Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47149 * 2 1 4 4 N 1.30171 * 126.80615 * 275.97134 * 3 2 1 5 5 O 1.20917 * 111.60564 * 179.97438 * 4 3 2 6 6 C 1.34038 * 111.56827 * 359.76163 * 5 4 3 7 7 C 1.35447 * 106.44706 * 0.38431 * 6 5 4 8 8 C 1.50704 * 128.01012 * 179.90973 * 7 6 5 9 9 N 1.46899 * 109.46971 * 264.59035 * 8 7 6 10 10 C 1.46894 * 111.00044 * 288.23283 * 9 8 7 11 11 C 1.46903 * 110.99755 * 164.27765 * 9 8 7 12 12 C 1.52998 * 109.47056 * 287.86011 * 11 9 8 13 13 H 1.08998 * 109.46952 * 65.23956 * 12 11 9 14 14 C 1.53004 * 109.46810 * 185.23455 * 12 11 9 15 15 N 1.46497 * 109.47263 * 305.23316 * 12 11 9 16 16 C 1.34773 * 120.00137 * 152.76541 * 15 12 11 17 17 O 1.21283 * 119.99759 * 0.02562 * 16 15 12 18 18 C 1.50697 * 120.00232 * 179.97438 * 16 15 12 19 19 S 1.81001 * 109.47094 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99882 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99564 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99939 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99952 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99866 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47373 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46747 * 120.00930 * 24 22 20 27 27 H 1.48500 * 109.47188 * 240.00593 * 24 22 20 28 28 H 1.08998 * 109.46722 * 299.99664 * 1 2 3 29 29 H 1.09000 * 109.47404 * 59.99777 * 1 2 3 30 30 H 1.09004 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47091 * 240.00593 * 2 1 3 32 32 H 1.08998 * 109.47376 * 120.00770 * 2 1 3 33 33 H 1.08003 * 126.78108 * 180.28071 * 6 5 4 34 34 H 1.09006 * 109.46915 * 144.59162 * 8 7 6 35 35 H 1.08998 * 109.46997 * 24.59143 * 8 7 6 36 36 H 1.09001 * 109.47737 * 303.81406 * 10 9 8 37 37 H 1.09004 * 109.47318 * 63.81604 * 10 9 8 38 38 H 1.09003 * 109.47361 * 183.81872 * 10 9 8 39 39 H 1.09003 * 109.46793 * 167.85526 * 11 9 8 40 40 H 1.09008 * 109.46669 * 47.85867 * 11 9 8 41 41 H 1.08994 * 109.47013 * 179.97438 * 14 12 11 42 42 H 1.08992 * 109.47183 * 300.00441 * 14 12 11 43 43 H 1.09009 * 109.46855 * 60.00068 * 14 12 11 44 44 H 0.97007 * 120.00031 * 332.77442 * 15 12 11 45 45 H 1.08997 * 109.47142 * 300.00680 * 18 16 15 46 46 H 1.09000 * 109.46917 * 60.00655 * 18 16 15 47 47 H 0.96999 * 119.99535 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1901 2.1922 -1.0366 5 8 2.6097 3.2815 -0.7212 6 6 2.7846 3.3773 0.6042 7 6 2.4252 2.1802 1.1260 8 6 2.4353 1.7577 2.5726 9 7 3.6895 1.0523 2.8679 10 6 3.7065 -0.2761 2.2411 11 6 3.9093 0.9535 4.3170 12 6 4.2833 2.3298 4.8711 13 1 3.4385 3.0091 4.7569 14 6 4.6390 2.2032 6.3538 15 7 5.4359 2.8557 4.1355 16 6 5.6169 4.1869 4.0287 17 8 4.8257 4.9495 4.5419 18 6 6.8029 4.7279 3.2725 19 16 6.7673 6.5372 3.3087 20 6 8.2222 6.8904 2.3797 21 1 8.8227 6.0823 1.9887 22 6 8.5960 8.2071 2.1494 23 7 7.8638 9.1920 2.6256 24 14 10.1381 8.5816 1.1639 25 1 10.7783 7.3093 0.7440 26 1 9.7765 9.3741 -0.0389 27 1 11.0850 9.3594 2.0028 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.1432 4.2385 1.1486 34 1 1.5917 1.0942 2.7632 35 1 2.3555 2.6390 3.2091 36 1 2.8366 -0.8445 2.5703 37 1 3.6800 -0.1667 1.1569 38 1 4.6156 -0.8031 2.5310 39 1 4.7183 0.2502 4.5147 40 1 2.9970 0.6031 4.7998 41 1 4.9058 3.1835 6.7484 42 1 3.7815 1.8119 6.9010 43 1 5.4838 1.5237 6.4679 44 1 6.0688 2.2457 3.7252 45 1 7.7227 4.3735 3.7376 46 1 6.7624 4.3839 2.2390 47 1 8.1249 10.1122 2.4643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322117571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = -1.517394 kcal Electronic energy + Delta-G solvation = -27926.778571 eV Core-core repulsion = 24045.244379 eV Total energy + Delta-G solvation = -3881.534192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.88870 -40.72597 -39.03903 -36.76565 -35.51909 -34.56307 -33.42652 -32.51436 -31.99993 -29.91135 -28.59982 -27.96348 -27.62972 -25.36113 -24.22148 -22.63965 -21.90589 -21.71657 -21.16916 -19.79596 -18.58376 -18.41805 -17.80630 -17.28677 -16.86388 -16.60054 -16.43614 -16.16443 -15.92444 -15.59670 -15.29949 -15.17936 -14.58981 -14.55334 -14.40418 -14.01001 -13.91573 -13.62972 -13.53423 -13.25699 -13.13264 -13.08136 -12.91046 -12.87620 -12.78117 -12.58428 -12.49913 -12.48128 -12.17871 -11.69721 -11.64921 -11.58311 -11.14122 -10.91297 -10.79172 -10.43901 -10.22911 -9.92188 -9.25769 -8.61711 -8.33145 -6.09241 0.53171 1.21464 1.30406 1.41167 1.49295 1.61119 1.77124 2.28374 2.32931 2.44509 3.00975 3.01750 3.20361 3.37368 3.51925 3.82839 3.91761 4.02222 4.10063 4.23822 4.29263 4.30591 4.32216 4.36302 4.45027 4.51569 4.57404 4.58768 4.65847 4.66574 4.78401 4.82443 4.84990 4.87077 4.93402 5.04787 5.11574 5.12765 5.15842 5.29824 5.34596 5.44020 5.67439 6.03863 6.12615 6.21880 6.69536 7.08872 7.28310 7.42321 8.76058 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.003037 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.561988 B = 9217.270807 C =10928.694653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.030 3.970 4 N -0.398 5.398 5 O 0.072 5.928 6 C -0.044 4.044 7 C -0.191 4.191 8 C 0.135 3.865 9 N -0.547 5.547 10 C 0.019 3.981 11 C 0.056 3.944 12 C 0.144 3.856 13 H 0.065 0.935 14 C -0.158 4.158 15 N -0.691 5.691 16 C 0.538 3.462 17 O -0.568 6.568 18 C -0.129 4.129 19 S -0.144 6.144 20 C -0.544 4.544 21 H 0.079 0.921 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.259 1.259 26 H -0.275 1.275 27 H -0.273 1.273 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.217 0.783 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.412 0.588 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.745 -26.678 1.416 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C -0.130 4.130 4 N -0.108 5.108 5 O 0.013 5.987 6 C -0.125 4.125 7 C -0.195 4.195 8 C 0.007 3.993 9 N -0.272 5.272 10 C -0.128 4.128 11 C -0.072 4.072 12 C 0.039 3.961 13 H 0.083 0.917 14 C -0.217 4.217 15 N -0.344 5.344 16 C 0.323 3.677 17 O -0.447 6.447 18 C -0.281 4.281 19 S 0.083 5.917 20 C -0.692 4.692 21 H 0.097 0.903 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.248 0.752 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.893 -25.137 0.772 28.261 hybrid contribution 1.503 -0.394 -0.290 1.581 sum -11.390 -25.531 0.483 27.961 Atomic orbital electron populations 1.21712 0.93271 1.03410 1.01714 1.20342 0.97023 0.86697 1.05040 1.23970 1.00876 0.99921 0.88196 1.73815 1.17868 0.93482 1.25610 1.84808 1.61890 1.27671 1.24380 1.26149 1.01260 1.01975 0.83165 1.21249 1.06788 0.93408 0.98067 1.20289 0.91504 0.99214 0.88263 1.61775 1.34307 1.19723 1.11359 1.22659 1.02188 0.88269 0.99705 1.22452 1.02807 0.95339 0.86565 1.21061 0.88394 0.95333 0.91294 0.91709 1.22109 1.03240 1.01558 0.94766 1.45597 1.28442 1.04906 1.55419 1.19851 0.85413 0.83154 0.79274 1.90677 1.46676 1.58471 1.48881 1.23358 1.00261 1.00726 1.03709 1.85469 1.35791 0.98543 1.71885 1.23222 1.11324 0.95530 1.39147 0.90331 1.26072 1.01211 0.94917 0.96859 1.70182 1.39849 0.99940 1.44712 0.84961 0.77037 0.78668 0.77641 1.18229 1.20005 1.19864 0.92370 0.93982 0.89423 0.89993 0.87173 0.76685 0.91324 0.90240 0.93511 0.92162 0.89973 0.87784 0.90963 0.94893 0.89647 0.90772 0.75156 0.87995 0.88055 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.03 16 2 C -0.05 -0.75 5.74 29.85 0.17 -0.58 16 3 C 0.03 0.66 5.86 43.58 0.26 0.92 16 4 N -0.40 -11.13 12.07 -49.57 -0.60 -11.73 16 5 O 0.07 2.09 11.20 71.66 0.80 2.89 16 6 C -0.04 -1.11 12.26 67.17 0.82 -0.28 16 7 C -0.19 -4.07 5.39 -19.73 -0.11 -4.17 16 8 C 0.14 2.19 5.24 85.56 0.45 2.64 16 9 N -0.55 -7.59 4.38 -927.02 -4.06 -11.66 16 10 C 0.02 0.19 7.97 127.69 1.02 1.21 16 11 C 0.06 0.61 4.55 86.30 0.39 1.00 16 12 C 0.14 2.66 2.56 44.99 0.12 2.78 16 13 H 0.06 1.54 6.10 -2.39 -0.01 1.52 16 14 C -0.16 -2.68 9.51 71.98 0.68 -2.00 16 15 N -0.69 -16.08 4.77 -442.55 -2.11 -18.20 16 16 C 0.54 18.91 7.83 87.66 0.69 19.60 16 17 O -0.57 -24.94 15.49 -3.04 -0.05 -24.99 16 18 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 19 S -0.14 -7.94 20.57 -56.49 -1.16 -9.10 16 20 C -0.54 -31.28 9.50 67.95 0.65 -30.64 16 21 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 24 Si 0.99 44.19 29.55 68.60 2.03 46.22 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.11 1.06 4.77 -2.39 -0.01 1.05 16 33 H 0.22 5.33 8.06 -2.91 -0.02 5.31 16 34 H 0.07 0.84 7.98 -2.38 -0.02 0.82 16 35 H 0.08 1.50 6.39 -2.39 -0.02 1.49 16 36 H 0.05 0.31 7.32 -2.39 -0.02 0.29 16 37 H 0.06 0.80 5.47 -2.39 -0.01 0.79 16 38 H 0.08 0.65 7.91 -2.39 -0.02 0.63 16 39 H 0.10 0.76 7.84 -2.39 -0.02 0.74 16 40 H 0.07 0.55 8.05 -2.38 -0.02 0.53 16 41 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.41 7.64 8.63 -92.70 -0.80 6.84 16 45 H 0.10 3.70 8.14 -2.40 -0.02 3.68 16 46 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 47 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -78.48 398.45 2.07 -76.41 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.18 Total: 19.90 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 6.75 Total: -13.94 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -6.49 Total: -97.38 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.76 Total: -22.10 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -78.48 2.07 -76.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322117571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.895 kcal (2) G-P(sol) polarization free energy of solvation -78.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds