Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00235 * 2 1 4 4 N 1.46901 * 109.46734 * 124.70877 * 3 2 1 5 5 C 1.46908 * 110.99420 * 199.86951 * 4 3 2 6 6 C 1.50698 * 109.46903 * 66.05039 * 5 4 3 7 7 H 1.07999 * 120.00296 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99680 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00017 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99878 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47079 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46955 * 120.00233 * 10 8 6 13 13 H 1.48499 * 109.47173 * 239.99999 * 10 8 6 14 14 C 1.38372 * 110.99861 * 75.91952 * 4 3 2 15 15 N 1.31478 * 126.44435 * 39.15343 * 14 4 3 16 16 N 1.28416 * 110.51099 * 179.97438 * 15 14 4 17 17 N 1.28908 * 110.31745 * 359.97438 * 16 15 14 18 18 N 1.35315 * 126.44019 * 219.15005 * 14 4 3 19 19 C 1.46502 * 127.37719 * 359.73633 * 18 14 4 20 20 H 1.09005 * 109.43738 * 356.79568 * 19 18 14 21 21 C 1.53069 * 109.43810 * 236.87421 * 19 18 14 22 22 C 1.53417 * 108.29198 * 191.74608 * 21 19 18 23 23 O 1.42829 * 108.36798 * 64.74943 * 22 21 19 24 24 C 1.35847 * 117.85946 * 310.84857 * 23 22 21 25 25 C 1.39152 * 118.50023 * 197.02044 * 24 23 22 26 26 C 1.37965 * 120.21769 * 180.17970 * 25 24 23 27 27 C 1.38290 * 119.95938 * 0.02562 * 26 25 24 28 28 C 1.38102 * 119.98056 * 359.91625 * 27 26 25 29 29 C 1.38313 * 121.79496 * 17.11474 * 24 23 22 30 30 H 1.07993 * 120.00367 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99369 * 359.97438 * 1 2 3 32 32 H 1.08007 * 119.99458 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47196 * 4.70851 * 3 2 1 34 34 H 1.08999 * 109.46723 * 244.70967 * 3 2 1 35 35 H 1.09004 * 109.46834 * 186.04888 * 5 4 3 36 36 H 1.08999 * 109.47022 * 306.04358 * 5 4 3 37 37 H 0.97010 * 120.00049 * 179.97438 * 9 8 6 38 38 H 1.08993 * 109.70292 * 311.44827 * 21 19 18 39 39 H 1.09003 * 109.69999 * 72.00885 * 21 19 18 40 40 H 1.09000 * 109.68512 * 184.46847 * 22 21 19 41 41 H 1.08998 * 109.68466 * 304.99226 * 22 21 19 42 42 H 1.08003 * 119.88650 * 0.16057 * 25 24 23 43 43 H 1.08003 * 120.02051 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00419 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.83761 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9914 1.3347 1.1386 5 6 3.3880 2.7125 1.4586 6 6 2.1884 3.4785 1.9536 7 1 1.2273 2.9908 2.0232 8 6 2.3178 4.8020 2.3178 9 7 3.4880 5.3961 2.2326 10 14 0.8306 5.7517 2.9308 11 1 -0.3586 4.8624 2.9321 12 1 1.0872 6.2364 4.3108 13 1 0.5811 6.9113 2.0373 14 6 4.1000 0.5432 0.8955 15 7 4.7378 0.4222 -0.2478 16 7 5.7235 -0.3923 -0.1292 17 7 5.7884 -0.8438 1.0764 18 7 4.7317 -0.2518 1.7899 19 6 4.3919 -0.4475 3.2015 20 1 3.5575 0.2018 3.4671 21 6 5.6037 -0.1007 4.0700 22 6 5.3281 -0.5889 5.4981 23 8 5.2362 -2.0141 5.4766 24 6 4.4335 -2.5845 4.5408 25 6 4.0455 -3.9091 4.7171 26 6 3.2339 -4.5246 3.7866 27 6 2.8041 -3.8243 2.6742 28 6 3.1863 -2.5091 2.4966 29 6 4.0004 -1.8856 3.4285 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5399 0.9354 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3583 2.1318 0.0844 34 1 2.6254 1.4001 -0.9292 35 1 4.1554 2.6992 2.2326 36 1 3.7828 3.1940 0.5639 37 1 3.5790 6.3274 2.4884 38 1 6.4913 -0.5965 3.6771 39 1 5.7568 0.9785 4.0731 40 1 6.1431 -0.2834 6.1542 41 1 4.3899 -0.1653 5.8563 42 1 4.3811 -4.4572 5.5851 43 1 2.9350 -5.5530 3.9264 44 1 2.1691 -4.3055 1.9452 45 1 2.8490 -1.9643 1.6273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332537896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = 143.916605 kcal Electronic energy + Delta-G solvation = -30598.967452 eV Core-core repulsion = 26620.588551 eV Total energy + Delta-G solvation = -3978.378901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62595 -40.80067 -37.66550 -37.60696 -35.92673 -33.50898 -32.81505 -32.00050 -30.82248 -30.62222 -30.32622 -27.44912 -26.19400 -25.36452 -24.06763 -23.16259 -22.78899 -22.23608 -20.81672 -20.06084 -19.52176 -18.20530 -17.23578 -16.82262 -16.72336 -16.23205 -15.82890 -15.72080 -15.19859 -14.94825 -14.71019 -14.48922 -14.06412 -13.90361 -13.77692 -13.53424 -13.11455 -12.93403 -12.79770 -12.42631 -12.38089 -12.02255 -11.88032 -11.74505 -11.55531 -11.44945 -11.07275 -11.05823 -11.01498 -10.82188 -10.62732 -10.52141 -10.35282 -10.17593 -9.94390 -9.44014 -9.15416 -9.00577 -8.74432 -8.33182 -8.12084 -6.30278 -4.35594 1.05104 1.29043 1.39374 2.05609 2.53695 2.71363 3.09484 3.15858 3.24742 3.27898 3.60929 4.06316 4.18173 4.31368 4.35796 4.49138 4.73339 4.87648 4.92382 4.93278 5.06137 5.09687 5.16442 5.20878 5.28671 5.32307 5.35757 5.45664 5.61589 5.72987 5.81696 5.83679 5.91739 5.94296 6.07280 6.11753 6.21509 6.27832 6.37266 6.43246 6.59961 6.74813 6.85151 6.89187 7.02170 7.24935 7.39263 7.41154 7.74809 8.03306 8.70502 8.91751 9.30478 10.80135 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010476 B = 0.004220 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.253794 B = 6633.872015 C = 7202.146978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C 0.088 3.912 4 N -0.463 5.463 5 C 0.204 3.796 6 C -0.520 4.520 7 H 0.072 0.928 8 C 0.063 3.937 9 N -0.890 5.890 10 Si 0.903 3.097 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.440 3.560 15 N -0.363 5.363 16 N -0.043 5.043 17 N -0.093 5.093 18 N -0.368 5.368 19 C 0.210 3.790 20 H 0.136 0.864 21 C -0.171 4.171 22 C 0.069 3.931 23 O -0.314 6.314 24 C 0.152 3.848 25 C -0.153 4.153 26 C -0.078 4.078 27 C -0.153 4.153 28 C -0.059 4.059 29 C -0.171 4.171 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.016 0.984 37 H 0.266 0.734 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -14.645 5.281 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.160 4.160 3 C -0.038 4.038 4 N -0.190 5.190 5 C 0.081 3.919 6 C -0.559 4.559 7 H 0.090 0.910 8 C -0.140 4.140 9 N -0.528 5.528 10 Si 0.730 3.270 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.075 3.925 15 N -0.221 5.221 16 N -0.039 5.039 17 N -0.080 5.080 18 N -0.166 5.166 19 C 0.106 3.894 20 H 0.153 0.847 21 C -0.209 4.209 22 C -0.007 4.007 23 O -0.228 6.228 24 C 0.106 3.894 25 C -0.172 4.172 26 C -0.096 4.096 27 C -0.171 4.171 28 C -0.078 4.078 29 C -0.173 4.173 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.591 -15.211 5.042 16.036 hybrid contribution -0.947 1.367 0.309 1.691 sum -1.537 -13.844 5.351 14.922 Atomic orbital electron populations 1.23751 0.95626 1.01682 1.01181 1.22856 0.96008 0.97840 0.99326 1.21376 0.94819 0.96624 0.90979 1.59458 1.06771 1.14430 1.38317 1.19993 0.97823 0.77394 0.96688 1.21019 0.94954 0.95152 1.44762 0.91023 1.24966 0.96347 0.97406 0.95295 1.69963 1.23150 1.12449 1.47241 0.86360 0.82356 0.79804 0.78498 1.19400 1.20836 1.20795 1.23652 0.91858 0.92133 0.84882 1.74925 1.06220 1.18920 1.22007 1.77846 1.11354 1.04782 1.09938 1.82467 1.06317 1.19218 0.99992 1.51465 1.22743 1.31391 1.11008 1.20187 0.99285 0.94628 0.75259 0.84684 1.22632 0.98315 1.04488 0.95493 1.23001 1.03714 0.77758 0.96208 1.85987 1.62381 1.22571 1.51887 1.18591 0.90376 0.92533 0.87866 1.20559 1.01821 0.92998 1.01774 1.20955 0.95834 0.99580 0.93253 1.20988 1.02683 0.94499 0.98974 1.20878 0.94569 0.94835 0.97504 1.19709 1.04413 0.95890 0.97285 0.88911 0.88066 0.88961 0.87099 0.91628 0.94959 0.96627 0.92468 0.88808 0.88248 0.86392 0.90715 0.84970 0.85268 0.85788 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 14.32 29.01 0.42 -2.06 16 2 C -0.14 -2.19 9.43 -36.03 -0.34 -2.53 16 3 C 0.09 1.60 5.20 -4.98 -0.03 1.57 16 4 N -0.46 -9.12 4.20 -177.59 -0.75 -9.86 16 5 C 0.20 4.78 4.65 -4.97 -0.02 4.76 16 6 C -0.52 -12.83 8.23 -34.44 -0.28 -13.11 16 7 H 0.07 1.72 7.31 -52.49 -0.38 1.34 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -24.25 13.29 55.43 0.74 -23.51 16 10 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 11 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 C 0.44 8.55 6.30 -320.41 -2.02 6.53 16 15 N -0.36 -7.50 11.29 30.10 0.34 -7.16 16 16 N -0.04 -0.87 13.38 60.35 0.81 -0.07 16 17 N -0.09 -1.76 13.71 60.35 0.83 -0.93 16 18 N -0.37 -6.49 2.54 -56.41 -0.14 -6.64 16 19 C 0.21 3.15 3.17 -69.01 -0.22 2.94 16 20 H 0.14 2.12 7.84 -51.93 -0.41 1.71 16 21 C -0.17 -2.21 5.74 -26.48 -0.15 -2.36 16 22 C 0.07 0.72 7.03 37.37 0.26 0.98 16 23 O -0.31 -3.90 10.27 -19.26 -0.20 -4.10 16 24 C 0.15 2.00 6.47 -39.21 -0.25 1.75 16 25 C -0.15 -1.73 9.94 -39.34 -0.39 -2.12 16 26 C -0.08 -0.81 10.04 -39.66 -0.40 -1.21 16 27 C -0.15 -1.79 10.04 -39.61 -0.40 -2.19 16 28 C -0.06 -0.83 9.27 -39.51 -0.37 -1.20 16 29 C -0.17 -2.43 5.55 -104.44 -0.58 -3.01 16 30 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 32 H 0.09 1.43 7.16 -52.48 -0.38 1.06 16 33 H 0.11 2.07 6.23 -51.93 -0.32 1.75 16 34 H 0.07 1.23 7.34 -51.93 -0.38 0.85 16 35 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.09 1.30 8.00 -51.93 -0.42 0.88 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.12 1.79 6.81 -52.49 -0.36 1.44 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -28.69 380.05 -8.53 -37.21 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.99 Total: 4.43 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -4.87 Total: -9.74 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 1.82 Total: -48.17 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.20 Total: -4.10 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.69 -8.53 -37.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332537896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.130 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds