Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46571 * 2 1 4 4 C 1.53003 * 109.47045 * 240.00577 * 2 1 3 5 5 O 1.45196 * 109.47381 * 119.99940 * 2 1 3 6 6 C 1.34233 * 116.99914 * 60.00680 * 5 2 1 7 7 O 1.20823 * 119.99666 * 359.97438 * 6 5 2 8 8 C 1.50690 * 119.99905 * 179.97438 * 6 5 2 9 9 N 1.46505 * 109.47166 * 179.97438 * 8 6 5 10 10 C 1.46758 * 124.34965 * 89.99670 * 9 8 6 11 11 C 1.54480 * 105.47172 * 162.98441 * 10 9 8 12 12 C 1.54631 * 101.76753 * 25.41796 * 11 10 9 13 13 H 1.09003 * 110.48794 * 94.00973 * 12 11 10 14 14 O 1.45191 * 110.48971 * 216.52472 * 12 11 10 15 15 C 1.34232 * 117.00242 * 209.99698 * 14 12 11 16 16 O 1.20822 * 119.99736 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00051 * 179.97438 * 15 14 12 18 18 C 1.52998 * 109.46973 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.47348 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.34425 * 124.34572 * 270.00047 * 9 8 6 28 28 O 1.21277 * 124.94414 * 0.44174 * 27 9 8 29 29 H 1.09004 * 109.47076 * 299.99289 * 1 2 3 30 30 H 1.08993 * 109.47366 * 59.99708 * 1 2 3 31 31 H 1.09001 * 109.46601 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46954 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47514 * 300.00201 * 3 2 1 34 34 H 1.08998 * 109.47247 * 60.00435 * 3 2 1 35 35 H 1.09003 * 109.46781 * 299.99697 * 4 2 1 36 36 H 1.09000 * 109.47102 * 59.99277 * 4 2 1 37 37 H 1.08999 * 109.47291 * 179.97438 * 4 2 1 38 38 H 1.09001 * 109.47504 * 59.99820 * 8 6 5 39 39 H 1.09006 * 109.47471 * 299.99420 * 8 6 5 40 40 H 1.08997 * 110.25005 * 43.98839 * 10 9 8 41 41 H 1.09003 * 110.24476 * 281.98408 * 10 9 8 42 42 H 1.08999 * 110.97375 * 267.29640 * 11 10 9 43 43 H 1.09002 * 111.00120 * 143.54868 * 11 10 9 44 44 H 1.09000 * 109.47333 * 60.00278 * 17 15 14 45 45 H 1.09002 * 109.47152 * 299.99750 * 17 15 14 46 46 H 1.09001 * 109.47671 * 60.00215 * 18 17 15 47 47 H 1.09006 * 109.47297 * 299.99934 * 18 17 15 48 48 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6536 -1.9685 1.3378 7 8 0.9562 -2.5025 0.5081 8 6 2.1185 -2.7437 2.5434 9 7 1.5943 -4.1101 2.4773 10 6 2.2867 -5.2325 1.8334 11 6 1.6028 -6.5060 2.3784 12 6 0.2005 -5.9742 2.7551 13 1 -0.4994 -6.1288 1.9339 14 8 -0.2819 -6.6226 3.9612 15 6 -1.6103 -6.7709 4.0838 16 8 -2.3457 -6.3716 3.2123 17 6 -2.1844 -7.4354 5.3085 18 6 -3.7098 -7.4777 5.1980 19 6 -4.2841 -8.1416 6.4229 20 1 -3.6268 -8.4982 7.2022 21 6 -5.6486 -8.2938 6.5489 22 7 -6.4491 -7.8600 5.5998 23 14 -6.3603 -9.1174 8.0669 24 1 -7.8410 -9.1572 7.9603 25 1 -5.8338 -10.5020 8.1718 26 1 -5.9722 -8.3473 9.2759 27 6 0.4171 -4.4969 2.9986 28 8 -0.3587 -3.7675 3.5791 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.1299 1.4427 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7488 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 1.7551 -2.2589 3.4495 39 1 3.2081 -2.7726 2.5588 40 1 3.3432 -5.2278 2.1015 41 1 2.1712 -5.1761 0.7510 42 1 2.1255 -6.8840 3.2570 43 1 1.5348 -7.2733 1.6072 44 1 -1.8996 -6.8702 6.1959 45 1 -1.7979 -8.4517 5.3854 46 1 -3.9944 -8.0432 4.3107 47 1 -4.0969 -6.4615 5.1208 48 1 -6.0794 -7.4327 4.8113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327125698.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = -209.801720 kcal Electronic energy + Delta-G solvation = -30201.150595 eV Core-core repulsion = 25835.538894 eV Total energy + Delta-G solvation = -4365.611701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46002 -40.79733 -39.52771 -37.40546 -36.70898 -36.08615 -34.51127 -33.87928 -32.76957 -30.98729 -28.25241 -27.82934 -27.76049 -27.68918 -25.40608 -23.13388 -22.66678 -21.93157 -20.45701 -20.03980 -19.64338 -17.96318 -17.54863 -17.39660 -17.05998 -16.60062 -16.56456 -16.22161 -15.76371 -15.58564 -14.98499 -14.71415 -14.20174 -14.09069 -13.94651 -13.88431 -13.68632 -13.26985 -13.02762 -12.92151 -12.81591 -12.72703 -12.54971 -12.42070 -12.36160 -12.29239 -12.08390 -11.75720 -11.63067 -11.55983 -11.32398 -11.29565 -10.82719 -10.76708 -10.47838 -10.17504 -10.16361 -10.02660 -9.88405 -9.72757 -9.22757 -8.58787 -8.30253 -6.33499 -4.04313 1.84198 1.91383 2.10862 2.68459 2.78593 3.11016 3.46455 3.49101 3.67781 3.94898 4.05315 4.20615 4.31223 4.34220 4.48543 4.50045 4.57579 4.59945 4.62356 4.84503 4.94898 5.06547 5.09035 5.15199 5.26741 5.30999 5.37864 5.42477 5.42576 5.44418 5.45240 5.59485 5.65875 5.82889 5.93420 5.95200 6.02661 6.07898 6.16299 6.49811 6.57454 6.79113 7.43574 7.45598 7.49079 7.82725 8.10640 8.26704 8.47511 8.88866 9.69305 11.07456 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.002082 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.407385 B =13445.441368 C =14319.035094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.140 4.140 4 C -0.181 4.181 5 O -0.352 6.352 6 C 0.443 3.557 7 O -0.490 6.490 8 C 0.137 3.863 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.124 4.124 12 C 0.055 3.945 13 H 0.124 0.876 14 O -0.341 6.341 15 C 0.457 3.543 16 O -0.497 6.497 17 C -0.093 4.093 18 C 0.020 3.980 19 C -0.609 4.609 20 H 0.052 0.948 21 C 0.015 3.985 22 N -0.909 5.909 23 Si 1.072 2.928 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.287 1.287 27 C 0.515 3.485 28 O -0.498 6.498 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.017 0.983 47 H 0.018 0.982 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.243 12.971 -12.618 32.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.081 3.919 3 C -0.197 4.197 4 C -0.238 4.238 5 O -0.269 6.269 6 C 0.284 3.716 7 O -0.376 6.376 8 C 0.013 3.987 9 N -0.345 5.345 10 C -0.016 4.016 11 C -0.162 4.162 12 C -0.004 4.004 13 H 0.141 0.859 14 O -0.259 6.259 15 C 0.301 3.699 16 O -0.382 6.382 17 C -0.131 4.131 18 C -0.017 4.017 19 C -0.647 4.647 20 H 0.071 0.929 21 C -0.189 4.189 22 N -0.544 5.544 23 Si 0.900 3.100 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.214 1.214 27 C 0.302 3.698 28 O -0.370 6.370 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.035 0.965 47 H 0.036 0.964 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.954 12.974 -12.146 30.636 hybrid contribution 1.417 0.721 -1.163 1.969 sum 26.371 13.695 -13.309 32.559 Atomic orbital electron populations 1.22495 0.93773 1.04975 1.02918 1.22222 0.94605 0.92249 0.82793 1.21853 1.02099 0.92519 1.03246 1.22477 1.01482 1.03170 0.96719 1.86525 1.69801 1.25095 1.45470 1.24293 0.78118 0.81083 0.88138 1.90611 1.34124 1.70003 1.42851 1.20791 1.01134 0.81238 0.95570 1.47761 1.21402 1.07798 1.57540 1.22194 0.97278 0.83975 0.98157 1.22756 0.92711 0.97312 1.03377 1.23158 0.97686 0.89727 0.89825 0.85873 1.86710 1.27130 1.71362 1.40653 1.24885 0.79254 0.76131 0.89671 1.90636 1.59510 1.46022 1.42007 1.21619 0.99971 1.00234 0.91236 1.19151 0.86758 0.97811 0.98019 1.21964 0.94557 1.43022 1.05174 0.92923 1.25889 0.93779 0.96389 1.02850 1.70742 1.38265 1.36520 1.08905 0.83504 0.76216 0.75884 0.74369 1.20764 1.21393 1.21388 1.21064 0.80385 0.90673 0.77698 1.90789 1.46433 1.59450 1.40300 0.91811 0.90955 0.89802 0.91469 0.90282 0.91339 0.89889 0.90970 0.92027 0.85607 0.85689 0.89259 0.90175 0.87978 0.87862 0.88635 0.88645 0.96461 0.96373 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.12 1.00 1.13 -90.61 -0.10 0.90 16 3 C -0.14 -0.84 8.85 37.16 0.33 -0.51 16 4 C -0.18 -1.41 8.37 37.16 0.31 -1.10 16 5 O -0.35 -3.39 9.89 -39.27 -0.39 -3.78 16 6 C 0.44 4.70 7.34 36.00 0.26 4.97 16 7 O -0.49 -6.53 11.93 -18.75 -0.22 -6.75 16 8 C 0.14 1.14 6.52 -5.20 -0.03 1.11 16 9 N -0.61 -6.41 2.42 -173.79 -0.42 -6.83 16 10 C 0.11 0.72 7.35 -3.12 -0.02 0.69 16 11 C -0.12 -0.99 6.92 -25.10 -0.17 -1.16 16 12 C 0.06 0.78 3.29 -26.74 -0.09 0.70 16 13 H 0.12 1.89 7.14 -51.93 -0.37 1.52 16 14 O -0.34 -5.84 9.95 -42.16 -0.42 -6.26 16 15 C 0.46 9.59 7.96 36.00 0.29 9.87 16 16 O -0.50 -12.01 15.19 -18.75 -0.28 -12.30 16 17 C -0.09 -2.01 5.75 -27.89 -0.16 -2.17 16 18 C 0.02 0.54 3.57 -27.88 -0.10 0.44 16 19 C -0.61 -17.69 9.11 -34.44 -0.31 -18.00 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 21 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 22 N -0.91 -29.00 13.65 55.43 0.76 -28.24 16 23 Si 1.07 25.66 29.90 -169.99 -5.08 20.57 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.52 8.01 7.71 -10.86 -0.08 7.93 16 28 O -0.50 -10.11 17.59 1.50 0.03 -10.09 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.06 5.89 -51.93 -0.31 0.76 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.82 5.89 -51.93 -0.31 0.52 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.13 1.09 7.93 -51.93 -0.41 0.68 16 39 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 45 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 46 H 0.02 0.49 7.97 -51.93 -0.41 0.08 16 47 H 0.02 0.53 7.97 -51.93 -0.41 0.12 16 48 H 0.27 8.81 7.22 -40.82 -0.29 8.51 16 LS Contribution 401.25 15.07 6.05 6.05 Total: -1.00 -39.43 401.25 -7.30 -46.73 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.64 Total: -1.64 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 0.33 Total: 2.54 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.34 Total: -35.07 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.29 Total: -39.17 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.43 -7.30 -46.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327125698.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.074 kcal (2) G-P(sol) polarization free energy of solvation -39.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds