Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00575 * 2 1 4 4 C 1.50697 * 109.47233 * 180.02562 * 3 2 1 5 5 N 1.30940 * 122.90524 * 90.02622 * 4 3 2 6 6 C 1.29437 * 117.36213 * 179.97438 * 5 4 3 7 7 S 1.70951 * 110.39218 * 359.97438 * 6 5 4 8 8 C 1.35672 * 122.90152 * 270.00157 * 4 3 2 9 9 C 1.46673 * 126.13032 * 0.03937 * 8 4 3 10 10 O 1.21692 * 120.00144 * 350.84329 * 9 8 4 11 11 N 1.34778 * 120.00169 * 170.83846 * 9 8 4 12 12 C 1.46504 * 119.99732 * 0.70091 * 11 9 8 13 13 C 1.46500 * 120.00288 * 180.70344 * 11 9 8 14 14 C 1.52998 * 109.47272 * 90.00173 * 13 11 9 15 15 C 1.52997 * 109.47085 * 299.99920 * 14 13 11 16 16 C 1.52999 * 109.47145 * 60.00129 * 14 13 11 17 17 C 1.53003 * 109.47067 * 179.97438 * 14 13 11 18 18 N 1.46500 * 109.47118 * 179.97438 * 17 14 13 19 19 C 1.36935 * 120.00039 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99930 * 180.02562 * 19 18 17 22 22 N 1.31611 * 120.00031 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99783 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47178 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47268 * 119.99896 * 23 21 19 26 26 H 1.48502 * 109.47255 * 239.99687 * 23 21 19 27 27 H 1.08992 * 109.47433 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47097 * 300.00593 * 1 2 3 29 29 H 1.09003 * 109.46892 * 59.99872 * 1 2 3 30 30 H 1.08997 * 109.46556 * 59.99706 * 3 2 1 31 31 H 1.09000 * 109.46844 * 300.00154 * 3 2 1 32 32 H 1.07995 * 124.80337 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46974 * 83.48260 * 12 11 9 34 34 H 1.08996 * 109.47448 * 203.48208 * 12 11 9 35 35 H 1.08999 * 109.47135 * 323.48432 * 12 11 9 36 36 H 1.09002 * 109.47004 * 210.00238 * 13 11 9 37 37 H 1.08999 * 109.46845 * 329.99710 * 13 11 9 38 38 H 1.08997 * 109.47120 * 60.00025 * 15 14 13 39 39 H 1.08998 * 109.47379 * 180.02562 * 15 14 13 40 40 H 1.09007 * 109.47206 * 300.00272 * 15 14 13 41 41 H 1.08993 * 109.47784 * 59.99962 * 16 14 13 42 42 H 1.08998 * 109.46888 * 180.02562 * 16 14 13 43 43 H 1.09006 * 109.46912 * 299.99712 * 16 14 13 44 44 H 1.09002 * 109.47143 * 300.00024 * 17 14 13 45 45 H 1.08999 * 109.46911 * 59.99622 * 17 14 13 46 46 H 0.96998 * 120.00062 * 359.97438 * 18 17 14 47 47 H 0.97003 * 119.99925 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2213 1.1308 -1.1003 6 6 5.5057 1.0294 -0.9758 7 16 5.9431 0.9950 0.6765 8 6 4.2477 1.1278 1.1382 9 6 3.7250 1.1682 2.5080 10 8 2.5526 1.4286 2.7044 11 7 4.5431 0.9168 3.5492 12 6 5.9579 0.6183 3.3136 13 6 4.0175 0.9420 4.9164 14 6 3.5226 -0.4544 5.2984 15 6 2.4152 -0.8844 4.3342 16 6 4.6839 -1.4472 5.2166 17 6 2.9743 -0.4282 6.7266 18 7 2.4998 -1.7652 7.0921 19 6 1.9626 -1.9857 8.3322 20 1 1.8892 -1.1742 9.0410 21 6 1.5135 -3.2527 8.6787 22 7 1.6035 -4.2418 7.8152 23 14 0.7814 -3.5537 10.3707 24 1 0.7942 -2.2884 11.1478 25 1 -0.6169 -4.0327 10.2270 26 1 1.5853 -4.5794 11.0826 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 6.2023 0.9743 -1.7992 33 1 6.5129 1.5503 3.2069 34 1 6.3553 0.0533 4.1567 35 1 6.0581 0.0294 2.4019 36 1 4.8065 1.2483 5.6033 37 1 3.1903 1.6493 4.9747 38 1 2.8061 -0.9031 3.3170 39 1 2.0622 -1.8790 4.6066 40 1 1.5878 -0.1770 4.3925 41 1 5.4728 -1.1410 5.9034 42 1 4.3311 -2.4421 5.4883 43 1 5.0748 -1.4660 4.1993 44 1 3.7636 -0.1221 7.4132 45 1 2.1472 0.2792 6.7853 46 1 2.5654 -2.4940 6.4554 47 1 1.2900 -5.1272 8.0575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329341914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = -6.379114 kcal Electronic energy + Delta-G solvation = -28738.568176 eV Core-core repulsion = 24856.823164 eV Total energy + Delta-G solvation = -3881.745012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76844 -39.71065 -37.56847 -37.25610 -35.26160 -33.17122 -31.59007 -30.22170 -28.61823 -28.05561 -26.72971 -26.38569 -25.77052 -25.08224 -24.68020 -22.73076 -21.20536 -19.07879 -18.79478 -18.34225 -17.23527 -16.88406 -16.55569 -16.43257 -15.90321 -15.58042 -15.30997 -14.91496 -14.52200 -14.41679 -14.12345 -13.76907 -13.57866 -13.46601 -13.36000 -13.16800 -12.78392 -12.61497 -12.33771 -12.30445 -12.14378 -11.68330 -11.37534 -11.24515 -11.14450 -10.96046 -10.80937 -10.75076 -10.37394 -10.21058 -10.11473 -9.91903 -9.83385 -9.70787 -9.63913 -9.50367 -9.27139 -8.83059 -8.63251 -6.85181 -5.71992 -2.99474 -0.04201 0.88718 1.28254 2.15380 2.75353 2.98775 3.45920 3.51538 3.53781 3.70190 4.11914 4.35773 4.63305 4.71046 4.71877 4.84387 4.97226 5.14652 5.22425 5.25357 5.34758 5.35815 5.40484 5.42214 5.51569 5.59331 5.70282 5.70545 5.78527 5.91991 5.94746 6.09697 6.17079 6.29098 6.41464 6.53999 6.63180 6.75922 6.80151 6.95809 7.02080 7.06849 7.14488 7.36248 7.74808 7.98927 8.47386 9.58600 10.17953 10.52599 11.51149 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.002914 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.754119 B = 9607.057310 C =10658.513440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.125 3.875 4 C 0.140 3.860 5 N -0.466 5.466 6 C 0.000 4.000 7 S 0.196 5.804 8 C -0.271 4.271 9 C 0.594 3.406 10 O -0.509 6.509 11 N -0.600 5.600 12 C 0.059 3.941 13 C 0.130 3.870 14 C -0.087 4.087 15 C -0.123 4.123 16 C -0.137 4.137 17 C 0.166 3.834 18 N -0.728 5.728 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.293 1.293 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.497 13.818 -18.438 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.046 3.954 4 C 0.001 3.999 5 N -0.180 5.180 6 C -0.295 4.295 7 S 0.453 5.547 8 C -0.395 4.395 9 C 0.381 3.619 10 O -0.386 6.386 11 N -0.333 5.333 12 C -0.086 4.086 13 C 0.008 3.992 14 C -0.088 4.088 15 C -0.180 4.180 16 C -0.194 4.194 17 C 0.038 3.962 18 N -0.373 5.373 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.220 1.220 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.218 0.782 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.220 0.780 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.727 13.770 -18.218 25.672 hybrid contribution -1.188 -0.376 0.467 1.331 sum 10.539 13.394 -17.751 24.609 Atomic orbital electron populations 1.22737 0.80260 1.03002 1.00080 1.87896 1.20137 1.26276 1.95519 1.21091 0.85152 0.86412 1.02743 1.20232 0.97191 0.97025 0.85447 1.66124 1.05275 1.15208 1.31351 1.29083 0.95521 1.01519 1.03348 1.84362 1.05506 1.64427 1.00362 1.25659 0.96520 1.17990 0.99349 1.16629 0.85630 0.77501 0.82188 1.90804 1.15305 1.48403 1.84047 1.47578 1.09235 1.69419 1.07027 1.22195 0.81923 1.01627 1.02836 1.21654 0.99693 0.98212 0.79678 1.21130 0.96362 0.93954 0.97366 1.21710 0.97515 1.02018 0.96797 1.21887 0.97245 1.00573 0.99704 1.20569 0.95636 0.89531 0.90451 1.42394 1.73733 1.05574 1.15579 1.19278 1.31869 0.94369 0.91152 0.91233 1.24718 1.02306 0.95976 0.98111 1.69667 1.53188 1.00891 1.34519 0.86132 0.78582 0.77584 0.83995 1.20617 1.21947 1.21984 0.89434 0.93384 0.94274 0.88551 0.92025 0.78211 0.91624 0.88211 0.91084 0.90158 0.89331 0.94225 0.92121 0.92512 0.93155 0.91307 0.93779 0.96489 0.96267 0.77985 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -5.65 10.69 -35.23 -0.38 -6.03 16 3 C 0.12 1.67 5.86 36.00 0.21 1.88 16 4 C 0.14 1.85 6.42 -83.89 -0.54 1.31 16 5 N -0.47 -5.63 10.50 -11.53 -0.12 -5.75 16 6 C 0.00 0.00 12.22 51.75 0.63 0.63 16 7 S 0.20 1.52 18.17 -107.50 -1.95 -0.43 16 8 C -0.27 -3.32 6.24 -37.10 -0.23 -3.55 16 9 C 0.59 8.27 6.00 -12.85 -0.08 8.19 16 10 O -0.51 -8.42 12.09 5.20 0.06 -8.36 16 11 N -0.60 -7.18 2.40 -183.13 -0.44 -7.62 16 12 C 0.06 0.49 7.65 59.85 0.46 0.95 16 13 C 0.13 1.72 4.57 -4.04 -0.02 1.70 16 14 C -0.09 -1.43 0.60 -154.51 -0.09 -1.52 16 15 C -0.12 -2.28 6.98 37.16 0.26 -2.02 16 16 C -0.14 -2.12 7.07 37.16 0.26 -1.86 16 17 C 0.17 3.36 5.15 -4.04 -0.02 3.34 16 18 N -0.73 -18.48 5.00 -59.91 -0.30 -18.78 16 19 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 1.35 5.84 -51.93 -0.30 1.04 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.07 0.41 7.82 -51.93 -0.41 0.00 16 34 H 0.10 0.76 6.35 -51.93 -0.33 0.43 16 35 H 0.07 0.57 4.62 -23.81 -0.11 0.46 16 36 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 37 H 0.09 1.27 7.41 -51.93 -0.38 0.89 16 38 H 0.04 0.71 6.16 -51.93 -0.32 0.39 16 39 H 0.06 1.27 6.86 -51.93 -0.36 0.92 16 40 H 0.06 1.11 7.74 -51.93 -0.40 0.70 16 41 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 42 H 0.07 1.29 6.86 -51.93 -0.36 0.94 16 43 H 0.04 0.59 6.09 -51.93 -0.32 0.28 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.38 10.30 5.36 -40.82 -0.22 10.08 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -34.87 378.34 -6.86 -41.74 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.85 Total: 6.45 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 1.71 Total: 3.23 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.14 Total: -59.96 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.31 Total: -14.39 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.95 Total: -0.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.87 -6.86 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329341914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.356 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds