Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00578 * 2 1 4 4 C 1.50700 * 109.47342 * 180.02562 * 3 2 1 5 5 N 1.30939 * 122.90167 * 270.00082 * 4 3 2 6 6 C 1.29434 * 117.36181 * 179.97438 * 5 4 3 7 7 S 1.70951 * 110.39046 * 359.72615 * 6 5 4 8 8 C 1.35664 * 122.90310 * 89.99982 * 4 3 2 9 9 C 1.46683 * 126.13186 * 0.02562 * 8 4 3 10 10 O 1.21678 * 119.99819 * 0.02562 * 9 8 4 11 11 N 1.34773 * 119.99852 * 180.02562 * 9 8 4 12 12 C 1.46498 * 120.00043 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47272 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47269 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.46953 * 305.00936 * 14 13 12 16 16 N 1.46505 * 109.46807 * 65.00478 * 14 13 12 17 17 C 1.36931 * 119.99788 * 205.00000 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.52996 * 109.47332 * 185.00423 * 14 13 12 26 26 C 1.52998 * 109.47178 * 60.00127 * 25 14 13 27 27 C 1.52998 * 109.47309 * 180.02562 * 25 14 13 28 28 H 1.08994 * 109.47627 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46989 * 300.00422 * 1 2 3 30 30 H 1.09004 * 109.46686 * 59.99403 * 1 2 3 31 31 H 1.08997 * 109.46988 * 59.99993 * 3 2 1 32 32 H 1.09000 * 109.47285 * 299.99834 * 3 2 1 33 33 H 1.08005 * 124.80104 * 179.97438 * 6 5 4 34 34 H 0.97004 * 120.00109 * 359.97438 * 11 9 8 35 35 H 1.09000 * 109.46784 * 60.00269 * 12 11 9 36 36 H 1.08992 * 109.47427 * 300.00334 * 12 11 9 37 37 H 1.09000 * 109.46766 * 60.00541 * 13 12 11 38 38 H 1.08992 * 109.47398 * 300.00634 * 13 12 11 39 39 H 0.97000 * 119.99792 * 24.99795 * 16 14 13 40 40 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.46807 * 300.00318 * 25 14 13 42 42 H 1.09000 * 109.46863 * 59.99636 * 26 25 14 43 43 H 1.08994 * 109.47323 * 180.02562 * 26 25 14 44 44 H 1.08998 * 109.47238 * 300.00077 * 26 25 14 45 45 H 1.09003 * 109.47086 * 59.99982 * 27 25 14 46 46 H 1.08994 * 109.46999 * 179.97438 * 27 25 14 47 47 H 1.09000 * 109.46698 * 300.00343 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2221 1.1298 1.0984 6 6 5.5063 1.0275 0.9729 7 16 5.9417 0.9850 -0.6796 8 6 4.2468 1.1282 -1.1400 9 6 3.7231 1.1705 -2.5095 10 8 2.5252 1.2664 -2.7000 11 7 4.5688 1.1030 -3.5567 12 6 4.0457 1.1446 -4.9245 13 6 5.2062 1.0527 -5.9173 14 6 4.6600 1.0968 -7.3459 15 1 3.9148 0.3118 -7.4743 16 7 4.0418 2.4020 -7.5921 17 6 3.0667 2.5288 -8.5451 18 1 2.7530 1.6666 -9.1149 19 6 2.4769 3.7643 -8.7744 20 7 2.8588 4.8149 -8.0797 21 14 1.1412 3.9358 -10.0691 22 1 -0.0006 3.0519 -9.7223 23 1 0.6788 5.3459 -10.1195 24 1 1.6842 3.5457 -11.3951 25 6 5.8054 0.8799 -8.3368 26 6 6.4510 -0.4831 -8.0796 27 6 5.2593 0.9246 -9.7653 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.6888 1.8463 0.8900 32 1 1.6888 1.8463 -0.8900 33 1 6.2036 0.9725 1.7959 34 1 5.5238 1.0269 -3.4047 35 1 3.5086 2.0803 -5.0797 36 1 3.3671 0.3060 -5.0796 37 1 5.7438 0.1172 -5.7623 38 1 5.8846 1.8915 -5.7620 39 1 4.3232 3.1763 -7.0801 40 1 2.4469 5.6784 -8.2403 41 1 6.5505 1.6650 -8.2082 42 1 5.7058 -1.2682 -8.2080 43 1 7.2672 -0.6375 -8.7852 44 1 6.8401 -0.5146 -7.0619 45 1 4.7996 1.8959 -9.9482 46 1 6.0753 0.7705 -10.4712 47 1 4.5138 0.1398 -9.8939 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331224765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = -55.302699 kcal Electronic energy + Delta-G solvation = -27527.461491 eV Core-core repulsion = 23643.594992 eV Total energy + Delta-G solvation = -3883.866498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.57281 -40.28079 -38.92702 -38.56744 -36.11853 -34.89252 -32.97586 -32.38270 -31.28407 -29.30373 -27.68406 -27.26453 -26.64481 -25.60703 -24.80619 -22.98506 -22.45889 -20.78440 -20.52653 -19.68783 -19.07181 -18.02464 -17.62120 -17.18350 -16.95146 -16.56798 -16.48711 -16.16870 -15.76749 -15.73827 -15.37817 -15.27399 -15.02932 -14.87534 -14.57025 -14.33254 -13.97059 -13.50619 -13.36747 -13.19145 -12.90634 -12.82617 -12.66401 -12.56840 -12.49490 -12.36715 -12.18210 -12.01888 -11.92872 -11.70675 -11.45545 -11.28914 -11.16724 -10.87740 -10.76582 -10.71722 -10.59556 -10.21268 -10.03926 -8.89053 -7.87096 -5.11381 -0.89959 0.08055 0.46748 1.25340 1.47098 1.48838 1.53876 1.92671 1.96337 2.60165 2.81194 3.29408 3.46158 3.64518 3.84813 3.90005 3.94270 4.05867 4.17738 4.28432 4.33087 4.41265 4.44688 4.50214 4.53707 4.56493 4.68836 4.78339 4.81069 4.81216 4.87902 4.98530 5.05005 5.13797 5.24175 5.25181 5.33889 5.39877 5.46847 5.59605 5.72926 5.82081 6.06593 6.31560 6.35403 6.50436 7.01933 7.42339 8.19458 8.41213 9.36318 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.002849 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.522269 B = 9823.950636 C =11329.538233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.403 6.403 3 C 0.126 3.874 4 C 0.126 3.874 5 N -0.493 5.493 6 C 0.044 3.956 7 S 0.251 5.749 8 C -0.305 4.305 9 C 0.585 3.415 10 O -0.558 6.558 11 N -0.706 5.706 12 C 0.135 3.865 13 C -0.122 4.122 14 C 0.180 3.820 15 H 0.039 0.961 16 N -0.730 5.730 17 C -0.212 4.212 18 H 0.074 0.926 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.955 3.045 22 H -0.285 1.285 23 H -0.301 1.301 24 H -0.278 1.278 25 C -0.105 4.105 26 C -0.139 4.139 27 C -0.139 4.139 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.254 0.746 34 H 0.411 0.589 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.371 0.629 40 H 0.246 0.754 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.050 0.950 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.189 -11.940 18.061 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.322 6.322 3 C 0.047 3.953 4 C -0.013 4.013 5 N -0.207 5.207 6 C -0.250 4.250 7 S 0.507 5.493 8 C -0.430 4.430 9 C 0.371 3.629 10 O -0.438 6.438 11 N -0.357 5.357 12 C 0.012 3.988 13 C -0.160 4.160 14 C 0.071 3.929 15 H 0.058 0.942 16 N -0.369 5.369 17 C -0.344 4.344 18 H 0.092 0.908 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.786 3.214 22 H -0.211 1.211 23 H -0.228 1.228 24 H -0.205 1.205 25 C -0.126 4.126 26 C -0.197 4.197 27 C -0.196 4.196 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.270 0.730 34 H 0.248 0.752 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.203 0.797 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.131 -12.172 17.787 24.258 hybrid contribution -1.825 1.231 -0.664 2.299 sum 9.306 -10.941 17.123 22.350 Atomic orbital electron populations 1.22907 0.78969 1.03983 1.00719 1.87815 1.21789 1.27004 1.95625 1.20986 0.86102 0.85987 1.02178 1.20292 0.97270 0.97639 0.86138 1.66071 1.06477 1.17567 1.30592 1.29551 0.94665 0.98760 1.02016 1.83555 1.00752 1.62573 1.02416 1.25565 1.00109 1.19473 0.97846 1.17044 0.85924 0.76412 0.83516 1.90802 1.16420 1.51014 1.85596 1.45777 1.10330 1.73969 1.05668 1.21198 0.97223 1.01155 0.79271 1.22031 0.96581 1.04099 0.93282 1.20430 0.93073 0.87401 0.91994 0.94244 1.42606 1.43986 1.06440 1.43918 1.19438 1.10455 0.93677 1.10871 0.90833 1.25344 1.02902 0.96143 1.02500 1.69783 1.47183 0.99645 1.45525 0.85470 0.80095 0.75877 0.79978 1.21125 1.22752 1.20457 1.21631 0.97510 0.97820 0.95655 1.21859 1.00180 0.95401 1.02252 1.21768 0.99748 1.01511 0.96586 0.88031 0.92190 0.94407 0.90612 0.90982 0.73047 0.75219 0.93822 0.92641 0.87514 0.90789 0.79657 0.94555 0.92696 0.92939 0.92377 0.90945 0.93588 0.93127 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.40 -12.12 10.69 -148.98 -1.59 -13.72 16 3 C 0.13 3.64 5.75 71.24 0.41 4.05 16 4 C 0.13 3.42 6.42 42.10 0.27 3.69 16 5 N -0.49 -11.05 10.50 -190.40 -2.00 -13.05 16 6 C 0.04 0.58 12.22 130.60 1.60 2.18 16 7 S 0.25 3.38 22.35 -56.49 -1.26 2.12 16 8 C -0.30 -7.80 6.48 23.88 0.15 -7.64 16 9 C 0.59 18.63 7.78 86.45 0.67 19.30 16 10 O -0.56 -22.64 14.27 -4.28 -0.06 -22.70 16 11 N -0.71 -18.96 5.55 -467.11 -2.59 -21.55 16 12 C 0.13 4.40 5.56 86.38 0.48 4.88 16 13 C -0.12 -3.34 4.65 30.60 0.14 -3.20 16 14 C 0.18 6.37 2.02 44.99 0.09 6.46 16 15 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 16 N -0.73 -34.45 4.45 -322.93 -1.44 -35.89 16 17 C -0.21 -11.33 7.57 84.04 0.64 -10.70 16 18 H 0.07 3.82 7.40 -2.91 -0.02 3.80 16 19 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 20 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 21 Si 0.96 46.84 29.55 68.60 2.03 48.87 16 22 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 25 C -0.11 -3.27 2.69 -10.80 -0.03 -3.30 16 26 C -0.14 -3.12 8.85 71.98 0.64 -2.49 16 27 C -0.14 -4.86 8.26 71.98 0.59 -4.26 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 2.38 6.00 -2.39 -0.01 2.36 16 33 H 0.25 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.41 7.84 7.66 -92.71 -0.71 7.13 16 35 H 0.04 1.84 7.75 -2.39 -0.02 1.82 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.11 2.15 6.18 -2.39 -0.01 2.13 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.37 19.18 7.80 -92.71 -0.72 18.46 16 40 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.31 6.32 -2.39 -0.02 1.29 16 45 H 0.05 1.98 6.01 -2.39 -0.01 1.97 16 46 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.33 395.62 0.30 -76.03 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.44 Total: 32.00 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 7.37 Total: 6.97 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.75 Total: -129.58 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -1.65 Total: -36.42 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.26 Total: 2.12 kcal Total: -76.33 0.30 -76.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331224765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.732 kcal (2) G-P(sol) polarization free energy of solvation -76.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds