Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47378 * 2 1 4 4 N 1.30178 * 126.80078 * 84.97974 * 3 2 1 5 5 O 1.20917 * 111.59918 * 179.97438 * 4 3 2 6 6 C 1.34034 * 111.57398 * 0.02562 * 5 4 3 7 7 C 1.35454 * 106.44666 * 359.74969 * 6 5 4 8 8 C 1.50694 * 128.01179 * 180.23757 * 7 6 5 9 9 N 1.46903 * 109.47361 * 105.02328 * 8 7 6 10 10 C 1.46903 * 110.99607 * 288.01817 * 9 8 7 11 11 C 1.46900 * 111.00103 * 164.06784 * 9 8 7 12 12 C 1.52997 * 109.46850 * 189.99729 * 11 9 8 13 13 H 1.09004 * 109.47202 * 294.99270 * 12 11 9 14 14 C 1.53005 * 109.46982 * 175.00061 * 12 11 9 15 15 N 1.46492 * 109.47420 * 55.00154 * 12 11 9 16 16 C 1.34773 * 120.00167 * 204.99813 * 15 12 11 17 17 O 1.21283 * 120.00013 * 359.97438 * 16 15 12 18 18 C 1.50701 * 120.00276 * 179.97438 * 16 15 12 19 19 S 1.80997 * 109.47429 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00136 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99822 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00353 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99765 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00278 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47187 * 90.00301 * 24 22 20 26 26 H 1.48498 * 109.47618 * 210.00367 * 24 22 20 27 27 H 1.48500 * 109.47582 * 330.00453 * 24 22 20 28 28 H 1.09003 * 109.46927 * 304.94109 * 1 2 3 29 29 H 1.09005 * 109.46693 * 64.93342 * 1 2 3 30 30 H 1.09000 * 109.47566 * 184.93582 * 1 2 3 31 31 H 1.08995 * 109.46919 * 239.99688 * 2 1 3 32 32 H 1.09003 * 109.46772 * 120.00224 * 2 1 3 33 33 H 1.08000 * 126.78178 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47174 * 225.01943 * 8 7 6 35 35 H 1.08997 * 109.47123 * 345.02069 * 8 7 6 36 36 H 1.08999 * 109.46918 * 64.10219 * 10 9 8 37 37 H 1.08998 * 109.47116 * 184.09607 * 10 9 8 38 38 H 1.08995 * 109.47593 * 304.10215 * 10 9 8 39 39 H 1.09000 * 109.47032 * 310.00102 * 11 9 8 40 40 H 1.09000 * 109.46876 * 69.99766 * 11 9 8 41 41 H 1.09001 * 109.47000 * 300.00207 * 14 12 11 42 42 H 1.09007 * 109.47191 * 60.00063 * 14 12 11 43 43 H 1.08997 * 109.47305 * 179.97438 * 14 12 11 44 44 H 0.97004 * 119.99856 * 25.00024 * 15 12 11 45 45 H 1.09004 * 109.47066 * 300.00147 * 18 16 15 46 46 H 1.08999 * 109.46976 * 59.99627 * 18 16 15 47 47 H 0.97000 * 120.00107 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2064 2.1864 1.0384 5 8 2.6220 3.2771 0.7226 6 6 2.7814 3.3785 -0.6044 7 6 2.4132 2.1845 -1.1273 8 6 2.4080 1.7674 -2.5753 9 7 3.5403 0.8667 -2.8296 10 6 4.8120 1.6019 -2.8123 11 6 3.3657 0.1467 -4.0981 12 6 4.4235 -0.9530 -4.2101 13 1 5.4133 -0.5004 -4.2693 14 6 4.1657 -1.7822 -5.4698 15 7 4.3528 -1.8204 -3.0317 16 6 5.4391 -2.5153 -2.6402 17 8 6.4752 -2.4229 -3.2639 18 6 5.3666 -3.4072 -1.4276 19 16 6.9731 -4.1978 -1.1631 20 6 6.6113 -5.1533 0.2725 21 1 5.6236 -5.1203 0.7082 22 6 7.5955 -5.9482 0.8433 23 7 8.7994 -5.9879 0.3125 24 14 7.2121 -6.9606 2.3656 25 1 6.7163 -8.2996 1.9576 26 1 8.4440 -7.1159 3.1801 27 1 6.1710 -6.2711 3.1694 28 1 -0.3633 0.5886 0.8424 29 1 -0.3633 0.4354 -0.9309 30 1 -0.3634 -1.0238 0.0884 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.1377 4.2405 -1.1489 34 1 1.4751 1.2510 -2.8014 35 1 2.4970 2.6505 -3.2081 36 1 4.9837 2.0073 -1.8152 37 1 5.6259 0.9261 -3.0747 38 1 4.7700 2.4176 -3.5339 39 1 2.3721 -0.3003 -4.1284 40 1 3.4762 0.8431 -4.9293 41 1 3.1758 -2.2348 -5.4107 42 1 4.2184 -1.1368 -6.3467 43 1 4.9195 -2.5654 -5.5499 44 1 3.5240 -1.8946 -2.5331 45 1 5.1063 -2.8109 -0.5531 46 1 4.6068 -4.1727 -1.5846 47 1 9.4871 -6.5438 0.7112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322117573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = 20.135433 kcal Electronic energy + Delta-G solvation = -27794.316805 eV Core-core repulsion = 23913.721550 eV Total energy + Delta-G solvation = -3880.595255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.10560 -39.54280 -38.06490 -35.85171 -34.72766 -32.54631 -32.38706 -31.28816 -31.19553 -28.47742 -28.00411 -27.20078 -25.44082 -24.70929 -23.54368 -21.41516 -21.17367 -20.94866 -20.11153 -17.81420 -17.76547 -17.54799 -16.48430 -16.23155 -15.91804 -15.47790 -15.29229 -14.76961 -14.70974 -14.46944 -14.38148 -14.02884 -13.65767 -13.34316 -13.13639 -13.01078 -12.88274 -12.76703 -12.57624 -12.35648 -12.16377 -11.97214 -11.87200 -11.77958 -11.65328 -11.50837 -11.03153 -11.00098 -10.98228 -10.86953 -10.71976 -10.03681 -9.76749 -9.71463 -9.28804 -9.02900 -8.75672 -8.67544 -8.17939 -6.44537 -6.17799 -3.87420 1.27945 2.01112 3.04871 3.10819 3.21739 3.25190 3.31042 3.36163 3.58559 3.83989 4.01562 4.24794 4.29299 4.44062 4.58750 4.76831 4.87740 4.98816 5.01695 5.07202 5.15919 5.17357 5.17629 5.19954 5.23296 5.26186 5.34490 5.40487 5.45831 5.47339 5.59019 5.69406 5.73722 5.77756 5.81554 5.85550 5.97563 6.03426 6.03927 6.15841 6.22810 6.62837 6.67209 6.84180 7.63669 7.88260 8.12446 8.39355 8.75207 9.27763 10.89666 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009832 B = 0.003061 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.178520 B = 9145.233064 C =10855.333578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.044 3.956 4 N -0.367 5.367 5 O 0.096 5.904 6 C -0.061 4.061 7 C -0.188 4.188 8 C 0.132 3.868 9 N -0.532 5.532 10 C 0.022 3.978 11 C 0.047 3.953 12 C 0.148 3.852 13 H 0.086 0.914 14 C -0.163 4.163 15 N -0.718 5.718 16 C 0.534 3.466 17 O -0.524 6.524 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.211 0.789 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.398 0.602 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.290 18.962 -8.854 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.115 4.115 4 N -0.072 5.072 5 O 0.032 5.968 6 C -0.143 4.143 7 C -0.192 4.192 8 C 0.004 3.996 9 N -0.256 5.256 10 C -0.126 4.126 11 C -0.081 4.081 12 C 0.042 3.958 13 H 0.104 0.896 14 C -0.222 4.222 15 N -0.371 5.371 16 C 0.320 3.680 17 O -0.399 6.399 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.504 5.504 24 Si 0.743 3.257 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.228 0.772 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.232 0.768 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.530 18.555 -8.188 26.164 hybrid contribution -1.685 -0.140 0.464 1.753 sum -18.215 18.415 -7.724 27.029 Atomic orbital electron populations 1.21718 0.94281 1.02360 1.01905 1.19968 0.95837 0.88219 1.04565 1.23451 1.01028 0.98993 0.88056 1.73866 1.16274 0.92875 1.24190 1.84834 1.61359 1.27508 1.23073 1.25759 1.03428 1.00952 0.84187 1.21078 1.06886 0.93753 0.97487 1.20255 0.94907 0.95406 0.88989 1.61844 1.02039 1.28356 1.33325 1.22458 0.91680 0.97051 1.01381 1.22490 0.99914 0.95572 0.90140 1.20845 0.99539 0.89752 0.85680 0.89566 1.22169 1.02417 1.00909 0.96727 1.45803 1.14337 1.46800 1.30197 1.20233 0.82990 0.79603 0.85129 1.90684 1.29713 1.63959 1.55581 1.23506 1.07799 1.01106 0.97796 1.85353 1.06446 1.54604 1.37083 1.22875 1.00441 1.30904 1.14010 0.91000 1.24975 0.94440 0.96364 0.97761 1.70020 1.02460 1.38141 1.39758 0.86191 0.77988 0.79982 0.81495 1.20293 1.20777 1.19689 0.92690 0.92669 0.91556 0.88808 0.89998 0.77248 0.89439 0.93359 0.91439 0.90492 0.95553 0.90049 0.93311 0.92481 0.92096 0.91326 0.76771 0.89382 0.89499 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.90 37.16 0.37 -0.74 16 2 C -0.05 -0.45 6.45 -27.88 -0.18 -0.63 16 3 C 0.04 0.48 6.58 -82.10 -0.54 -0.06 16 4 N -0.37 -4.62 12.07 33.42 0.40 -4.22 16 5 O 0.10 1.04 11.20 17.19 0.19 1.23 16 6 C -0.06 -0.47 12.16 29.74 0.36 -0.10 16 7 C -0.19 -1.61 5.07 -104.42 -0.53 -2.14 16 8 C 0.13 0.88 5.41 -4.98 -0.03 0.85 16 9 N -0.53 -4.35 4.43 -244.37 -1.08 -5.44 16 10 C 0.02 0.20 9.25 60.07 0.56 0.76 16 11 C 0.05 0.34 4.51 -3.83 -0.02 0.32 16 12 C 0.15 1.56 2.37 -67.93 -0.16 1.40 16 13 H 0.09 1.11 6.07 -51.93 -0.31 0.80 16 14 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 15 N -0.72 -9.19 4.80 -53.81 -0.26 -9.45 16 16 C 0.53 9.82 7.81 -10.99 -0.09 9.73 16 17 O -0.52 -11.69 15.53 5.55 0.09 -11.60 16 18 C -0.15 -3.09 6.16 36.01 0.22 -2.86 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 24 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.09 0.50 7.81 -51.93 -0.41 0.09 16 35 H 0.05 0.26 7.97 -51.93 -0.41 -0.16 16 36 H 0.07 0.67 7.52 -51.93 -0.39 0.28 16 37 H 0.08 0.86 6.25 -51.93 -0.32 0.54 16 38 H 0.03 0.19 8.03 -51.93 -0.42 -0.23 16 39 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 40 H 0.05 0.30 8.12 -51.93 -0.42 -0.12 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.40 4.25 8.60 -40.82 -0.35 3.89 16 45 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 46 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 406.60 15.07 6.13 6.13 Total: -1.00 -35.75 406.60 -8.16 -43.91 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.64 Total: 0.20 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 0.52 Total: -7.82 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.20 Total: -44.83 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.28 Total: -10.37 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.75 -8.16 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322117573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.045 kcal (2) G-P(sol) polarization free energy of solvation -35.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds