Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 C 1.53002 * 109.46819 * 240.00775 * 2 1 3 5 5 C 1.50694 * 109.47727 * 120.00603 * 2 1 3 6 6 N 1.28649 * 124.72178 * 59.99512 * 5 2 1 7 7 C 1.33557 * 115.77013 * 180.02562 * 6 5 2 8 8 C 1.47269 * 123.14304 * 179.73125 * 7 6 5 9 9 O 1.21627 * 119.99983 * 173.75715 * 8 7 6 10 10 N 1.34773 * 119.99843 * 353.75030 * 8 7 6 11 11 C 1.46498 * 120.00240 * 3.49146 * 10 8 7 12 12 C 1.53001 * 109.47464 * 83.13175 * 11 10 8 13 13 O 1.42896 * 109.47052 * 65.00072 * 12 11 10 14 14 C 1.46503 * 120.00261 * 183.48605 * 10 8 7 15 15 C 1.52994 * 109.47108 * 89.99849 * 14 10 8 16 16 N 1.46495 * 109.47220 * 180.02562 * 15 14 10 17 17 C 1.36939 * 120.00404 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00291 * 180.02562 * 17 16 15 20 20 N 1.31613 * 119.99990 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47511 * 59.99890 * 21 19 17 23 23 H 1.48499 * 109.47188 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46932 * 299.99987 * 21 19 17 25 25 C 1.35205 * 113.71749 * 0.02562 * 7 6 5 26 26 S 1.70770 * 124.72231 * 240.02488 * 5 2 1 27 27 H 1.08997 * 109.47265 * 299.99386 * 1 2 3 28 28 H 1.09000 * 109.47888 * 59.99438 * 1 2 3 29 29 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46948 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47351 * 300.00405 * 3 2 1 32 32 H 1.09001 * 109.46441 * 60.00697 * 3 2 1 33 33 H 1.09003 * 109.47118 * 299.99077 * 4 2 1 34 34 H 1.09001 * 109.47461 * 59.99646 * 4 2 1 35 35 H 1.09008 * 109.46960 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47471 * 203.13756 * 11 10 8 37 37 H 1.09000 * 109.46929 * 323.13062 * 11 10 8 38 38 H 1.08997 * 109.46901 * 185.00168 * 12 11 10 39 39 H 1.09001 * 109.46643 * 305.00135 * 12 11 10 40 40 H 0.96701 * 113.99910 * 179.97438 * 13 12 11 41 41 H 1.08994 * 109.47266 * 210.00336 * 14 10 8 42 42 H 1.09004 * 109.46763 * 330.00175 * 14 10 8 43 43 H 1.09002 * 109.47300 * 300.00641 * 15 14 10 44 44 H 1.09004 * 109.47042 * 60.00497 * 15 14 10 45 45 H 0.96997 * 120.00328 * 0.02562 * 16 15 14 46 46 H 0.97003 * 119.99740 * 179.97438 * 20 19 17 47 47 H 1.07994 * 125.59207 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0324 -0.7105 1.2303 6 7 1.7782 -1.9371 1.5233 7 6 2.3156 -2.3858 2.6607 8 6 2.1248 -3.7602 3.1541 9 8 2.7312 -4.1433 4.1364 10 7 1.2782 -4.5933 2.5173 11 6 0.6061 -4.1577 1.2906 12 6 1.5399 -4.3646 0.0964 13 8 1.7832 -5.7614 -0.0815 14 6 1.0301 -5.9346 3.0517 15 6 -0.1524 -5.8866 4.0213 16 7 -0.4001 -7.2278 4.5561 17 6 -1.4175 -7.4315 5.4497 18 1 -2.0376 -6.6034 5.7600 19 6 -1.6519 -8.7022 5.9569 20 7 -0.8960 -9.7112 5.5792 21 14 -3.0402 -8.9801 7.1754 22 1 -4.3320 -8.5998 6.5493 23 1 -3.0800 -10.4133 7.5621 24 1 -2.8120 -8.1478 8.3840 25 6 3.0461 -1.4585 3.3199 26 16 3.0179 0.0007 2.4300 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9562 0.8901 33 1 1.6766 -1.7488 -1.2494 34 1 1.6765 -0.2072 -2.1393 35 1 3.1299 -0.7207 -1.2496 36 1 -0.3026 -4.7423 1.1470 37 1 0.3494 -3.1015 1.3724 38 1 1.0753 -3.9594 -0.8025 39 1 2.4839 -3.8518 0.2803 40 1 2.3685 -5.9673 -0.8233 41 1 0.8006 -6.6155 2.2321 42 1 1.9176 -6.2859 3.5781 43 1 0.0772 -5.2057 4.8409 44 1 -1.0399 -5.5354 3.4948 45 1 0.1565 -7.9716 4.2772 46 1 -1.0596 -10.5991 5.9339 47 1 3.5629 -1.6142 4.2553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326108751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = -49.461840 kcal Electronic energy + Delta-G solvation = -28349.964324 eV Core-core repulsion = 24466.351104 eV Total energy + Delta-G solvation = -3883.613219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.95551 -40.13588 -38.22418 -37.53111 -37.11039 -35.93626 -33.49488 -31.22859 -30.83772 -29.14977 -28.24174 -28.09068 -27.07877 -25.55229 -24.36333 -23.69785 -22.58852 -20.49018 -20.15010 -19.46043 -19.01664 -18.30230 -17.75980 -17.10016 -17.01207 -16.53598 -16.27848 -15.76890 -15.55389 -15.46138 -15.15751 -15.10108 -15.04530 -14.64317 -14.40793 -14.35049 -14.06794 -13.62292 -13.17850 -13.11147 -13.01592 -12.92634 -12.86257 -12.70018 -12.55852 -12.47625 -12.43601 -12.19407 -12.14178 -11.91420 -11.90983 -11.78531 -11.30214 -11.01126 -10.92356 -10.58526 -10.47749 -9.99379 -9.67695 -9.11293 -7.99649 -5.31844 -0.52358 0.24315 0.59629 0.86611 1.43569 1.48891 1.55024 1.87837 2.19537 2.53735 2.78946 3.32505 3.46936 3.49933 3.85930 4.00275 4.02469 4.03047 4.12650 4.15366 4.19361 4.26942 4.35703 4.36031 4.50542 4.53923 4.59985 4.77805 4.79902 4.83769 4.94627 4.97904 5.01796 5.06207 5.06448 5.08029 5.18827 5.34468 5.39227 5.45984 5.47468 5.50837 6.20353 6.23382 6.44004 6.93576 6.98458 7.26431 7.96417 8.23907 9.23766 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.002640 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.622256 B =10604.847128 C =10992.515403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.013 3.987 3 C -0.157 4.157 4 C -0.135 4.135 5 C 0.026 3.974 6 N -0.446 5.446 7 C -0.005 4.005 8 C 0.577 3.423 9 O -0.580 6.580 10 N -0.579 5.579 11 C 0.101 3.899 12 C 0.082 3.918 13 O -0.595 6.595 14 C 0.131 3.869 15 C 0.153 3.847 16 N -0.742 5.742 17 C -0.255 4.255 18 H 0.073 0.927 19 C -0.074 4.074 20 N -0.968 5.968 21 Si 0.983 3.017 22 H -0.273 1.273 23 H -0.289 1.289 24 H -0.279 1.279 25 C -0.249 4.249 26 S 0.295 5.705 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.391 0.609 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.001 0.999 44 H 0.026 0.974 45 H 0.375 0.625 46 H 0.255 0.745 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.407 29.725 -20.195 36.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 C -0.215 4.215 4 C -0.194 4.194 5 C -0.253 4.253 6 N -0.162 5.162 7 C -0.139 4.139 8 C 0.364 3.636 9 O -0.460 6.460 10 N -0.309 5.309 11 C -0.021 4.021 12 C 0.004 3.996 13 O -0.403 6.403 14 C 0.007 3.993 15 C 0.025 3.975 16 N -0.385 5.385 17 C -0.387 4.387 18 H 0.091 0.909 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.810 3.190 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.205 1.205 25 C -0.392 4.392 26 S 0.555 5.445 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.154 0.846 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.240 0.760 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.019 0.981 44 H 0.044 0.956 45 H 0.207 0.793 46 H 0.063 0.937 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.296 30.189 -19.273 36.764 hybrid contribution -0.070 -2.119 0.951 2.324 sum 8.226 28.070 -18.321 34.515 Atomic orbital electron populations 1.21883 0.91867 1.02694 1.03118 1.19408 0.96812 0.94775 0.88068 1.22092 1.02047 0.92831 1.04501 1.21888 1.01157 1.00683 0.95669 1.28004 1.00994 0.93563 1.02775 1.67091 1.21716 1.12961 1.14386 1.20018 1.03688 0.95594 0.94626 1.17768 0.79078 0.84427 0.82308 1.90796 1.49773 1.77065 1.28386 1.47659 1.43365 1.13761 1.26118 1.22389 0.94828 1.03553 0.81299 1.22474 0.98386 0.81274 0.97477 1.86535 1.72144 1.25093 1.56547 1.21292 0.97372 0.83438 0.97166 1.20900 0.95502 0.87047 0.94024 1.42371 1.38206 1.05295 1.52624 1.19569 1.07527 0.94128 1.17457 0.90880 1.25694 1.02539 0.95358 1.02998 1.69831 1.42883 1.00097 1.49020 0.85093 0.78802 0.76517 0.78593 1.19834 1.21525 1.20489 1.26881 1.05117 0.99561 1.07605 1.82480 1.42917 1.08476 1.10584 0.92725 0.89520 0.92672 0.91243 0.88693 0.91435 0.92496 0.89593 0.92513 0.90874 0.84629 0.90187 0.94084 0.75954 0.89275 0.92354 0.98141 0.95565 0.79283 0.93665 0.79997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.45 71.98 0.61 -0.58 16 2 C 0.01 0.11 0.99 -52.93 -0.05 0.06 16 3 C -0.16 -0.62 7.53 71.98 0.54 -0.07 16 4 C -0.14 -1.00 8.45 71.98 0.61 -0.39 16 5 C 0.03 0.37 5.74 88.57 0.51 0.88 16 6 N -0.45 -9.26 5.36 -180.84 -0.97 -10.22 16 7 C 0.00 -0.13 6.31 40.56 0.26 0.13 16 8 C 0.58 21.27 7.59 86.62 0.66 21.92 16 9 O -0.58 -26.15 16.28 -4.12 -0.07 -26.22 16 10 N -0.58 -20.48 2.44 -825.88 -2.01 -22.49 16 11 C 0.10 2.74 5.37 86.38 0.46 3.21 16 12 C 0.08 1.81 6.70 71.98 0.48 2.29 16 13 O -0.60 -15.07 13.33 -148.98 -1.99 -17.06 16 14 C 0.13 5.52 5.52 86.38 0.48 6.00 16 15 C 0.15 7.42 6.58 86.38 0.57 7.99 16 16 N -0.74 -42.80 5.60 -343.46 -1.92 -44.72 16 17 C -0.26 -15.63 9.99 84.03 0.84 -14.79 16 18 H 0.07 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.07 -4.50 5.50 84.86 0.47 -4.03 16 20 N -0.97 -62.63 13.06 21.65 0.28 -62.35 16 21 Si 0.98 48.52 29.55 68.60 2.03 50.55 16 22 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 25 C -0.25 -5.57 10.62 67.12 0.71 -4.86 16 26 S 0.29 3.73 21.28 -56.49 -1.20 2.53 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.22 7.91 -2.38 -0.02 0.20 16 31 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.07 0.25 7.91 -2.39 -0.02 0.23 16 33 H 0.06 0.56 7.89 -2.39 -0.02 0.55 16 34 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.07 2.06 8.02 -2.39 -0.02 2.05 16 37 H 0.14 3.30 5.27 -2.39 -0.01 3.29 16 38 H 0.08 1.27 7.89 -2.39 -0.02 1.25 16 39 H 0.04 0.95 7.04 -2.39 -0.02 0.93 16 40 H 0.39 6.14 9.12 -74.06 -0.68 5.46 16 41 H 0.09 3.68 7.80 -2.39 -0.02 3.66 16 42 H 0.06 2.73 7.38 -2.39 -0.02 2.71 16 43 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.38 22.68 7.67 -92.71 -0.71 21.97 16 46 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 47 H 0.18 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -82.02 396.78 0.89 -81.13 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.40 Total: 31.10 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 7.14 Total: 17.75 kcal Atomic # 7 Polarization: -135.16 SS G_CDS: -4.62 Total: -139.79 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -2.05 Total: -43.28 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.20 Total: 2.53 kcal Total: -82.02 0.89 -81.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326108751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.673 kcal (2) G-P(sol) polarization free energy of solvation -82.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds