Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34226 * 116.99826 * 60.00523 * 5 2 1 7 7 O 1.20826 * 120.00044 * 359.97438 * 6 5 2 8 8 C 1.50700 * 119.99715 * 180.02562 * 6 5 2 9 9 N 1.46504 * 109.46911 * 179.97438 * 8 6 5 10 10 C 1.46766 * 124.34980 * 89.99901 * 9 8 6 11 11 C 1.54483 * 105.47242 * 197.01538 * 10 9 8 12 12 C 1.54634 * 101.76322 * 334.58341 * 11 10 9 13 13 H 1.09000 * 110.48595 * 265.98431 * 12 11 10 14 14 O 1.45206 * 110.48030 * 143.47610 * 12 11 10 15 15 C 1.34234 * 116.99336 * 150.00197 * 14 12 11 16 16 O 1.20821 * 120.00328 * 359.97438 * 15 14 12 17 17 C 1.50703 * 119.99815 * 179.97438 * 15 14 12 18 18 C 1.52996 * 109.47223 * 179.97438 * 17 15 14 19 19 C 1.50695 * 109.47019 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00328 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00234 * 180.02562 * 19 18 17 22 22 N 1.31521 * 120.00294 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99857 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46995 * 90.00266 * 23 21 19 25 25 H 1.48496 * 109.47641 * 210.00254 * 23 21 19 26 26 H 1.48503 * 109.47068 * 330.00544 * 23 21 19 27 27 C 1.34426 * 124.34847 * 269.69661 * 9 8 6 28 28 O 1.21278 * 124.93906 * 359.58025 * 27 9 8 29 29 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 30 30 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 31 31 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 34 34 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 35 35 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 36 36 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 37 37 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.46957 * 299.99389 * 8 6 5 39 39 H 1.08998 * 109.47533 * 59.99910 * 8 6 5 40 40 H 1.08989 * 110.24445 * 316.01560 * 10 9 8 41 41 H 1.09000 * 110.24530 * 77.93207 * 10 9 8 42 42 H 1.08999 * 110.97088 * 92.70223 * 11 10 9 43 43 H 1.08991 * 110.97096 * 216.43105 * 11 10 9 44 44 H 1.09005 * 109.47103 * 300.00082 * 17 15 14 45 45 H 1.09001 * 109.47172 * 59.99433 * 17 15 14 46 46 H 1.08996 * 109.47196 * 299.99962 * 18 17 15 47 47 H 1.09000 * 109.47004 * 60.00223 * 18 17 15 48 48 H 0.97003 * 119.99720 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6535 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5082 8 6 2.1175 -2.7433 2.5442 9 7 1.5933 -4.1098 2.4780 10 6 2.2865 -5.2324 1.8350 11 6 1.2073 -6.3178 1.6260 12 6 0.1903 -5.9695 2.7376 13 1 0.3920 -6.5533 3.6357 14 8 -1.1666 -6.2019 2.2758 15 6 -2.0738 -6.5508 3.2016 16 8 -1.7450 -6.6588 4.3591 17 6 -3.5026 -6.8078 2.7970 18 6 -4.3223 -7.1862 4.0322 19 6 -5.7508 -7.4438 3.6275 20 1 -6.0447 -7.3476 2.5927 21 6 -6.6828 -7.8022 4.5783 22 7 -7.9295 -8.0275 4.2250 23 14 -6.1745 -7.9693 6.3680 24 1 -6.3428 -6.6631 7.0544 25 1 -7.0250 -8.9901 7.0311 26 1 -4.7514 -8.3872 6.4414 27 6 0.4184 -4.4978 3.0034 28 8 -0.3484 -3.7728 3.6012 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6768 -1.7490 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 3.2069 -2.7721 2.5605 39 1 1.7532 -2.2583 3.4498 40 1 2.6992 -4.9211 0.8755 41 1 3.0794 -5.6068 2.4825 42 1 0.7521 -6.2304 0.6395 43 1 1.6225 -7.3145 1.7748 44 1 -3.9199 -5.9077 2.3454 45 1 -3.5348 -7.6245 2.0758 46 1 -3.9049 -8.0864 4.4834 47 1 -4.2902 -6.3698 4.7536 48 1 -8.5852 -8.2793 4.8940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327125725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = -201.879624 kcal Electronic energy + Delta-G solvation = -30407.887820 eV Core-core repulsion = 26042.619647 eV Total energy + Delta-G solvation = -4365.268173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.45681 -40.79313 -39.54926 -37.39036 -36.71550 -36.09890 -34.49475 -33.59362 -32.76052 -31.35808 -28.27541 -27.83053 -27.80622 -27.73623 -26.19376 -23.10209 -22.52218 -21.77384 -20.25448 -19.95740 -19.57301 -17.98577 -17.61297 -17.41597 -16.98303 -16.83130 -16.48797 -16.26560 -15.60120 -15.57862 -14.85585 -14.67142 -14.37987 -14.13298 -14.01836 -13.95725 -13.86655 -13.18584 -12.99332 -12.88851 -12.87309 -12.71237 -12.54165 -12.46083 -12.34903 -12.33422 -12.26759 -11.73404 -11.61356 -11.48042 -11.36963 -11.27496 -10.97674 -10.74738 -10.44969 -10.28675 -10.13153 -9.93629 -9.74758 -9.67701 -9.24197 -9.22063 -8.51837 -6.03621 -4.03190 1.75429 1.87797 2.36710 2.55289 2.73398 3.13021 3.38245 3.44548 3.53975 3.93690 4.06506 4.22284 4.32881 4.35864 4.49614 4.50081 4.51925 4.54265 4.63678 4.81705 4.96473 5.03464 5.08279 5.17141 5.28425 5.31199 5.32546 5.37251 5.43177 5.44265 5.47423 5.61157 5.67262 5.84977 5.92445 5.97627 6.02851 6.06072 6.18109 6.47922 6.56587 6.76132 7.28564 7.35298 7.47508 7.74204 7.80975 8.18702 8.50572 8.98759 9.58241 11.08927 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.002339 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.000768 B =11970.433610 C =12799.802197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 C -0.140 4.140 4 C -0.181 4.181 5 O -0.353 6.353 6 C 0.442 3.558 7 O -0.486 6.486 8 C 0.136 3.864 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.124 4.124 12 C 0.056 3.944 13 H 0.123 0.877 14 O -0.337 6.337 15 C 0.459 3.541 16 O -0.502 6.502 17 C -0.093 4.093 18 C -0.002 4.002 19 C -0.526 4.526 20 H 0.076 0.924 21 C 0.070 3.930 22 N -0.901 5.901 23 Si 0.877 3.123 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.262 1.262 27 C 0.515 3.485 28 O -0.498 6.498 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.026 0.974 47 H 0.022 0.978 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.897 13.610 -10.627 34.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.082 3.918 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.270 6.270 6 C 0.282 3.718 7 O -0.372 6.372 8 C 0.012 3.988 9 N -0.345 5.345 10 C -0.015 4.015 11 C -0.162 4.162 12 C -0.003 4.003 13 H 0.141 0.859 14 O -0.254 6.254 15 C 0.303 3.697 16 O -0.388 6.388 17 C -0.130 4.130 18 C -0.040 4.040 19 C -0.563 4.563 20 H 0.094 0.906 21 C -0.131 4.131 22 N -0.539 5.539 23 Si 0.704 3.296 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.186 1.186 27 C 0.301 3.699 28 O -0.370 6.370 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.044 0.956 47 H 0.041 0.959 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 29.203 13.849 -10.144 33.875 hybrid contribution 0.170 0.074 0.857 0.876 sum 29.372 13.923 -9.288 33.806 Atomic orbital electron populations 1.22496 0.93724 1.05037 1.02912 1.22220 0.94634 0.92206 0.82774 1.21854 1.02072 0.92564 1.03241 1.22477 1.01440 1.03215 0.96723 1.86521 1.69849 1.25111 1.45507 1.24245 0.78241 0.81096 0.88179 1.90626 1.33892 1.69923 1.42733 1.20772 1.01095 0.81268 0.95649 1.47749 1.21609 1.07616 1.57569 1.22170 0.95142 0.85425 0.98713 1.22750 0.93847 0.99541 1.00042 1.23130 0.82538 0.93953 1.00710 0.85934 1.86747 1.17828 1.79788 1.41032 1.24872 0.89097 0.71712 0.84049 1.90612 1.80369 1.47669 1.20101 1.21559 0.84202 1.04109 1.03173 1.19491 0.95052 0.97345 0.92075 1.21025 0.91175 1.47391 0.96754 0.90621 1.24952 0.94718 0.94439 0.99017 1.69909 1.02293 1.47389 1.34337 0.86802 0.79322 0.78265 0.85203 1.20139 1.21337 1.18588 1.21099 0.80501 0.90536 0.77748 1.90786 1.46947 1.59465 1.39780 0.91844 0.90938 0.89718 0.91502 0.90266 0.91372 0.89836 0.90951 0.92075 0.85782 0.85661 0.89581 0.89990 0.87972 0.87858 0.88213 0.88165 0.95558 0.95938 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 2 C 0.12 0.99 1.13 -90.62 -0.10 0.89 16 3 C -0.14 -0.82 8.85 37.16 0.33 -0.50 16 4 C -0.18 -1.39 8.37 37.16 0.31 -1.08 16 5 O -0.35 -3.33 9.89 -39.25 -0.39 -3.72 16 6 C 0.44 4.57 7.34 36.01 0.26 4.84 16 7 O -0.49 -6.35 11.93 -18.75 -0.22 -6.58 16 8 C 0.14 1.09 6.53 -5.19 -0.03 1.06 16 9 N -0.61 -6.13 2.42 -173.78 -0.42 -6.56 16 10 C 0.11 0.68 7.35 -3.12 -0.02 0.66 16 11 C -0.12 -1.00 6.92 -25.09 -0.17 -1.17 16 12 C 0.06 0.75 3.28 -26.74 -0.09 0.67 16 13 H 0.12 1.64 7.14 -51.93 -0.37 1.27 16 14 O -0.34 -5.73 9.96 -42.06 -0.42 -6.15 16 15 C 0.46 9.21 7.96 36.01 0.29 9.49 16 16 O -0.50 -11.31 15.19 -18.75 -0.28 -11.59 16 17 C -0.09 -1.93 5.75 -27.88 -0.16 -2.09 16 18 C 0.00 -0.05 3.33 -27.89 -0.09 -0.15 16 19 C -0.53 -15.24 9.66 -34.44 -0.33 -15.57 16 20 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 22 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 23 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 27 C 0.51 7.68 7.72 -10.86 -0.08 7.60 16 28 O -0.50 -9.76 17.58 1.90 0.03 -9.72 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.06 5.89 -51.93 -0.31 0.75 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.82 5.89 -51.93 -0.31 0.51 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.13 1.03 7.92 -51.93 -0.41 0.62 16 40 H 0.09 0.43 8.14 -51.94 -0.42 0.01 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.88 8.11 -51.93 -0.42 0.45 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 45 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 46 H 0.03 0.68 7.16 -51.93 -0.37 0.30 16 47 H 0.02 0.59 7.53 -51.93 -0.39 0.20 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -38.73 398.95 -6.93 -45.66 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.66 Total: -3.27 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 0.31 Total: 5.18 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.35 Total: -33.90 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.28 Total: -37.76 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.73 -6.93 -45.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327125725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.224 kcal (2) G-P(sol) polarization free energy of solvation -38.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds