Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47388 * 2 1 4 4 H 1.09004 * 109.47093 * 179.20914 * 3 2 1 5 5 C 1.50705 * 109.46991 * 299.20546 * 3 2 1 6 6 N 1.34780 * 120.00067 * 299.99721 * 5 3 2 7 7 O 1.21276 * 119.99916 * 120.00270 * 5 3 2 8 8 N 1.46899 * 109.47302 * 59.20376 * 3 2 1 9 9 C 1.48559 * 110.99962 * 170.65828 * 8 3 2 10 10 C 1.54385 * 104.59266 * 200.96184 * 9 8 3 11 11 H 1.09000 * 118.15130 * 244.14361 * 10 9 8 12 12 C 1.52996 * 118.12816 * 87.23261 * 10 9 8 13 13 H 1.09000 * 117.41208 * 15.98728 * 12 10 9 14 14 C 1.52997 * 117.44234 * 160.68343 * 12 10 9 15 15 N 1.46496 * 109.47238 * 244.22448 * 14 12 10 16 16 C 1.34776 * 120.00242 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99828 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00238 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.47171 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99839 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00296 * 359.72294 * 20 19 18 22 22 C 1.38798 * 119.99879 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00060 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00171 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46747 * 60.00293 * 24 22 20 26 26 H 1.48500 * 109.47192 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47148 * 300.00624 * 24 22 20 28 28 C 1.53002 * 60.54530 * 268.32819 * 12 10 9 29 29 H 1.08991 * 119.52839 * 248.26495 * 28 12 10 30 30 C 1.52147 * 110.66518 * 55.17081 * 8 3 2 31 31 H 1.09004 * 109.46805 * 65.39380 * 1 2 3 32 32 H 1.08998 * 109.47754 * 185.39692 * 1 2 3 33 33 H 1.09003 * 109.47173 * 305.39978 * 1 2 3 34 34 H 1.09005 * 109.46986 * 239.99453 * 2 1 3 35 35 H 1.09002 * 109.46827 * 120.00200 * 2 1 3 36 36 H 0.97004 * 119.99226 * 0.02562 * 6 5 3 37 37 H 0.96992 * 119.99950 * 180.02562 * 6 5 3 38 38 H 1.09002 * 110.41321 * 82.18264 * 9 8 3 39 39 H 1.08995 * 110.51435 * 319.78705 * 9 8 3 40 40 H 1.09005 * 109.47249 * 124.22530 * 14 12 10 41 41 H 1.08999 * 109.47248 * 4.23044 * 14 12 10 42 42 H 0.96996 * 120.00152 * 359.97438 * 15 14 12 43 43 H 1.09001 * 109.47310 * 59.99797 * 18 16 15 44 44 H 1.08999 * 109.47354 * 299.99922 * 18 16 15 45 45 H 0.96999 * 119.99957 * 180.02562 * 23 22 20 46 46 H 1.09000 * 111.91833 * 40.60107 * 30 8 3 47 47 H 1.09002 * 110.52728 * 277.02400 * 30 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4424 0.0142 5 6 1.5539 2.1471 -1.2402 6 7 1.8954 1.6810 -2.4579 7 8 0.8553 3.1337 -1.1427 8 7 1.5348 2.1405 1.1897 9 6 2.1843 3.4676 1.3442 10 6 1.9921 3.8236 2.8341 11 1 1.3821 4.6926 3.0806 12 6 3.0379 3.3281 3.8348 13 1 3.9922 2.9852 3.4350 14 6 3.1068 4.0340 5.1904 15 7 4.4025 4.7038 5.3270 16 6 4.6895 5.3941 6.4484 17 8 3.8748 5.4611 7.3444 18 6 6.0222 6.0835 6.5887 19 16 6.1037 6.9186 8.1925 20 6 7.7171 7.6194 8.0908 21 1 8.3216 7.4578 7.2106 22 6 8.2133 8.3747 9.1443 23 7 7.4787 8.5670 10.2195 24 14 9.9241 9.1170 9.0370 25 1 9.9925 10.0366 7.8729 26 1 10.2153 9.8717 10.2823 27 1 10.9248 8.0325 8.8705 28 6 1.8042 2.4696 3.5488 29 1 1.0542 2.3306 4.3274 30 6 1.9101 1.3846 2.4556 31 1 -0.3633 0.4279 -0.9344 32 1 -0.3634 -1.0231 0.0967 33 1 -0.3634 0.5953 0.8377 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.4539 0.8917 -2.5358 37 1 1.5828 2.1348 -3.2561 38 1 1.6944 4.2068 0.7104 39 1 3.2452 3.4041 1.1024 40 1 2.9911 3.3005 5.9884 41 1 2.3074 4.7721 5.2568 42 1 5.0542 4.6499 4.6106 43 1 6.1373 6.8174 5.7910 44 1 6.8218 5.3458 6.5217 45 1 7.8253 9.0952 10.9556 46 1 2.9252 0.9904 2.4083 47 1 1.1980 0.5817 2.6467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649476932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = -38.570105 kcal Electronic energy + Delta-G solvation = -26501.185706 eV Core-core repulsion = 22618.044787 eV Total energy + Delta-G solvation = -3883.140918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92963 -39.60510 -38.86231 -36.22155 -34.57403 -33.87501 -32.41971 -32.26399 -29.80747 -28.80940 -27.95231 -26.01756 -25.38775 -23.40878 -22.65474 -21.04376 -20.49633 -20.07675 -19.94279 -17.97381 -17.85954 -17.16634 -16.59817 -16.23757 -16.07724 -15.61898 -15.27392 -14.99024 -14.79607 -14.64415 -14.26675 -13.96929 -13.89704 -13.73676 -13.40448 -13.18856 -13.00360 -12.79099 -12.55068 -12.50615 -12.09078 -11.88592 -11.71055 -11.65776 -11.50297 -11.24697 -11.03712 -11.03175 -10.76928 -10.41427 -10.24026 -10.16371 -10.11670 -9.81549 -9.38487 -9.05427 -8.87806 -8.84613 -8.22827 -6.48881 -6.20496 -3.91138 2.21982 2.80395 2.99847 3.10889 3.22693 3.24093 3.28632 3.32765 3.50691 3.73435 4.06794 4.16592 4.21456 4.36218 4.40035 4.49472 4.60761 4.75303 4.76730 4.88650 4.91083 4.98758 5.09358 5.14417 5.16004 5.20563 5.21087 5.40729 5.46785 5.57601 5.58953 5.61753 5.72556 5.79895 5.87310 5.90866 5.95823 6.00164 6.14999 6.22696 6.28845 6.42757 6.62680 6.86663 7.60111 7.71825 7.84339 8.35941 8.62478 9.24539 10.86858 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025587 B = 0.001630 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.031543 B =17173.181480 C =17767.394106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.050 3.950 4 H 0.068 0.932 5 C 0.525 3.475 6 N -0.859 5.859 7 O -0.520 6.520 8 N -0.480 5.480 9 C 0.061 3.939 10 C -0.150 4.150 11 H 0.122 0.878 12 C -0.132 4.132 13 H 0.105 0.895 14 C 0.154 3.846 15 N -0.737 5.737 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.154 4.154 29 H 0.122 0.878 30 C 0.059 3.941 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.399 0.601 37 H 0.402 0.598 38 H 0.101 0.899 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.054 0.946 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.467 -20.770 -26.400 35.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.063 4.063 4 H 0.086 0.914 5 C 0.308 3.692 6 N -0.424 5.424 7 O -0.394 6.394 8 N -0.206 5.206 9 C -0.066 4.066 10 C -0.169 4.169 11 H 0.140 0.860 12 C -0.151 4.151 13 H 0.123 0.877 14 C 0.030 3.970 15 N -0.391 5.391 16 C 0.318 3.682 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.174 4.174 29 H 0.140 0.860 30 C -0.068 4.068 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.227 0.773 37 H 0.233 0.767 38 H 0.119 0.881 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.909 -19.898 -24.536 34.126 hybrid contribution 3.456 0.041 -1.890 3.939 sum -9.453 -19.857 -26.426 34.380 Atomic orbital electron populations 1.21731 0.94210 1.01585 1.03194 1.21592 0.98016 0.92642 1.02904 1.21868 0.98273 0.95295 0.90858 0.91415 1.20370 0.79801 0.84181 0.84838 1.43867 1.56420 1.33969 1.08122 1.90759 1.36340 1.25682 1.86651 1.66549 1.52610 1.01681 0.99712 1.22708 0.96869 0.92063 0.94971 1.23615 1.03299 0.98455 0.91557 0.85971 1.22693 0.94523 1.01734 0.96160 0.87654 1.20726 0.86317 0.95907 0.94064 1.45964 1.18009 1.55024 1.20150 1.20304 0.88853 0.77866 0.81202 1.90707 1.49338 1.59736 1.39447 1.23529 0.96142 1.02925 1.07790 1.85401 1.22113 1.63501 1.12305 1.22830 1.01353 1.37989 1.06295 0.90986 1.24991 0.98471 0.95616 0.94491 1.70009 1.36875 1.37635 1.05750 0.86226 0.82519 0.79084 0.77672 1.19943 1.20801 1.19968 1.23378 1.00701 0.92520 1.00753 0.86015 1.23324 0.99942 0.95705 0.87780 0.93093 0.92804 0.90668 0.91259 0.90512 0.77252 0.76678 0.88125 0.94034 0.90922 0.91198 0.76821 0.89208 0.89251 0.92128 0.92744 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.49 37.16 0.35 -0.51 16 2 C -0.11 -0.47 5.21 -26.73 -0.14 -0.61 16 3 C 0.05 0.30 2.05 -68.87 -0.14 0.16 16 4 H 0.07 0.33 7.90 -51.93 -0.41 -0.08 16 5 C 0.52 3.98 6.10 -10.98 -0.07 3.92 16 6 N -0.86 -3.16 8.76 31.22 0.27 -2.88 16 7 O -0.52 -6.33 15.64 5.56 0.09 -6.24 16 8 N -0.48 -3.83 4.06 -220.14 -0.89 -4.72 16 9 C 0.06 0.55 5.60 -2.18 -0.01 0.53 16 10 C -0.15 -1.34 6.74 -89.24 -0.60 -1.94 16 11 H 0.12 1.17 8.12 -51.93 -0.42 0.75 16 12 C -0.13 -1.13 5.38 -90.62 -0.49 -1.62 16 13 H 0.11 0.81 8.04 -51.93 -0.42 0.40 16 14 C 0.15 1.79 5.95 -4.04 -0.02 1.76 16 15 N -0.74 -9.83 5.56 -60.30 -0.33 -10.17 16 16 C 0.53 10.00 7.85 -10.99 -0.09 9.91 16 17 O -0.52 -11.91 15.86 5.55 0.09 -11.83 16 18 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.36 9.50 30.94 0.29 -15.06 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 24 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 C -0.15 -1.22 6.75 -89.24 -0.60 -1.82 16 29 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 30 C 0.06 0.39 5.10 -0.11 0.00 0.39 16 31 H 0.05 0.35 7.44 -51.93 -0.39 -0.04 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.57 7.37 -51.93 -0.38 0.19 16 34 H 0.07 0.15 7.54 -51.93 -0.39 -0.24 16 35 H 0.08 0.27 6.88 -51.93 -0.36 -0.08 16 36 H 0.40 0.30 8.24 -40.82 -0.34 -0.04 16 37 H 0.40 1.25 8.93 -40.82 -0.36 0.88 16 38 H 0.10 1.10 6.87 -51.93 -0.36 0.75 16 39 H 0.04 0.34 7.83 -51.93 -0.41 -0.07 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 42 H 0.40 4.14 8.40 -40.82 -0.34 3.80 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 47 H 0.09 0.53 7.72 -51.93 -0.40 0.13 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -37.38 396.04 -10.17 -47.55 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.46 Total: 1.04 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.39 Total: -5.76 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.22 Total: -43.31 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.18 Total: -18.07 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.38 -10.17 -47.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649476932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.978 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds