17.66070 -17.47986 -16.43682 -16.25338 -15.80568 -15.64084 -14.91244 -14.77703 -14.76085 -14.59783 -14.52343 -14.02249 -13.68636 -13.27822 -13.16752 -12.98203 -12.91361 -12.77105 -12.56347 -12.36509 -12.27817 -12.08938 -11.90283 -11.83205 -11.68374 -11.41588 -11.04752 -10.98712 -10.96336 -10.82049 -10.72283 -10.03018 -9.76856 -9.51418 -9.30787 -9.04781 -8.77058 -8.64655 -8.19507 -6.46307 -6.19242 -3.88929 1.48943 2.06617 3.09715 3.18738 3.23798 3.25495 3.31041 3.36390 3.64123 3.84420 3.98013 4.23545 4.31330 4.53560 4.67002 4.70820 4.88075 4.93047 4.97369 4.99690 5.09793 5.13070 5.16295 5.19754 5.26221 5.29507 5.38566 5.41225 5.44317 5.55821 5.58078 5.59022 5.65123 5.71826 5.73292 5.82653 5.95752 5.97764 6.01363 6.13933 6.21801 6.61164 6.69513 6.83331 7.63092 7.86904 8.23006 8.38539 8.72846 9.26749 10.88188 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.003037 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.561988 B = 9217.270807 C =10928.694653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C 0.023 3.977 4 N -0.369 5.369 5 O 0.097 5.903 6 C -0.026 4.026 7 C -0.197 4.197 8 C 0.132 3.868 9 N -0.532 5.532 10 C 0.019 3.981 11 C 0.046 3.954 12 C 0.147 3.853 13 H 0.086 0.914 14 C -0.163 4.163 15 N -0.717 5.717 16 C 0.534 3.466 17 O -0.525 6.525 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.219 0.781 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.399 0.601 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.296 -23.033 1.079 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 C -0.137 4.137 4 N -0.074 5.074 5 O 0.034 5.966 6 C -0.108 4.108 7 C -0.202 4.202 8 C 0.004 3.996 9 N -0.255 5.255 10 C -0.129 4.129 11 C -0.082 4.082 12 C 0.041 3.959 13 H 0.104 0.896 14 C -0.222 4.222 15 N -0.370 5.370 16 C 0.320 3.680 17 O -0.400 6.400 18 C -0.303 4.303 19 S 0.165 5.835 20 C -0.681 4.681 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.235 0.765 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.233 0.767 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.456 -21.449 0.428 25.324 hybrid contribution 1.746 -1.386 -0.239 2.242 sum -11.711 -22.835 0.189 25.663 Atomic orbital electron populations 1.21723 0.94108 1.02095 1.02495 1.20160 0.96431 0.88698 1.03903 1.23412 1.02515 0.98907 0.88868 1.73825 1.16275 0.93037 1.24245 1.84848 1.60905 1.27169 1.23684 1.25995 1.00334 1.01130 0.83317 1.20957 1.08053 0.94177 0.97013 1.20292 0.90210 0.99052 0.90043 1.61857 1.34654 1.18534 1.10493 1.22644 1.00603 0.89008 1.00644 1.22507 1.01046 0.97409 0.87283 1.20847 0.90294 0.93978 0.90757 0.89568 1.22169 1.01504 1.03032 0.95530 1.45805 1.27819 1.06802 1.56586 1.20234 0.86496 0.81649 0.79595 1.90685 1.45457 1.57005 1.46902 1.23518 0.98251 1.06332 1.02215 1.85337 1.35214 0.91386 1.71516 1.22907 1.11170 0.94914 1.39128 0.90966 1.24981 0.97602 0.95185 0.95815 1.70028 1.37713 0.99419 1.43186 0.86141 0.81635 0.78452 0.79423 1.19627 1.20574 1.20620 0.92435 0.92326 0.91802 0.90205 0.89283 0.76475 0.93364 0.89051 0.95457 0.90802 0.91263 0.89976 0.93233 0.91383 0.92060 0.92501 0.76690 0.89535 0.89336 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.05 -0.44 5.74 -27.88 -0.16 -0.60 16 3 C 0.02 0.26 5.86 -82.10 -0.48 -0.23 16 4 N -0.37 -5.04 12.07 33.42 0.40 -4.63 16 5 O 0.10 1.34 11.20 17.18 0.19 1.53 16 6 C -0.03 -0.31 12.26 29.74 0.36 0.06 16 7 C -0.20 -2.16 5.39 -104.42 -0.56 -2.73 16 8 C 0.13 1.20 5.24 -4.97 -0.03 1.17 16 9 N -0.53 -4.52 4.38 -244.36 -1.07 -5.59 16 10 C 0.02 0.13 7.97 60.06 0.48 0.61 16 11 C 0.05 0.34 4.55 -3.82 -0.02 0.32 16 12 C 0.15 1.51 2.56 -67.93 -0.17 1.34 16 13 H 0.09 1.05 6.10 -51.93 -0.32 0.74 16 14 C -0.16 -1.57 9.51 37.16 0.35 -1.22 16 15 N -0.72 -8.91 4.77 -53.81 -0.26 -9.17 16 16 C 0.53 9.38 7.83 -10.99 -0.09 9.30 16 17 O -0.53 -11.16 15.49 5.56 0.09 -11.07 16 18 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.59 4.77 -51.93 -0.25 0.34 16 33 H 0.22 2.46 8.06 -52.48 -0.42 2.03 16 34 H 0.05 0.38 7.98 -51.93 -0.41 -0.04 16 35 H 0.09 0.90 6.39 -51.93 -0.33 0.57 16 36 H 0.03 0.16 7.32 -51.93 -0.38 -0.22 16 37 H 0.07 0.60 5.47 -51.93 -0.28 0.32 16 38 H 0.07 0.43 7.91 -51.93 -0.41 0.02 16 39 H 0.08 0.52 7.84 -51.93 -0.41 0.12 16 40 H 0.05 0.31 8.05 -51.92 -0.42 -0.11 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.40 4.25 8.63 -40.82 -0.35 3.90 16 45 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -34.35 398.45 -8.00 -42.35 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.33 Total: 1.56 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 0.48 Total: -8.26 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.19 Total: -44.74 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.28 Total: -9.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.35 -8.00 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322117571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.921 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds