Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 120.00123 * 2 1 4 4 N 1.46899 * 109.46923 * 124.39536 * 3 2 1 5 5 C 1.46907 * 110.99847 * 195.33208 * 4 3 2 6 6 C 1.50697 * 109.46945 * 66.04455 * 5 4 3 7 7 H 1.08007 * 120.00331 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99797 * 179.72370 * 6 5 4 9 9 N 1.31513 * 119.99816 * 0.27685 * 8 6 5 10 10 Si 1.86802 * 119.99705 * 180.27946 * 8 6 5 11 11 H 1.48500 * 109.47491 * 60.00029 * 10 8 6 12 12 H 1.48506 * 109.46881 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46966 * 299.99832 * 10 8 6 14 14 C 1.38378 * 111.00243 * 71.38200 * 4 3 2 15 15 N 1.31471 * 126.44116 * 62.17690 * 14 4 3 16 16 N 1.28429 * 110.51116 * 179.97438 * 15 14 4 17 17 N 1.28918 * 110.31241 * 359.97438 * 16 15 14 18 18 N 1.35313 * 126.43949 * 241.87083 * 14 4 3 19 19 C 1.46504 * 127.38047 * 359.97438 * 18 14 4 20 20 H 1.09002 * 109.43220 * 357.51580 * 19 18 14 21 21 C 1.53068 * 109.43337 * 117.37962 * 19 18 14 22 22 C 1.53403 * 108.30653 * 168.24214 * 21 19 18 23 23 O 1.42828 * 108.37788 * 295.29735 * 22 21 19 24 24 C 1.35844 * 117.84845 * 49.22710 * 23 22 21 25 25 C 1.39146 * 118.49645 * 162.97066 * 24 23 22 26 26 C 1.37967 * 120.21033 * 179.57306 * 25 24 23 27 27 C 1.38282 * 119.96109 * 0.02562 * 26 25 24 28 28 C 1.38101 * 119.98752 * 0.08217 * 27 26 25 29 29 C 1.38373 * 121.80441 * 342.69689 * 24 23 22 30 30 H 1.08003 * 120.00006 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.00456 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.00006 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47213 * 4.39502 * 3 2 1 34 34 H 1.08994 * 109.47169 * 244.39485 * 3 2 1 35 35 H 1.09001 * 109.46761 * 306.05033 * 5 4 3 36 36 H 1.09001 * 109.47163 * 186.04563 * 5 4 3 37 37 H 0.97000 * 119.99429 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.70224 * 287.94561 * 21 19 18 39 39 H 1.09002 * 109.69412 * 48.54083 * 21 19 18 40 40 H 1.09004 * 109.68915 * 175.57236 * 22 21 19 41 41 H 1.08997 * 109.71580 * 55.03635 * 22 21 19 42 42 H 1.07995 * 119.89240 * 359.55154 * 25 24 23 43 43 H 1.08004 * 120.01797 * 179.97438 * 26 25 24 44 44 H 1.08010 * 120.01056 * 180.02562 * 27 26 25 45 45 H 1.07998 * 119.84574 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9859 1.3380 1.1428 5 6 3.4651 2.7038 1.3935 6 6 2.3126 3.5669 1.8380 7 1 1.3230 3.1431 1.9260 8 6 2.5225 4.8961 2.1384 9 7 3.7275 5.4120 2.0317 10 14 1.0952 5.9640 2.6969 11 1 0.5143 5.4021 3.9427 12 1 1.5806 7.3436 2.9549 13 1 0.0560 5.9956 1.6365 14 6 4.0449 0.4683 0.9505 15 7 4.9424 0.5307 -0.0082 16 7 5.7880 -0.4295 0.1039 17 7 5.4996 -1.1630 1.1240 18 7 4.3549 -0.6027 1.7173 19 6 3.6483 -1.0773 2.9096 20 1 2.8247 -0.4002 3.1367 21 6 3.0956 -2.4807 2.6492 22 6 2.6262 -3.0694 3.9858 23 8 3.7655 -3.2296 4.8322 24 6 4.6082 -2.1729 4.9688 25 6 5.5004 -2.1690 6.0365 26 6 6.3781 -1.1178 6.2040 27 6 6.3719 -0.0637 5.3089 28 6 5.4863 -0.0632 4.2492 29 6 4.6025 -1.1155 4.0763 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5401 -0.9353 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3578 2.1321 0.0788 34 1 2.6298 1.3977 -0.9267 35 1 3.8930 3.1124 0.4780 36 1 4.2265 2.6844 2.1733 37 1 3.8750 6.3472 2.2427 38 1 2.2547 -2.4221 1.9581 39 1 3.8775 -3.1105 2.2248 40 1 2.1561 -4.0380 3.8156 41 1 1.9124 -2.3925 4.4553 42 1 5.5055 -2.9913 6.7366 43 1 7.0690 -1.1177 7.0341 44 1 7.0590 0.7594 5.4390 45 1 5.4838 0.7610 3.5513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332537895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = 144.835660 kcal Electronic energy + Delta-G solvation = -30568.157026 eV Core-core repulsion = 26589.817978 eV Total energy + Delta-G solvation = -3978.339048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64373 -40.79990 -37.62017 -37.60804 -35.94309 -33.56544 -32.77641 -32.04758 -30.78095 -30.65587 -30.25850 -27.38700 -26.26794 -25.32295 -24.07365 -23.15262 -22.86329 -22.16775 -20.79649 -20.09420 -19.58536 -18.16250 -17.30986 -16.87110 -16.45766 -16.40260 -15.85317 -15.70252 -15.14664 -15.02521 -14.70145 -14.45561 -14.04510 -13.89838 -13.79569 -13.53159 -13.10495 -12.98279 -12.84770 -12.43379 -12.32926 -12.03825 -11.91743 -11.71794 -11.51846 -11.47708 -11.11255 -11.02733 -10.98488 -10.79935 -10.65524 -10.55704 -10.31813 -10.17129 -9.79617 -9.45615 -9.26962 -8.94427 -8.69535 -8.29281 -8.14583 -6.23232 -4.28654 1.10189 1.34808 1.36316 2.03786 2.42653 2.70649 3.07075 3.21536 3.27322 3.28266 3.66832 4.05655 4.16253 4.30456 4.34756 4.42186 4.76833 4.81780 4.88886 4.98831 5.03929 5.12479 5.16810 5.18027 5.23891 5.31908 5.35482 5.38461 5.58206 5.64109 5.80162 5.85621 5.86600 5.90530 5.98208 6.16570 6.17641 6.30878 6.40329 6.49632 6.65659 6.71218 6.85089 6.91489 7.01505 7.25821 7.43804 7.48227 7.81427 8.10295 8.75639 8.90060 9.36530 10.87109 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.004411 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.476745 B = 6346.169969 C = 7234.294151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.091 3.909 4 N -0.467 5.467 5 C 0.207 3.793 6 C -0.522 4.522 7 H 0.069 0.931 8 C 0.063 3.937 9 N -0.889 5.889 10 Si 0.903 3.097 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.439 3.561 15 N -0.355 5.355 16 N -0.045 5.045 17 N -0.091 5.091 18 N -0.365 5.365 19 C 0.210 3.790 20 H 0.135 0.865 21 C -0.168 4.168 22 C 0.069 3.931 23 O -0.314 6.314 24 C 0.149 3.851 25 C -0.154 4.154 26 C -0.077 4.077 27 C -0.149 4.149 28 C -0.055 4.055 29 C -0.174 4.174 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 -15.229 5.507 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.167 4.167 3 C -0.035 4.035 4 N -0.196 5.196 5 C 0.084 3.916 6 C -0.560 4.560 7 H 0.087 0.913 8 C -0.140 4.140 9 N -0.527 5.527 10 Si 0.730 3.270 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.073 3.927 15 N -0.211 5.211 16 N -0.041 5.041 17 N -0.078 5.078 18 N -0.163 5.163 19 C 0.107 3.893 20 H 0.152 0.848 21 C -0.207 4.207 22 C -0.007 4.007 23 O -0.228 6.228 24 C 0.103 3.897 25 C -0.172 4.172 26 C -0.095 4.095 27 C -0.167 4.167 28 C -0.074 4.074 29 C -0.175 4.175 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.091 0.909 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.982 -15.812 5.328 16.803 hybrid contribution -1.028 1.276 0.137 1.644 sum -3.009 -14.536 5.464 15.818 Atomic orbital electron populations 1.23773 0.95570 1.01785 1.00789 1.22910 0.96159 0.97910 0.99728 1.21370 0.95007 0.96509 0.90644 1.59594 1.09591 1.11015 1.39375 1.19939 0.96798 0.77719 0.97182 1.20935 0.94585 0.93737 1.46744 0.91322 1.24959 0.96037 0.97804 0.95213 1.69949 1.20741 1.14317 1.47660 0.86485 0.81978 0.79250 0.79303 1.20042 1.21170 1.19986 1.23651 0.93481 0.88585 0.86986 1.75011 1.04485 1.18559 1.23061 1.77903 1.17038 0.99438 1.09735 1.82498 0.99128 1.19312 1.06825 1.51606 1.21692 1.20728 1.22300 1.20162 0.92740 0.97323 0.79060 0.84777 1.22625 1.03327 0.95322 0.99414 1.22958 0.86356 1.03117 0.88242 1.85987 1.35621 1.35548 1.65683 1.18561 0.91539 0.85908 0.93685 1.20534 0.98264 1.00824 0.97598 1.20973 0.97184 0.92840 0.98517 1.21045 1.00379 0.99557 0.95704 1.20906 0.93216 0.96333 0.96909 1.19647 1.02594 0.97430 0.97872 0.87948 0.88858 0.89014 0.86894 0.92471 0.96354 0.94991 0.92401 0.88803 0.88919 0.86595 0.90885 0.85021 0.85210 0.85530 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 14.32 29.02 0.42 -1.81 16 2 C -0.15 -2.14 9.34 -36.02 -0.34 -2.47 16 3 C 0.09 1.61 5.23 -4.97 -0.03 1.58 16 4 N -0.47 -9.22 4.23 -177.59 -0.75 -9.98 16 5 C 0.21 4.98 4.64 -4.97 -0.02 4.96 16 6 C -0.52 -13.14 8.29 -34.44 -0.29 -13.42 16 7 H 0.07 1.66 7.25 -52.48 -0.38 1.28 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -24.86 13.29 55.43 0.74 -24.13 16 10 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 14 C 0.44 8.50 5.85 -320.42 -1.87 6.63 16 15 N -0.35 -7.49 11.96 30.10 0.36 -7.13 16 16 N -0.05 -0.92 13.38 60.35 0.81 -0.11 16 17 N -0.09 -1.70 13.84 60.35 0.84 -0.87 16 18 N -0.37 -6.28 2.54 -56.41 -0.14 -6.42 16 19 C 0.21 3.01 3.17 -69.01 -0.22 2.79 16 20 H 0.13 1.97 7.84 -51.93 -0.41 1.56 16 21 C -0.17 -1.86 5.79 -26.49 -0.15 -2.01 16 22 C 0.07 0.63 7.03 37.37 0.26 0.89 16 23 O -0.31 -3.74 10.27 -19.25 -0.20 -3.94 16 24 C 0.15 1.98 6.47 -39.19 -0.25 1.72 16 25 C -0.15 -1.82 9.94 -39.34 -0.39 -2.21 16 26 C -0.08 -0.88 10.04 -39.66 -0.40 -1.28 16 27 C -0.15 -2.01 10.04 -39.62 -0.40 -2.41 16 28 C -0.06 -0.88 9.27 -39.53 -0.37 -1.24 16 29 C -0.17 -2.55 5.49 -104.44 -0.57 -3.13 16 30 H 0.10 1.24 7.84 -52.48 -0.41 0.83 16 31 H 0.09 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.09 1.31 7.93 -52.48 -0.42 0.89 16 33 H 0.11 2.07 6.24 -51.93 -0.32 1.74 16 34 H 0.06 1.06 7.86 -51.93 -0.41 0.65 16 35 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.03 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 45 H 0.12 2.20 7.69 -52.49 -0.40 1.79 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -29.54 382.65 -8.43 -37.97 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.11 Total: 3.65 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -4.72 Total: -9.86 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 1.84 Total: -48.63 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.20 Total: -3.94 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.54 -8.43 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332537895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.808 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds