Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47382 * 2 1 4 4 C 1.52998 * 109.47252 * 239.99948 * 2 1 3 5 5 O 1.45201 * 109.47344 * 119.99716 * 2 1 3 6 6 C 1.34230 * 116.99539 * 60.00417 * 5 2 1 7 7 O 1.20831 * 120.00464 * 359.97438 * 6 5 2 8 8 C 1.50702 * 119.99840 * 180.02562 * 6 5 2 9 9 C 1.50704 * 109.90031 * 84.06463 * 8 6 5 10 10 O 1.21277 * 120.00173 * 95.93122 * 9 8 6 11 11 N 1.34770 * 119.99560 * 275.93329 * 9 8 6 12 12 C 1.47075 * 136.06185 * 359.62716 * 11 9 8 13 13 C 1.53756 * 87.88689 * 152.96286 * 12 11 9 14 14 O 1.42894 * 114.57434 * 272.66086 * 13 12 11 15 15 C 1.50700 * 114.08385 * 139.78154 * 13 12 11 16 16 H 1.07999 * 120.00436 * 266.56218 * 15 13 12 17 17 C 1.37881 * 120.00242 * 86.55930 * 15 13 12 18 18 N 1.31517 * 120.00214 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 119.99650 * 0.02562 * 17 15 13 20 20 H 1.48496 * 109.47317 * 89.99724 * 19 17 15 21 21 H 1.48505 * 109.47160 * 210.00046 * 19 17 15 22 22 H 1.48502 * 109.47195 * 329.99504 * 19 17 15 23 23 C 1.47072 * 136.05579 * 179.97438 * 11 9 8 24 24 C 1.54388 * 109.82883 * 204.99640 * 8 6 5 25 25 C 1.55308 * 102.43740 * 140.97109 * 24 8 6 26 26 C 1.54952 * 100.93825 * 325.76522 * 25 24 8 27 27 O 1.43640 * 105.13916 * 36.44606 * 26 25 24 28 28 H 1.09005 * 109.46703 * 299.99944 * 1 2 3 29 29 H 1.08996 * 109.47228 * 59.99709 * 1 2 3 30 30 H 1.08994 * 109.46740 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47374 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46734 * 300.00623 * 3 2 1 33 33 H 1.09005 * 109.46709 * 60.00040 * 3 2 1 34 34 H 1.09003 * 109.47408 * 300.00107 * 4 2 1 35 35 H 1.09003 * 109.47091 * 60.00023 * 4 2 1 36 36 H 1.09001 * 109.47021 * 179.97438 * 4 2 1 37 37 H 1.08999 * 113.46434 * 267.70089 * 12 11 9 38 38 H 1.08996 * 113.46216 * 38.13644 * 12 11 9 39 39 H 0.96702 * 114.00246 * 273.67119 * 14 13 12 40 40 H 0.96994 * 119.99643 * 180.02562 * 18 17 15 41 41 H 1.08994 * 113.46842 * 321.86454 * 23 11 9 42 42 H 1.09000 * 113.46568 * 92.30423 * 23 11 9 43 43 H 1.09002 * 110.84891 * 22.67699 * 24 8 6 44 44 H 1.09001 * 110.84460 * 259.25892 * 24 8 6 45 45 H 1.09000 * 111.12817 * 83.68227 * 25 24 8 46 46 H 1.08998 * 111.12300 * 207.80930 * 25 24 8 47 47 H 1.08996 * 110.30547 * 155.36437 * 26 25 24 48 48 H 1.09000 * 110.30869 * 277.43002 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6534 -1.9684 1.3378 7 8 0.9560 -2.5026 0.5082 8 6 2.1175 -2.7434 2.5441 9 6 1.1957 -2.4820 3.7075 10 8 0.2892 -3.2510 3.9475 11 7 1.3790 -1.3937 4.4809 12 6 2.3277 -0.2706 4.5213 13 6 1.2242 0.5632 5.1929 14 8 0.3464 1.2298 4.2835 15 6 1.7165 1.4525 6.3055 16 1 1.6948 1.1020 7.3268 17 6 2.1947 2.7138 6.0197 18 7 2.6248 3.4897 6.9906 19 14 2.2317 3.3204 4.2533 20 1 0.9520 4.0046 3.9380 21 1 3.3579 4.2727 4.0804 22 1 2.4146 2.1660 3.3372 23 6 0.7218 -0.8097 5.6600 24 6 2.1376 -4.2529 2.2208 25 6 3.4260 -4.7325 2.9435 26 6 4.3386 -3.4921 2.7717 27 8 3.4603 -2.3614 2.8874 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 3.1878 -0.4520 5.1658 38 1 2.6098 0.0949 3.5339 39 1 0.6656 2.0945 3.9912 40 1 2.9609 4.3770 6.7895 41 1 -0.3640 -0.9033 5.6426 42 1 1.1583 -1.1332 6.6049 43 1 2.2112 -4.4185 1.1460 44 1 1.2567 -4.7487 2.6286 45 1 3.2332 -4.9355 3.9969 46 1 3.8517 -5.6057 2.4491 47 1 5.0938 -3.4665 3.5571 48 1 4.8139 -3.5051 1.7909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332559601.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = -149.222702 kcal Electronic energy + Delta-G solvation = -33662.072879 eV Core-core repulsion = 29299.088082 eV Total energy + Delta-G solvation = -4362.984797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.39809 -39.98810 -39.10604 -37.50294 -36.93577 -34.61260 -34.05845 -32.53927 -32.26225 -30.71255 -28.75033 -27.46195 -27.37925 -25.73921 -25.20238 -24.54389 -22.42572 -21.93099 -20.35229 -19.72989 -18.89682 -17.72601 -17.62374 -17.08404 -16.74969 -16.32139 -16.04653 -15.82777 -15.62344 -14.91540 -14.60894 -14.37617 -14.23339 -13.86291 -13.72227 -13.62323 -13.38061 -13.02764 -12.75096 -12.55473 -12.37870 -12.30403 -12.22406 -12.07831 -12.03996 -11.96565 -11.89915 -11.54166 -11.47717 -11.41058 -11.14685 -11.10313 -10.86347 -10.57919 -10.53964 -10.35626 -10.15288 -10.08518 -9.52295 -9.22790 -9.02399 -8.63914 -8.09207 -6.41718 -4.47387 1.93001 2.41026 2.89607 2.99621 3.08137 3.15737 3.31137 3.36963 4.04520 4.23608 4.44389 4.52708 4.66660 4.68527 4.73635 4.77128 4.87508 4.90544 5.01664 5.08444 5.40558 5.43301 5.49183 5.50793 5.53338 5.61377 5.63370 5.71869 5.79716 5.82862 5.83462 5.88155 5.98865 5.99462 6.17717 6.19656 6.29011 6.29797 6.38486 6.47664 6.53017 6.54409 6.65130 7.19356 7.75336 8.01160 8.16573 8.39469 8.52574 8.61482 9.16018 10.70201 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.005882 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.396074 B = 4759.491943 C = 6120.841808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.113 3.887 3 C -0.143 4.143 4 C -0.180 4.180 5 O -0.323 6.323 6 C 0.478 3.522 7 O -0.491 6.491 8 C 0.107 3.893 9 C 0.542 3.458 10 O -0.542 6.542 11 N -0.613 5.613 12 C 0.074 3.926 13 C 0.194 3.806 14 O -0.549 6.549 15 C -0.531 4.531 16 H 0.093 0.907 17 C 0.082 3.918 18 N -0.876 5.876 19 Si 0.851 3.149 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.248 1.248 23 C 0.120 3.880 24 C -0.128 4.128 25 C -0.154 4.154 26 C 0.043 3.957 27 O -0.340 6.340 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.351 0.649 40 H 0.271 0.729 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 -9.494 -13.432 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.077 3.923 3 C -0.200 4.200 4 C -0.237 4.237 5 O -0.239 6.239 6 C 0.319 3.681 7 O -0.379 6.379 8 C 0.063 3.937 9 C 0.327 3.673 10 O -0.422 6.422 11 N -0.344 5.344 12 C -0.049 4.049 13 C 0.152 3.848 14 O -0.360 6.360 15 C -0.569 4.569 16 H 0.111 0.889 17 C -0.124 4.124 18 N -0.511 5.511 19 Si 0.679 3.321 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.173 1.173 23 C -0.002 4.002 24 C -0.165 4.165 25 C -0.192 4.192 26 C -0.033 4.033 27 O -0.258 6.258 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.204 0.796 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.274 -10.312 -13.500 17.300 hybrid contribution 0.438 0.844 -1.145 1.488 sum 3.712 -9.467 -14.645 17.830 Atomic orbital electron populations 1.22498 0.93851 1.04650 1.03168 1.22261 0.94682 0.92497 0.82815 1.21883 1.02299 0.92559 1.03297 1.22472 1.01619 1.02881 0.96719 1.86690 1.68447 1.24103 1.44656 1.23153 0.77532 0.81366 0.86028 1.90575 1.34910 1.70447 1.41999 1.22193 0.85647 0.95481 0.90392 1.19228 0.84884 0.80022 0.83124 1.90685 1.33225 1.46340 1.71905 1.49599 1.33429 1.22171 1.29216 1.24518 0.95440 0.83026 1.01941 1.20307 0.86785 0.89827 0.87838 1.86459 1.49380 1.34449 1.65718 1.21116 1.42558 0.99067 0.94172 0.88948 1.24976 0.93939 0.96411 0.97059 1.69847 1.40163 1.09361 1.31742 0.87422 0.78441 0.80205 0.85988 1.19434 1.20999 1.17294 1.23262 0.98826 0.90093 0.87977 1.23076 1.01076 0.89534 1.02847 1.23342 0.94634 0.98810 1.02390 1.23592 0.93129 0.84422 1.02194 1.88758 1.14746 1.33618 1.88690 0.91253 0.91073 0.90069 0.91356 0.90319 0.91090 0.90077 0.91015 0.91992 0.88707 0.90507 0.79644 0.91901 0.90884 0.88421 0.88756 0.86914 0.89655 0.88901 0.88471 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 8.37 37.16 0.31 -2.37 16 2 C 0.11 1.64 1.13 -90.62 -0.10 1.53 16 3 C -0.14 -1.82 8.85 37.16 0.33 -1.49 16 4 C -0.18 -2.17 8.37 37.16 0.31 -1.86 16 5 O -0.32 -5.65 8.96 -44.01 -0.39 -6.05 16 6 C 0.48 8.40 6.10 36.01 0.22 8.62 16 7 O -0.49 -8.67 11.40 -18.75 -0.21 -8.88 16 8 C 0.11 1.81 1.07 -92.19 -0.10 1.72 16 9 C 0.54 10.93 6.99 -10.99 -0.08 10.85 16 10 O -0.54 -11.95 16.33 5.56 0.09 -11.86 16 11 N -0.61 -12.69 3.66 -185.03 -0.68 -13.36 16 12 C 0.07 1.53 6.12 -8.36 -0.05 1.48 16 13 C 0.19 4.43 1.10 -91.13 -0.10 4.33 16 14 O -0.55 -12.98 13.33 -35.23 -0.47 -13.45 16 15 C -0.53 -13.60 9.26 -34.44 -0.32 -13.92 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.88 -24.31 13.96 55.43 0.77 -23.53 16 19 Si 0.85 18.82 24.42 -169.99 -4.15 14.67 16 20 H -0.27 -5.77 7.06 56.52 0.40 -5.38 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.25 -5.22 5.51 56.52 0.31 -4.90 16 23 C 0.12 2.52 8.02 -8.51 -0.07 2.45 16 24 C -0.13 -1.73 5.67 -24.78 -0.14 -1.87 16 25 C -0.15 -1.59 7.16 -24.48 -0.18 -1.77 16 26 C 0.04 0.47 7.78 38.19 0.30 0.77 16 27 O -0.34 -5.34 9.12 -47.34 -0.43 -5.77 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.30 5.89 -51.93 -0.31 1.00 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.09 5.89 -51.93 -0.31 0.79 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.90 8.10 -51.93 -0.42 1.48 16 38 H 0.08 1.63 6.38 -51.93 -0.33 1.30 16 39 H 0.35 7.97 3.16 45.56 0.14 8.11 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.10 1.87 8.10 -51.93 -0.42 1.45 16 43 H 0.09 1.17 7.34 -51.93 -0.38 0.79 16 44 H 0.11 1.66 6.76 -51.93 -0.35 1.31 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -30.98 378.00 -6.63 -37.62 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -7.10 Total: 14.42 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 0.24 Total: 10.50 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.10 Total: -36.90 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.42 Total: -46.01 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.15 Total: 14.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.98 -6.63 -37.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332559601.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.607 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds