Wall clock time and date at job start Sat Apr 11 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47378 * 2 1 4 4 N 1.30178 * 126.80078 * 84.97974 * 3 2 1 5 5 O 1.20917 * 111.59918 * 179.97438 * 4 3 2 6 6 C 1.34034 * 111.57398 * 0.02562 * 5 4 3 7 7 C 1.35454 * 106.44666 * 359.74969 * 6 5 4 8 8 C 1.50694 * 128.01179 * 180.23757 * 7 6 5 9 9 N 1.46903 * 109.47361 * 105.02328 * 8 7 6 10 10 C 1.46903 * 110.99607 * 288.01817 * 9 8 7 11 11 C 1.46900 * 111.00103 * 164.06784 * 9 8 7 12 12 C 1.52997 * 109.46850 * 189.99729 * 11 9 8 13 13 H 1.09004 * 109.47202 * 294.99270 * 12 11 9 14 14 C 1.53005 * 109.46982 * 175.00061 * 12 11 9 15 15 N 1.46492 * 109.47420 * 55.00154 * 12 11 9 16 16 C 1.34773 * 120.00167 * 204.99813 * 15 12 11 17 17 O 1.21283 * 120.00013 * 359.97438 * 16 15 12 18 18 C 1.50701 * 120.00276 * 179.97438 * 16 15 12 19 19 S 1.80997 * 109.47429 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00136 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99822 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00353 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99765 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00278 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47187 * 90.00301 * 24 22 20 26 26 H 1.48498 * 109.47618 * 210.00367 * 24 22 20 27 27 H 1.48500 * 109.47582 * 330.00453 * 24 22 20 28 28 H 1.09003 * 109.46927 * 304.94109 * 1 2 3 29 29 H 1.09005 * 109.46693 * 64.93342 * 1 2 3 30 30 H 1.09000 * 109.47566 * 184.93582 * 1 2 3 31 31 H 1.08995 * 109.46919 * 239.99688 * 2 1 3 32 32 H 1.09003 * 109.46772 * 120.00224 * 2 1 3 33 33 H 1.08000 * 126.78178 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47174 * 225.01943 * 8 7 6 35 35 H 1.08997 * 109.47123 * 345.02069 * 8 7 6 36 36 H 1.08999 * 109.46918 * 64.10219 * 10 9 8 37 37 H 1.08998 * 109.47116 * 184.09607 * 10 9 8 38 38 H 1.08995 * 109.47593 * 304.10215 * 10 9 8 39 39 H 1.09000 * 109.47032 * 310.00102 * 11 9 8 40 40 H 1.09000 * 109.46876 * 69.99766 * 11 9 8 41 41 H 1.09001 * 109.47000 * 300.00207 * 14 12 11 42 42 H 1.09007 * 109.47191 * 60.00063 * 14 12 11 43 43 H 1.08997 * 109.47305 * 179.97438 * 14 12 11 44 44 H 0.97004 * 119.99856 * 25.00024 * 15 12 11 45 45 H 1.09004 * 109.47066 * 300.00147 * 18 16 15 46 46 H 1.08999 * 109.46976 * 59.99627 * 18 16 15 47 47 H 0.97000 * 120.00107 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2064 2.1864 1.0384 5 8 2.6220 3.2771 0.7226 6 6 2.7814 3.3785 -0.6044 7 6 2.4132 2.1845 -1.1273 8 6 2.4080 1.7674 -2.5753 9 7 3.5403 0.8667 -2.8296 10 6 4.8120 1.6019 -2.8123 11 6 3.3657 0.1467 -4.0981 12 6 4.4235 -0.9530 -4.2101 13 1 5.4133 -0.5004 -4.2693 14 6 4.1657 -1.7822 -5.4698 15 7 4.3528 -1.8204 -3.0317 16 6 5.4391 -2.5153 -2.6402 17 8 6.4752 -2.4229 -3.2639 18 6 5.3666 -3.4072 -1.4276 19 16 6.9731 -4.1978 -1.1631 20 6 6.6113 -5.1533 0.2725 21 1 5.6236 -5.1203 0.7082 22 6 7.5955 -5.9482 0.8433 23 7 8.7994 -5.9879 0.3125 24 14 7.2121 -6.9606 2.3656 25 1 6.7163 -8.2996 1.9576 26 1 8.4440 -7.1159 3.1801 27 1 6.1710 -6.2711 3.1694 28 1 -0.3633 0.5886 0.8424 29 1 -0.3633 0.4354 -0.9309 30 1 -0.3634 -1.0238 0.0884 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.1377 4.2405 -1.1489 34 1 1.4751 1.2510 -2.8014 35 1 2.4970 2.6505 -3.2081 36 1 4.9837 2.0073 -1.8152 37 1 5.6259 0.9261 -3.0747 38 1 4.7700 2.4176 -3.5339 39 1 2.3721 -0.3003 -4.1284 40 1 3.4762 0.8431 -4.9293 41 1 3.1758 -2.2348 -5.4107 42 1 4.2184 -1.1368 -6.3467 43 1 4.9195 -2.5654 -5.5499 44 1 3.5240 -1.8946 -2.5331 45 1 5.1063 -2.8109 -0.5531 46 1 4.6068 -4.1727 -1.5846 47 1 9.4871 -6.5438 0.7112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322117573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:31 Heat of formation + Delta-G solvation = -5.401195 kcal Electronic energy + Delta-G solvation = -27795.424156 eV Core-core repulsion = 23913.721550 eV Total energy + Delta-G solvation = -3881.702607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.84379 -40.75517 -38.93731 -36.68359 -35.65767 -34.58293 -33.32486 -32.38669 -31.95957 -29.92886 -28.61527 -27.87168 -27.65013 -25.38988 -24.30064 -22.31530 -21.91754 -21.70257 -21.26478 -19.81606 -18.52372 -18.27110 -17.85504 -17.27570 -16.87940 -16.69619 -16.27168 -16.19861 -15.99017 -15.76584 -15.19837 -15.04279 -14.62210 -14.57752 -14.27943 -13.99297 -13.90922 -13.65026 -13.50076 -13.22427 -13.15796 -13.09277 -12.90019 -12.87411 -12.68904 -12.58025 -12.43825 -12.36864 -12.23339 -11.74067 -11.68145 -11.64244 -11.14092 -10.82695 -10.77273 -10.37228 -10.26052 -9.94791 -9.25417 -8.64818 -8.34530 -6.11720 0.64419 1.28348 1.30273 1.41409 1.47511 1.58928 1.74182 2.27193 2.41371 2.48422 2.99455 3.00127 3.33975 3.35928 3.66582 3.81441 3.96019 4.08566 4.17425 4.21745 4.32423 4.35758 4.39911 4.42753 4.46762 4.50496 4.53669 4.55756 4.67821 4.72864 4.80636 4.83174 4.87096 4.91137 5.05603 5.06643 5.15257 5.16906 5.20964 5.34055 5.38008 5.41700 5.65897 6.06773 6.11915 6.19897 6.67569 7.06888 7.40151 7.43262 8.74744 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009832 B = 0.003061 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.178520 B = 9145.233064 C =10855.333578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.030 3.970 4 N -0.410 5.410 5 O 0.079 5.921 6 C -0.051 4.051 7 C -0.196 4.196 8 C 0.138 3.862 9 N -0.547 5.547 10 C 0.028 3.972 11 C 0.058 3.942 12 C 0.144 3.856 13 H 0.060 0.940 14 C -0.158 4.158 15 N -0.691 5.691 16 C 0.535 3.465 17 O -0.571 6.571 18 C -0.127 4.127 19 S -0.150 6.150 20 C -0.547 4.547 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.260 1.260 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.250 0.750 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.030 0.970 44 H 0.413 0.587 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.295 19.939 -9.730 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.129 4.129 4 N -0.118 5.118 5 O 0.018 5.982 6 C -0.133 4.133 7 C -0.200 4.200 8 C 0.010 3.990 9 N -0.271 5.271 10 C -0.120 4.120 11 C -0.070 4.070 12 C 0.039 3.961 13 H 0.078 0.922 14 C -0.216 4.216 15 N -0.343 5.343 16 C 0.321 3.679 17 O -0.450 6.450 18 C -0.279 4.279 19 S 0.077 5.923 20 C -0.695 4.695 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.818 3.182 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.184 1.184 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.266 0.734 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.049 0.951 44 H 0.250 0.750 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.596 19.570 -9.079 29.145 hybrid contribution -0.805 -0.326 0.649 1.084 sum -20.401 19.243 -8.430 29.284 Atomic orbital electron populations 1.21667 0.92951 1.02873 1.02047 1.20017 0.96977 0.87625 1.04013 1.23852 1.00802 0.99494 0.88717 1.73861 1.18298 0.93896 1.25751 1.84777 1.61612 1.27050 1.24775 1.26543 1.01641 1.02033 0.83043 1.21361 1.06923 0.93622 0.98097 1.20329 0.94659 0.96217 0.87769 1.61756 1.02150 1.29134 1.34091 1.22318 0.91496 0.97062 1.01131 1.22433 0.99497 0.94570 0.90514 1.21062 0.99870 0.90371 0.84768 0.92217 1.22107 1.02142 1.00213 0.97173 1.45582 1.13095 1.45150 1.30480 1.19908 0.83720 0.79910 0.84371 1.90673 1.31764 1.65686 1.56867 1.23344 1.03404 1.01600 0.99512 1.85506 1.12966 1.56053 1.37741 1.23203 1.00964 1.31132 1.14166 0.90197 1.26093 0.94055 0.97526 1.01319 1.70181 1.03713 1.39205 1.41651 0.84988 0.78109 0.78254 0.76860 1.19086 1.20247 1.18434 0.94177 0.91143 0.90527 0.87734 0.92044 0.73389 0.87752 0.91043 0.92779 0.93377 0.93316 0.87433 0.91065 0.90491 0.89659 0.95106 0.75039 0.88251 0.87582 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.90 71.98 0.71 -1.17 16 2 C -0.05 -0.85 6.45 29.85 0.19 -0.66 16 3 C 0.03 0.63 6.58 43.58 0.29 0.91 16 4 N -0.41 -10.38 12.07 -49.57 -0.60 -10.98 16 5 O 0.08 1.68 11.20 71.70 0.80 2.48 16 6 C -0.05 -0.67 12.16 67.18 0.82 0.15 16 7 C -0.20 -2.87 5.07 -19.74 -0.10 -2.97 16 8 C 0.14 1.25 5.41 85.55 0.46 1.71 16 9 N -0.55 -7.21 4.43 -927.06 -4.11 -11.32 16 10 C 0.03 0.46 9.25 127.69 1.18 1.64 16 11 C 0.06 0.60 4.51 86.30 0.39 0.99 16 12 C 0.14 2.78 2.37 44.99 0.11 2.89 16 13 H 0.06 1.53 6.07 -2.38 -0.01 1.52 16 14 C -0.16 -2.78 9.48 71.98 0.68 -2.10 16 15 N -0.69 -16.67 4.80 -442.54 -2.12 -18.79 16 16 C 0.54 19.79 7.81 87.66 0.68 20.47 16 17 O -0.57 -26.44 15.53 -3.04 -0.05 -26.49 16 18 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 19 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 20 C -0.55 -31.97 9.50 67.95 0.65 -31.32 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.86 5.49 84.86 0.47 1.33 16 23 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 24 Si 1.00 44.55 29.55 68.60 2.03 46.57 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.25 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.10 0.64 7.81 -2.39 -0.02 0.62 16 35 H 0.07 0.37 7.97 -2.39 -0.02 0.35 16 36 H 0.05 1.01 7.52 -2.39 -0.02 1.00 16 37 H 0.05 1.07 6.25 -2.39 -0.01 1.06 16 38 H 0.05 0.56 8.03 -2.39 -0.02 0.54 16 39 H 0.11 0.65 7.86 -2.39 -0.02 0.63 16 40 H 0.07 0.52 8.12 -2.39 -0.02 0.50 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.41 7.67 8.60 -92.70 -0.80 6.87 16 45 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 46 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 47 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -83.35 406.60 2.21 -81.14 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.17 Total: 16.50 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 6.97 Total: -12.90 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -6.55 Total: -97.65 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.76 Total: -24.01 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -83.35 2.21 -81.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322117573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.740 kcal (2) G-P(sol) polarization free energy of solvation -83.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds