Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00235 * 2 1 4 4 N 1.46901 * 109.46734 * 124.70877 * 3 2 1 5 5 C 1.46908 * 110.99420 * 199.86951 * 4 3 2 6 6 C 1.50698 * 109.46903 * 66.05039 * 5 4 3 7 7 H 1.07999 * 120.00296 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99680 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00017 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99878 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47079 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46955 * 120.00233 * 10 8 6 13 13 H 1.48499 * 109.47173 * 239.99999 * 10 8 6 14 14 C 1.38372 * 110.99861 * 75.91952 * 4 3 2 15 15 N 1.31478 * 126.44435 * 39.15343 * 14 4 3 16 16 N 1.28416 * 110.51099 * 179.97438 * 15 14 4 17 17 N 1.28908 * 110.31745 * 359.97438 * 16 15 14 18 18 N 1.35315 * 126.44019 * 219.15005 * 14 4 3 19 19 C 1.46502 * 127.37719 * 359.73633 * 18 14 4 20 20 H 1.09005 * 109.43738 * 356.79568 * 19 18 14 21 21 C 1.53069 * 109.43810 * 236.87421 * 19 18 14 22 22 C 1.53417 * 108.29198 * 191.74608 * 21 19 18 23 23 O 1.42829 * 108.36798 * 64.74943 * 22 21 19 24 24 C 1.35847 * 117.85946 * 310.84857 * 23 22 21 25 25 C 1.39152 * 118.50023 * 197.02044 * 24 23 22 26 26 C 1.37965 * 120.21769 * 180.17970 * 25 24 23 27 27 C 1.38290 * 119.95938 * 0.02562 * 26 25 24 28 28 C 1.38102 * 119.98056 * 359.91625 * 27 26 25 29 29 C 1.38313 * 121.79496 * 17.11474 * 24 23 22 30 30 H 1.07993 * 120.00367 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99369 * 359.97438 * 1 2 3 32 32 H 1.08007 * 119.99458 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47196 * 4.70851 * 3 2 1 34 34 H 1.08999 * 109.46723 * 244.70967 * 3 2 1 35 35 H 1.09004 * 109.46834 * 186.04888 * 5 4 3 36 36 H 1.08999 * 109.47022 * 306.04358 * 5 4 3 37 37 H 0.97010 * 120.00049 * 179.97438 * 9 8 6 38 38 H 1.08993 * 109.70292 * 311.44827 * 21 19 18 39 39 H 1.09003 * 109.69999 * 72.00885 * 21 19 18 40 40 H 1.09000 * 109.68512 * 184.46847 * 22 21 19 41 41 H 1.08998 * 109.68466 * 304.99226 * 22 21 19 42 42 H 1.08003 * 119.88650 * 0.16057 * 25 24 23 43 43 H 1.08003 * 120.02051 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00419 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.83761 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9914 1.3347 1.1386 5 6 3.3880 2.7125 1.4586 6 6 2.1884 3.4785 1.9536 7 1 1.2273 2.9908 2.0232 8 6 2.3178 4.8020 2.3178 9 7 3.4880 5.3961 2.2326 10 14 0.8306 5.7517 2.9308 11 1 -0.3586 4.8624 2.9321 12 1 1.0872 6.2364 4.3108 13 1 0.5811 6.9113 2.0373 14 6 4.1000 0.5432 0.8955 15 7 4.7378 0.4222 -0.2478 16 7 5.7235 -0.3923 -0.1292 17 7 5.7884 -0.8438 1.0764 18 7 4.7317 -0.2518 1.7899 19 6 4.3919 -0.4475 3.2015 20 1 3.5575 0.2018 3.4671 21 6 5.6037 -0.1007 4.0700 22 6 5.3281 -0.5889 5.4981 23 8 5.2362 -2.0141 5.4766 24 6 4.4335 -2.5845 4.5408 25 6 4.0455 -3.9091 4.7171 26 6 3.2339 -4.5246 3.7866 27 6 2.8041 -3.8243 2.6742 28 6 3.1863 -2.5091 2.4966 29 6 4.0004 -1.8856 3.4285 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5399 0.9354 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3583 2.1318 0.0844 34 1 2.6254 1.4001 -0.9292 35 1 4.1554 2.6992 2.2326 36 1 3.7828 3.1940 0.5639 37 1 3.5790 6.3274 2.4884 38 1 6.4913 -0.5965 3.6771 39 1 5.7568 0.9785 4.0731 40 1 6.1431 -0.2834 6.1542 41 1 4.3899 -0.1653 5.8563 42 1 4.3811 -4.4572 5.5851 43 1 2.9350 -5.5530 3.9264 44 1 2.1691 -4.3055 1.9452 45 1 2.8490 -1.9643 1.6273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332537896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 129.244417 kcal Electronic energy + Delta-G solvation = -30599.603686 eV Core-core repulsion = 26620.588551 eV Total energy + Delta-G solvation = -3979.015135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.16905 -41.78991 -39.22844 -38.56003 -37.16562 -35.11433 -34.43901 -33.30016 -32.31368 -31.70793 -31.28001 -29.25765 -27.39261 -26.88393 -25.10307 -24.61918 -24.33326 -23.35197 -22.38308 -21.11507 -20.81456 -19.32714 -18.67673 -18.39493 -17.83011 -17.51516 -17.32295 -17.05656 -16.57965 -16.31560 -16.02804 -15.56157 -15.42849 -15.02532 -15.01273 -14.63235 -14.50824 -14.37921 -14.08214 -13.86489 -13.69733 -13.54867 -13.07846 -13.03933 -12.84641 -12.76336 -12.71451 -12.57733 -12.23052 -12.13668 -12.00223 -11.95773 -11.75791 -11.64895 -11.47143 -11.20644 -10.70443 -10.41842 -9.96785 -9.79249 -9.27235 -8.28046 -6.40191 -0.15838 0.04596 0.34711 0.69690 1.09262 1.34363 1.44089 1.46578 1.58710 2.20043 2.35612 2.63212 2.68995 3.01851 3.07965 3.28498 3.38717 3.49536 3.71337 3.76243 3.86776 4.00818 4.10100 4.14464 4.24776 4.28305 4.37789 4.43175 4.46315 4.48520 4.51901 4.62764 4.73241 4.77942 4.84091 4.90838 4.92791 5.02568 5.05450 5.19834 5.35758 5.47648 5.52430 5.61119 5.68957 5.73087 5.80466 5.87028 6.18283 6.31438 6.72413 7.30466 7.33489 8.83731 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010476 B = 0.004220 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.253794 B = 6633.872015 C = 7202.146978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.163 4.163 3 C 0.091 3.909 4 N -0.454 5.454 5 C 0.223 3.777 6 C -0.523 4.523 7 H 0.079 0.921 8 C 0.014 3.986 9 N -0.930 5.930 10 Si 0.971 3.029 11 H -0.256 1.256 12 H -0.280 1.280 13 H -0.282 1.282 14 C 0.432 3.568 15 N -0.381 5.381 16 N -0.058 5.058 17 N -0.089 5.089 18 N -0.353 5.353 19 C 0.202 3.798 20 H 0.124 0.876 21 C -0.167 4.167 22 C 0.073 3.927 23 O -0.318 6.318 24 C 0.140 3.860 25 C -0.153 4.153 26 C -0.067 4.067 27 C -0.155 4.155 28 C -0.081 4.081 29 C -0.188 4.188 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.009 0.991 36 H -0.020 1.020 37 H 0.267 0.733 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.083 0.917 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.144 0.856 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 -16.686 7.032 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.182 4.182 3 C -0.035 4.035 4 N -0.180 5.180 5 C 0.098 3.902 6 C -0.561 4.561 7 H 0.097 0.903 8 C -0.186 4.186 9 N -0.569 5.569 10 Si 0.795 3.205 11 H -0.180 1.180 12 H -0.206 1.206 13 H -0.208 1.208 14 C 0.066 3.934 15 N -0.238 5.238 16 N -0.054 5.054 17 N -0.076 5.076 18 N -0.151 5.151 19 C 0.100 3.900 20 H 0.142 0.858 21 C -0.205 4.205 22 C -0.002 4.002 23 O -0.231 6.231 24 C 0.094 3.906 25 C -0.171 4.171 26 C -0.085 4.085 27 C -0.173 4.173 28 C -0.100 4.100 29 C -0.190 4.190 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.028 0.972 36 H -0.002 1.002 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.166 0.834 41 H 0.102 0.898 42 H 0.174 0.826 43 H 0.185 0.815 44 H 0.162 0.838 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.524 -17.284 6.799 18.744 hybrid contribution -0.357 1.903 -0.227 1.950 sum -2.881 -15.381 6.571 16.972 Atomic orbital electron populations 1.24012 0.94700 1.03259 0.97291 1.22598 0.96627 0.96144 1.02833 1.21365 0.94269 0.98203 0.89652 1.59415 1.06918 1.12365 1.39346 1.19566 0.97011 0.79292 0.94283 1.21262 0.95288 0.95426 1.44116 0.90263 1.25838 0.99004 0.98405 0.95349 1.70093 1.25441 1.12843 1.48528 0.85297 0.79168 0.78288 0.77707 1.17966 1.20561 1.20802 1.23546 0.92070 0.92658 0.85138 1.74843 1.06644 1.19319 1.23026 1.77820 1.11644 1.05352 1.10535 1.82377 1.06462 1.18987 0.99767 1.51647 1.21545 1.30145 1.11744 1.20446 0.99856 0.95808 0.73855 0.85838 1.22621 0.96884 1.04067 0.96954 1.23178 1.05396 0.77020 0.94650 1.85983 1.62308 1.23256 1.51600 1.18835 0.90676 0.93377 0.87708 1.20957 1.01294 0.92225 1.02668 1.21389 0.94269 1.00985 0.91835 1.21278 1.02512 0.93528 0.99935 1.20875 0.95715 0.96132 0.97231 1.19640 1.05726 0.95192 0.98465 0.86059 0.87556 0.89207 0.87841 0.93066 0.97244 1.00174 0.92399 0.89773 0.88854 0.83363 0.89832 0.82622 0.81516 0.83827 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 14.32 67.78 0.97 -2.88 16 2 C -0.16 -5.02 9.43 25.64 0.24 -4.78 16 3 C 0.09 3.42 5.20 85.56 0.44 3.86 16 4 N -0.45 -18.74 4.20 -715.77 -3.00 -21.74 16 5 C 0.22 11.01 4.65 85.55 0.40 11.41 16 6 C -0.52 -26.28 8.23 25.60 0.21 -26.07 16 7 H 0.08 3.80 7.31 -2.91 -0.02 3.78 16 8 C 0.01 0.71 5.46 84.66 0.46 1.17 16 9 N -0.93 -51.99 13.29 21.45 0.28 -51.70 16 10 Si 0.97 40.17 29.54 68.60 2.03 42.20 16 11 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 12 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 14 C 0.43 17.65 6.30 260.65 1.64 19.29 16 15 N -0.38 -16.52 11.29 -58.70 -0.66 -17.19 16 16 N -0.06 -2.42 13.38 37.02 0.50 -1.93 16 17 N -0.09 -3.47 13.71 37.02 0.51 -2.97 16 18 N -0.35 -13.00 2.54 -332.39 -0.84 -13.84 16 19 C 0.20 6.28 3.17 44.29 0.14 6.42 16 20 H 0.12 4.07 7.84 -2.38 -0.02 4.06 16 21 C -0.17 -4.39 5.74 30.76 0.18 -4.21 16 22 C 0.07 1.43 7.03 72.12 0.51 1.94 16 23 O -0.32 -7.35 10.27 -91.83 -0.94 -8.29 16 24 C 0.14 3.48 6.47 22.51 0.15 3.62 16 25 C -0.15 -3.02 9.94 22.42 0.22 -2.79 16 26 C -0.07 -1.15 10.04 22.22 0.22 -0.93 16 27 C -0.15 -3.28 10.04 22.25 0.22 -3.06 16 28 C -0.08 -2.25 9.27 22.32 0.21 -2.04 16 29 C -0.19 -5.32 5.55 -19.75 -0.11 -5.43 16 30 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.11 2.56 7.84 -2.91 -0.02 2.54 16 32 H 0.09 2.82 7.16 -2.91 -0.02 2.80 16 33 H 0.10 3.97 6.23 -2.39 -0.01 3.95 16 34 H 0.05 2.03 7.34 -2.39 -0.02 2.01 16 35 H 0.01 0.51 8.05 -2.38 -0.02 0.49 16 36 H -0.02 -1.09 8.12 -2.39 -0.02 -1.11 16 37 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 38 H 0.08 2.37 8.00 -2.39 -0.02 2.35 16 39 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.10 3.05 6.81 -2.91 -0.02 3.03 16 Total: -1.00 -63.97 380.05 4.97 -58.99 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.00 Total: 20.95 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.11 Total: -4.48 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -3.22 Total: -109.37 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.94 Total: -8.29 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -63.97 4.97 -58.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332537896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.238 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds