Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 C 1.53002 * 109.46819 * 240.00775 * 2 1 3 5 5 C 1.50694 * 109.47727 * 120.00603 * 2 1 3 6 6 N 1.28649 * 124.72178 * 59.99512 * 5 2 1 7 7 C 1.33557 * 115.77013 * 180.02562 * 6 5 2 8 8 C 1.47269 * 123.14304 * 179.73125 * 7 6 5 9 9 O 1.21627 * 119.99983 * 173.75715 * 8 7 6 10 10 N 1.34773 * 119.99843 * 353.75030 * 8 7 6 11 11 C 1.46498 * 120.00240 * 3.49146 * 10 8 7 12 12 C 1.53001 * 109.47464 * 83.13175 * 11 10 8 13 13 O 1.42896 * 109.47052 * 65.00072 * 12 11 10 14 14 C 1.46503 * 120.00261 * 183.48605 * 10 8 7 15 15 C 1.52994 * 109.47108 * 89.99849 * 14 10 8 16 16 N 1.46495 * 109.47220 * 180.02562 * 15 14 10 17 17 C 1.36939 * 120.00404 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00291 * 180.02562 * 17 16 15 20 20 N 1.31613 * 119.99990 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47511 * 59.99890 * 21 19 17 23 23 H 1.48499 * 109.47188 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46932 * 299.99987 * 21 19 17 25 25 C 1.35205 * 113.71749 * 0.02562 * 7 6 5 26 26 S 1.70770 * 124.72231 * 240.02488 * 5 2 1 27 27 H 1.08997 * 109.47265 * 299.99386 * 1 2 3 28 28 H 1.09000 * 109.47888 * 59.99438 * 1 2 3 29 29 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46948 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47351 * 300.00405 * 3 2 1 32 32 H 1.09001 * 109.46441 * 60.00697 * 3 2 1 33 33 H 1.09003 * 109.47118 * 299.99077 * 4 2 1 34 34 H 1.09001 * 109.47461 * 59.99646 * 4 2 1 35 35 H 1.09008 * 109.46960 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47471 * 203.13756 * 11 10 8 37 37 H 1.09000 * 109.46929 * 323.13062 * 11 10 8 38 38 H 1.08997 * 109.46901 * 185.00168 * 12 11 10 39 39 H 1.09001 * 109.46643 * 305.00135 * 12 11 10 40 40 H 0.96701 * 113.99910 * 179.97438 * 13 12 11 41 41 H 1.08994 * 109.47266 * 210.00336 * 14 10 8 42 42 H 1.09004 * 109.46763 * 330.00175 * 14 10 8 43 43 H 1.09002 * 109.47300 * 300.00641 * 15 14 10 44 44 H 1.09004 * 109.47042 * 60.00497 * 15 14 10 45 45 H 0.96997 * 120.00328 * 0.02562 * 16 15 14 46 46 H 0.97003 * 119.99740 * 179.97438 * 20 19 17 47 47 H 1.07994 * 125.59207 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0324 -0.7105 1.2303 6 7 1.7782 -1.9371 1.5233 7 6 2.3156 -2.3858 2.6607 8 6 2.1248 -3.7602 3.1541 9 8 2.7312 -4.1433 4.1364 10 7 1.2782 -4.5933 2.5173 11 6 0.6061 -4.1577 1.2906 12 6 1.5399 -4.3646 0.0964 13 8 1.7832 -5.7614 -0.0815 14 6 1.0301 -5.9346 3.0517 15 6 -0.1524 -5.8866 4.0213 16 7 -0.4001 -7.2278 4.5561 17 6 -1.4175 -7.4315 5.4497 18 1 -2.0376 -6.6034 5.7600 19 6 -1.6519 -8.7022 5.9569 20 7 -0.8960 -9.7112 5.5792 21 14 -3.0402 -8.9801 7.1754 22 1 -4.3320 -8.5998 6.5493 23 1 -3.0800 -10.4133 7.5621 24 1 -2.8120 -8.1478 8.3840 25 6 3.0461 -1.4585 3.3199 26 16 3.0179 0.0007 2.4300 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9562 0.8901 33 1 1.6766 -1.7488 -1.2494 34 1 1.6765 -0.2072 -2.1393 35 1 3.1299 -0.7207 -1.2496 36 1 -0.3026 -4.7423 1.1470 37 1 0.3494 -3.1015 1.3724 38 1 1.0753 -3.9594 -0.8025 39 1 2.4839 -3.8518 0.2803 40 1 2.3685 -5.9673 -0.8233 41 1 0.8006 -6.6155 2.2321 42 1 1.9176 -6.2859 3.5781 43 1 0.0772 -5.2057 4.8409 44 1 -1.0399 -5.5354 3.4948 45 1 0.1565 -7.9716 4.2772 46 1 -1.0596 -10.5991 5.9339 47 1 3.5629 -1.6142 4.2553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326108751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = -22.377557 kcal Electronic energy + Delta-G solvation = -28348.789861 eV Core-core repulsion = 24466.351104 eV Total energy + Delta-G solvation = -3882.438757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93936 -39.04968 -37.16143 -36.86943 -35.50451 -34.16843 -31.43710 -30.33830 -29.34868 -27.93200 -27.71827 -27.63794 -25.87633 -23.92544 -23.13587 -22.28070 -21.08086 -19.77899 -19.17466 -18.25438 -17.35362 -17.06840 -16.55516 -16.06328 -15.80466 -15.38671 -14.90609 -14.59229 -14.52117 -14.41034 -13.95706 -13.83454 -13.58877 -13.44123 -13.12771 -13.06648 -12.75870 -12.65054 -12.61201 -12.53135 -12.15193 -12.04460 -11.92053 -11.51719 -11.39931 -11.34062 -11.09285 -10.84336 -10.81768 -10.52522 -10.15573 -10.07342 -9.90329 -9.80607 -9.69197 -9.56009 -9.14472 -8.77720 -8.33424 -6.83193 -5.66900 -2.95677 0.31114 0.96206 1.37548 1.83916 3.16663 3.38327 3.50849 3.53912 3.55129 3.56773 4.22750 4.35893 4.40738 4.43466 4.68990 4.73191 4.92234 5.05977 5.09304 5.14940 5.24986 5.27073 5.29996 5.36942 5.38411 5.42949 5.45429 5.52310 5.63443 5.64890 5.73707 5.84186 5.85929 5.90922 6.00164 6.17409 6.20936 6.33005 6.70346 6.86882 7.04381 7.19384 7.58347 7.70717 7.77955 8.31714 8.51801 9.62263 10.19879 10.55504 11.56111 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.002640 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.622256 B =10604.847128 C =10992.515403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.013 3.987 3 C -0.155 4.155 4 C -0.136 4.136 5 C 0.030 3.970 6 N -0.436 5.436 7 C 0.019 3.981 8 C 0.584 3.416 9 O -0.530 6.530 10 N -0.579 5.579 11 C 0.105 3.895 12 C 0.073 3.927 13 O -0.569 6.569 14 C 0.112 3.888 15 C 0.144 3.856 16 N -0.729 5.729 17 C -0.236 4.236 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.230 4.230 26 S 0.206 5.794 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.372 0.628 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.020 0.980 44 H 0.017 0.983 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 26.742 -18.497 33.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 C -0.213 4.213 4 C -0.195 4.195 5 C -0.249 4.249 6 N -0.151 5.151 7 C -0.115 4.115 8 C 0.369 3.631 9 O -0.406 6.406 10 N -0.309 5.309 11 C -0.018 4.018 12 C -0.006 4.006 13 O -0.373 6.373 14 C -0.010 4.010 15 C 0.015 3.985 16 N -0.374 5.374 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.372 4.372 26 S 0.465 5.535 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.218 0.782 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.938 27.140 -17.516 33.515 hybrid contribution -0.325 -1.348 0.497 1.473 sum 8.613 25.792 -17.019 32.079 Atomic orbital electron populations 1.21870 0.92009 1.03345 1.02330 1.19222 0.96751 0.93889 0.89240 1.22043 1.01671 0.94257 1.03374 1.21878 1.01176 1.01132 0.95270 1.27374 1.01642 0.94065 1.01787 1.67198 1.21073 1.11604 1.15257 1.20531 1.01065 0.97259 0.92642 1.17151 0.80037 0.82905 0.83052 1.90844 1.47855 1.75723 1.26186 1.47592 1.43170 1.15061 1.25123 1.22116 0.94804 1.02957 0.81957 1.22555 0.98888 0.81733 0.97385 1.86592 1.71352 1.24264 1.55116 1.21751 0.99918 0.81295 0.98084 1.20911 0.93953 0.89483 0.94150 1.42196 1.38633 1.04023 1.52533 1.19169 1.06978 0.93655 1.16950 0.91318 1.24743 0.99686 0.95749 1.00898 1.69659 1.41088 0.99789 1.47717 0.86240 0.81873 0.76739 0.81172 1.21304 1.21666 1.21301 1.26643 1.05860 0.97470 1.07248 1.82795 1.45172 1.12284 1.13295 0.92307 0.91477 0.91280 0.91787 0.90533 0.91712 0.91380 0.91497 0.92471 0.90153 0.86031 0.93352 0.93703 0.78180 0.89571 0.89921 0.96238 0.96497 0.78198 0.93487 0.79462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.45 37.15 0.31 -0.46 16 2 C 0.01 0.07 0.99 -155.66 -0.15 -0.08 16 3 C -0.16 -0.61 7.53 37.16 0.28 -0.33 16 4 C -0.14 -0.71 8.45 37.16 0.31 -0.39 16 5 C 0.03 0.25 5.74 -13.61 -0.08 0.18 16 6 N -0.44 -4.73 5.36 -8.51 -0.05 -4.78 16 7 C 0.02 0.26 6.31 -84.53 -0.53 -0.27 16 8 C 0.58 10.24 7.59 -12.59 -0.10 10.15 16 9 O -0.53 -11.16 16.28 5.25 0.09 -11.08 16 10 N -0.58 -9.83 2.44 -175.02 -0.43 -10.25 16 11 C 0.11 1.42 5.37 -4.04 -0.02 1.40 16 12 C 0.07 0.84 6.70 37.16 0.25 1.09 16 13 O -0.57 -7.32 13.33 -35.23 -0.47 -7.79 16 14 C 0.11 2.23 5.52 -4.04 -0.02 2.21 16 15 C 0.14 3.34 6.58 -4.05 -0.03 3.31 16 16 N -0.73 -20.31 5.60 -59.91 -0.34 -20.65 16 17 C -0.24 -7.10 9.99 -15.06 -0.15 -7.25 16 18 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 19 C -0.01 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -29.65 13.06 55.49 0.72 -28.92 16 21 Si 0.91 23.47 29.55 -169.99 -5.02 18.45 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 C -0.23 -2.61 10.62 29.65 0.31 -2.29 16 26 S 0.21 1.55 21.28 -107.50 -2.29 -0.74 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.23 7.91 -51.92 -0.41 -0.18 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.25 7.91 -51.93 -0.41 -0.16 16 33 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.08 1.13 8.02 -51.93 -0.42 0.72 16 37 H 0.12 1.51 5.27 -51.93 -0.27 1.23 16 38 H 0.05 0.44 7.89 -51.93 -0.41 0.03 16 39 H 0.04 0.54 7.04 -51.93 -0.37 0.17 16 40 H 0.37 3.08 9.12 45.56 0.42 3.49 16 41 H 0.09 1.70 7.80 -51.93 -0.40 1.30 16 42 H 0.08 1.80 7.38 -51.93 -0.38 1.42 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.38 11.12 7.67 -40.82 -0.31 10.81 16 46 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 47 H 0.19 2.06 8.04 -52.49 -0.42 1.64 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -36.76 396.78 -8.24 -45.00 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.73 Total: 8.09 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 0.29 Total: 6.70 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.08 Total: -64.60 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.38 Total: -18.87 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.45 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.29 Total: -0.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.76 -8.24 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326108751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.618 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds