Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00578 * 2 1 4 4 C 1.50700 * 109.47342 * 180.02562 * 3 2 1 5 5 N 1.30939 * 122.90167 * 270.00082 * 4 3 2 6 6 C 1.29434 * 117.36181 * 179.97438 * 5 4 3 7 7 S 1.70951 * 110.39046 * 359.72615 * 6 5 4 8 8 C 1.35664 * 122.90310 * 89.99982 * 4 3 2 9 9 C 1.46683 * 126.13186 * 0.02562 * 8 4 3 10 10 O 1.21678 * 119.99819 * 0.02562 * 9 8 4 11 11 N 1.34773 * 119.99852 * 180.02562 * 9 8 4 12 12 C 1.46498 * 120.00043 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47272 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47269 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.46953 * 305.00936 * 14 13 12 16 16 N 1.46505 * 109.46807 * 65.00478 * 14 13 12 17 17 C 1.36931 * 119.99788 * 205.00000 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.52996 * 109.47332 * 185.00423 * 14 13 12 26 26 C 1.52998 * 109.47178 * 60.00127 * 25 14 13 27 27 C 1.52998 * 109.47309 * 180.02562 * 25 14 13 28 28 H 1.08994 * 109.47627 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46989 * 300.00422 * 1 2 3 30 30 H 1.09004 * 109.46686 * 59.99403 * 1 2 3 31 31 H 1.08997 * 109.46988 * 59.99993 * 3 2 1 32 32 H 1.09000 * 109.47285 * 299.99834 * 3 2 1 33 33 H 1.08005 * 124.80104 * 179.97438 * 6 5 4 34 34 H 0.97004 * 120.00109 * 359.97438 * 11 9 8 35 35 H 1.09000 * 109.46784 * 60.00269 * 12 11 9 36 36 H 1.08992 * 109.47427 * 300.00334 * 12 11 9 37 37 H 1.09000 * 109.46766 * 60.00541 * 13 12 11 38 38 H 1.08992 * 109.47398 * 300.00634 * 13 12 11 39 39 H 0.97000 * 119.99792 * 24.99795 * 16 14 13 40 40 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.46807 * 300.00318 * 25 14 13 42 42 H 1.09000 * 109.46863 * 59.99636 * 26 25 14 43 43 H 1.08994 * 109.47323 * 180.02562 * 26 25 14 44 44 H 1.08998 * 109.47238 * 300.00077 * 26 25 14 45 45 H 1.09003 * 109.47086 * 59.99982 * 27 25 14 46 46 H 1.08994 * 109.46999 * 179.97438 * 27 25 14 47 47 H 1.09000 * 109.46698 * 300.00343 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2221 1.1298 1.0984 6 6 5.5063 1.0275 0.9729 7 16 5.9417 0.9850 -0.6796 8 6 4.2468 1.1282 -1.1400 9 6 3.7231 1.1705 -2.5095 10 8 2.5252 1.2664 -2.7000 11 7 4.5688 1.1030 -3.5567 12 6 4.0457 1.1446 -4.9245 13 6 5.2062 1.0527 -5.9173 14 6 4.6600 1.0968 -7.3459 15 1 3.9148 0.3118 -7.4743 16 7 4.0418 2.4020 -7.5921 17 6 3.0667 2.5288 -8.5451 18 1 2.7530 1.6666 -9.1149 19 6 2.4769 3.7643 -8.7744 20 7 2.8588 4.8149 -8.0797 21 14 1.1412 3.9358 -10.0691 22 1 -0.0006 3.0519 -9.7223 23 1 0.6788 5.3459 -10.1195 24 1 1.6842 3.5457 -11.3951 25 6 5.8054 0.8799 -8.3368 26 6 6.4510 -0.4831 -8.0796 27 6 5.2593 0.9246 -9.7653 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.6888 1.8463 0.8900 32 1 1.6888 1.8463 -0.8900 33 1 6.2036 0.9725 1.7959 34 1 5.5238 1.0269 -3.4047 35 1 3.5086 2.0803 -5.0797 36 1 3.3671 0.3060 -5.0796 37 1 5.7438 0.1172 -5.7623 38 1 5.8846 1.8915 -5.7620 39 1 4.3232 3.1763 -7.0801 40 1 2.4469 5.6784 -8.2403 41 1 6.5505 1.6650 -8.2082 42 1 5.7058 -1.2682 -8.2080 43 1 7.2672 -0.6375 -8.7852 44 1 6.8401 -0.5146 -7.0619 45 1 4.7996 1.8959 -9.9482 46 1 6.0753 0.7705 -10.4712 47 1 4.5138 0.1398 -9.8939 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331224765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = -30.897938 kcal Electronic energy + Delta-G solvation = -27526.403221 eV Core-core repulsion = 23643.594992 eV Total energy + Delta-G solvation = -3882.808228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.60117 -39.15234 -37.58989 -37.44115 -34.79752 -33.05760 -31.82192 -31.10244 -29.64764 -28.22788 -26.50077 -26.20261 -25.14873 -24.73943 -23.08565 -21.77916 -21.13431 -19.64187 -19.21333 -18.77814 -17.17447 -17.01390 -16.60847 -16.01598 -15.57213 -15.48877 -15.20579 -14.98559 -14.80242 -14.40460 -13.97363 -13.96402 -13.66996 -13.50420 -13.21986 -13.11315 -12.73400 -12.40511 -12.02065 -11.75352 -11.70495 -11.63160 -11.43051 -11.23943 -10.90529 -10.78013 -10.63022 -10.46656 -10.33224 -10.24644 -10.07667 -10.03612 -9.85297 -9.83533 -9.52863 -9.45166 -9.31077 -8.92974 -8.81592 -6.93527 -5.74739 -3.02388 -0.04986 0.86181 1.23287 2.13335 3.05628 3.10979 3.45415 3.50768 3.50972 3.66458 4.13820 4.60855 4.65896 4.71265 4.87445 5.17791 5.21264 5.32634 5.34397 5.41077 5.46391 5.49680 5.54028 5.63607 5.68610 5.69912 5.79257 5.89300 5.98864 6.15591 6.20423 6.26008 6.35716 6.38947 6.49861 6.63189 6.66513 6.69799 6.82019 7.03829 7.11738 7.26259 7.33155 7.47113 7.73046 8.14830 8.43378 9.54967 10.11227 10.46112 11.47638 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.002849 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.522269 B = 9823.950636 C =11329.538233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.128 3.872 4 C 0.135 3.865 5 N -0.462 5.462 6 C 0.030 3.970 7 S 0.170 5.830 8 C -0.262 4.262 9 C 0.590 3.410 10 O -0.511 6.511 11 N -0.720 5.720 12 C 0.123 3.877 13 C -0.137 4.137 14 C 0.186 3.814 15 H 0.050 0.950 16 N -0.721 5.721 17 C -0.233 4.233 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.901 3.099 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.111 4.111 26 C -0.147 4.147 27 C -0.141 4.141 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.208 0.792 34 H 0.393 0.607 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.049 0.951 45 H 0.086 0.914 46 H 0.029 0.971 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 -9.770 16.803 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.049 3.951 4 C -0.003 4.003 5 N -0.176 5.176 6 C -0.266 4.266 7 S 0.425 5.575 8 C -0.387 4.387 9 C 0.373 3.627 10 O -0.388 6.388 11 N -0.370 5.370 12 C 0.001 3.999 13 C -0.176 4.176 14 C 0.076 3.924 15 H 0.068 0.932 16 N -0.362 5.362 17 C -0.364 4.364 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.132 4.132 26 C -0.205 4.205 27 C -0.198 4.198 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.224 0.776 34 H 0.227 0.773 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.048 0.952 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.055 -9.937 16.538 20.908 hybrid contribution -1.008 0.660 -0.341 1.252 sum 7.048 -9.277 16.197 19.952 Atomic orbital electron populations 1.22732 0.80356 1.02764 1.00279 1.87862 1.20081 1.26445 1.95544 1.21042 0.85023 0.86260 1.02795 1.20243 0.97260 0.97515 0.85244 1.66027 1.04951 1.15426 1.31153 1.28685 0.95180 1.02352 1.00348 1.83913 1.05552 1.64514 1.03560 1.25758 0.96511 1.16888 0.99524 1.16628 0.86357 0.77462 0.82224 1.90830 1.14323 1.48996 1.84609 1.46026 1.09556 1.74497 1.06967 1.21543 0.96868 1.04052 0.77453 1.22152 0.97284 1.01774 0.96358 1.20175 0.92737 0.90292 0.89241 0.93248 1.42435 1.44144 1.04816 1.44797 1.19145 1.11311 0.94096 1.11820 0.91085 1.24699 1.00183 0.95927 0.99987 1.69638 1.45419 0.99589 1.43365 0.86357 0.82190 0.76644 0.81565 1.21304 1.21826 1.21341 1.21770 0.98520 0.95473 0.97468 1.21938 0.99950 0.98204 1.00393 1.21831 0.99157 1.04003 0.94788 0.89617 0.94188 0.93311 0.91838 0.88656 0.77581 0.77299 0.89310 0.91407 0.91442 0.91559 0.78315 0.93557 0.92197 0.93261 0.93809 0.93229 0.89473 0.95215 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.54 10.69 -35.23 -0.38 -5.92 16 3 C 0.13 1.76 5.75 36.01 0.21 1.96 16 4 C 0.14 1.85 6.42 -83.89 -0.54 1.31 16 5 N -0.46 -5.59 10.50 -11.53 -0.12 -5.71 16 6 C 0.03 0.25 12.22 51.75 0.63 0.89 16 7 S 0.17 1.43 22.35 -107.50 -2.40 -0.98 16 8 C -0.26 -3.43 6.48 -37.09 -0.24 -3.67 16 9 C 0.59 9.16 7.78 -12.85 -0.10 9.06 16 10 O -0.51 -9.69 14.27 5.21 0.07 -9.62 16 11 N -0.72 -9.85 5.55 -61.62 -0.34 -10.19 16 12 C 0.12 1.98 5.56 -4.04 -0.02 1.96 16 13 C -0.14 -2.00 4.65 -26.73 -0.12 -2.13 16 14 C 0.19 3.37 2.02 -67.93 -0.14 3.23 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 N -0.72 -16.64 4.45 -53.42 -0.24 -16.87 16 17 C -0.23 -6.07 7.57 -15.06 -0.11 -6.18 16 18 H 0.07 1.82 7.40 -52.49 -0.39 1.43 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 21 Si 0.90 22.14 29.55 -169.99 -5.02 17.11 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.11 -1.84 2.69 -90.62 -0.24 -2.08 16 26 C -0.15 -1.95 8.85 37.16 0.33 -1.62 16 27 C -0.14 -2.54 8.26 37.16 0.31 -2.23 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.43 6.00 -51.93 -0.31 1.12 16 33 H 0.21 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.39 4.20 7.66 -40.82 -0.31 3.89 16 35 H 0.09 1.77 7.75 -51.93 -0.40 1.36 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.82 6.18 -51.93 -0.32 0.50 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.38 9.56 7.80 -40.82 -0.32 9.24 16 40 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.58 6.32 -51.93 -0.33 0.25 16 45 H 0.09 1.88 6.01 -51.93 -0.31 1.57 16 46 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -32.59 395.62 -8.09 -40.68 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.32 Total: 10.66 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 0.97 Total: 1.57 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.02 Total: -59.48 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.30 Total: -15.53 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.40 Total: -0.98 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.59 -8.09 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331224765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.785 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds