Wall clock time and date at job start Sat Apr 11 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46976 * 2 1 4 4 C 1.53002 * 109.46919 * 240.00020 * 2 1 3 5 5 O 1.45200 * 109.46999 * 120.00052 * 2 1 3 6 6 C 1.34639 * 117.00252 * 57.95835 * 5 2 1 7 7 O 1.21513 * 119.99848 * 5.10805 * 6 5 2 8 8 N 1.34770 * 119.99753 * 185.11509 * 6 5 2 9 9 C 1.46503 * 119.99674 * 185.22265 * 8 6 5 10 10 C 1.50698 * 115.55561 * 303.10210 * 9 8 6 11 11 O 1.20829 * 120.00116 * 119.18333 * 10 9 8 12 12 O 1.34228 * 119.99871 * 299.18797 * 10 9 8 13 13 C 1.45194 * 116.99969 * 185.06319 * 12 10 9 14 14 C 1.53000 * 109.47239 * 184.62896 * 13 12 10 15 15 C 1.50703 * 113.00128 * 184.99751 * 14 13 12 16 16 H 1.08001 * 119.99902 * 233.49908 * 15 14 13 17 17 C 1.37874 * 119.99945 * 53.49918 * 15 14 13 18 18 N 1.31511 * 120.00113 * 18.56191 * 17 15 14 19 19 Si 1.86804 * 119.99987 * 198.83291 * 17 15 14 20 20 H 1.48501 * 109.47203 * 174.72499 * 19 17 15 21 21 H 1.48496 * 109.47157 * 294.72905 * 19 17 15 22 22 H 1.48504 * 109.46739 * 54.73141 * 19 17 15 23 23 C 1.54030 * 113.92953 * 316.93154 * 14 13 12 24 24 O 1.44177 * 85.52081 * 91.65595 * 23 14 13 25 25 C 1.44179 * 93.33845 * 24.19445 * 24 23 14 26 26 C 1.53004 * 117.51326 * 88.80421 * 9 8 6 27 27 C 1.52997 * 60.00386 * 107.48079 * 26 9 8 28 28 H 1.09004 * 109.47318 * 303.89953 * 1 2 3 29 29 H 1.08999 * 109.47617 * 63.90072 * 1 2 3 30 30 H 1.08998 * 109.47182 * 183.90407 * 1 2 3 31 31 H 1.09010 * 109.46875 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47549 * 299.99874 * 3 2 1 33 33 H 1.08993 * 109.47387 * 60.00210 * 3 2 1 34 34 H 1.08998 * 109.46962 * 299.99823 * 4 2 1 35 35 H 1.09003 * 109.47054 * 59.99989 * 4 2 1 36 36 H 1.08997 * 109.46994 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00898 * 5.22835 * 8 6 5 38 38 H 1.09000 * 109.47111 * 64.63152 * 13 12 10 39 39 H 1.09001 * 109.47367 * 304.63317 * 13 12 10 40 40 H 0.97005 * 119.99750 * 1.97866 * 18 17 15 41 41 H 1.08998 * 113.87009 * 205.80776 * 23 14 13 42 42 H 1.09009 * 113.86399 * 337.51055 * 23 14 13 43 43 H 1.08997 * 113.86865 * 221.65823 * 25 24 23 44 44 H 1.09005 * 113.86494 * 89.94962 * 25 24 23 45 45 H 1.09003 * 117.49717 * 214.97251 * 26 9 8 46 46 H 1.08994 * 117.50348 * 359.97438 * 26 9 8 47 47 H 1.08995 * 117.50151 * 252.51502 * 27 26 9 48 48 H 1.09001 * 117.49980 * 107.48439 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1856 6 6 1.6176 -1.9594 1.3600 7 8 0.9644 -2.5156 0.4995 8 7 1.9454 -2.6184 2.4889 9 6 1.6141 -4.0384 2.6305 10 6 0.1560 -4.3847 2.4720 11 8 -0.1947 -5.1344 1.5918 12 8 -0.7531 -3.8602 3.3087 13 6 -2.1219 -4.3241 3.1698 14 6 -3.0262 -3.5371 4.1205 15 6 -4.4481 -4.0363 4.1289 16 1 -5.2624 -3.3498 3.9499 17 6 -4.7094 -5.3693 4.3651 18 7 -3.7974 -6.1275 4.9332 19 14 -6.3562 -6.1000 3.8712 20 1 -6.3402 -7.5651 4.1133 21 1 -7.4361 -5.4768 4.6777 22 1 -6.6011 -5.8391 2.4299 23 6 -2.4296 -3.3352 5.5262 24 8 -1.8975 -2.1029 5.0000 25 6 -2.9043 -2.0088 3.9723 26 6 2.6404 -5.0570 2.1304 27 6 2.4299 -4.8577 3.6327 28 1 -0.3634 0.5732 0.8530 29 1 -0.3634 0.4521 -0.9228 30 1 -0.3633 -1.0253 0.0700 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2491 37 1 2.4006 -2.1527 3.2078 38 1 -2.1727 -5.3849 3.4150 39 1 -2.4546 -4.1722 2.1429 40 1 -2.9518 -5.7426 5.2121 41 1 -3.1774 -3.1950 6.3067 42 1 -1.6668 -4.0676 5.7909 43 1 -2.5181 -1.6890 3.0045 44 1 -3.7972 -1.4635 4.2783 45 1 2.2610 -5.9775 1.6868 46 1 3.5622 -4.6708 1.6956 47 1 3.2131 -4.3402 4.1864 48 1 1.9118 -5.6471 4.1774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650487593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:40 Heat of formation + Delta-G solvation = -146.455149 kcal Electronic energy + Delta-G solvation = -32260.660897 eV Core-core repulsion = 27897.796110 eV Total energy + Delta-G solvation = -4362.864787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99063 -40.15074 -39.30534 -37.83631 -36.47369 -35.57350 -34.30069 -33.46229 -32.64201 -29.58614 -27.54819 -27.45219 -26.22962 -25.47505 -24.30327 -23.95471 -22.95611 -22.60772 -20.24434 -19.71845 -18.78932 -18.28804 -17.83126 -17.11131 -16.40702 -16.34069 -16.03854 -15.71281 -15.28626 -15.00721 -14.65194 -14.54910 -14.39972 -14.24397 -13.92838 -13.75197 -13.52357 -12.89675 -12.64796 -12.48722 -12.32160 -12.01370 -12.00373 -11.91137 -11.80116 -11.72703 -11.43999 -11.38991 -11.26929 -11.16789 -10.94645 -10.90217 -10.43219 -10.27517 -10.22536 -10.10431 -10.04590 -10.04056 -9.48947 -9.23577 -8.94873 -8.66954 -8.16962 -6.60383 -4.32820 1.85141 2.62027 2.77581 3.00372 3.34616 3.39762 3.56486 3.58671 3.96154 4.37330 4.50755 4.58230 4.59537 4.64568 4.78339 4.80937 4.89490 5.04988 5.31034 5.32956 5.37151 5.41741 5.53177 5.55898 5.62445 5.65897 5.66498 5.76405 5.84978 5.86703 5.87691 6.08651 6.18835 6.22842 6.30526 6.34712 6.35364 6.43803 6.49251 6.64726 6.94690 7.07682 7.22805 7.29107 7.29936 7.88250 8.19884 8.33057 8.35218 8.58248 9.35010 10.72907 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.003668 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.374548 B = 7632.291850 C = 8413.508238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.652 3.348 7 O -0.547 6.547 8 N -0.669 5.669 9 C 0.115 3.885 10 C 0.490 3.510 11 O -0.493 6.493 12 O -0.337 6.337 13 C 0.088 3.912 14 C 0.010 3.990 15 C -0.605 4.605 16 H 0.064 0.936 17 C 0.034 3.966 18 N -0.887 5.887 19 Si 1.061 2.939 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.040 3.960 24 O -0.390 6.390 25 C 0.045 3.955 26 C -0.146 4.146 27 C -0.146 4.146 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.274 0.726 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.116 0.884 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.091 9.276 -5.662 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.100 3.900 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.406 3.594 7 O -0.434 6.434 8 N -0.330 5.330 9 C 0.026 3.974 10 C 0.330 3.670 11 O -0.379 6.379 12 O -0.252 6.252 13 C 0.015 3.985 14 C 0.009 3.991 15 C -0.642 4.642 16 H 0.082 0.918 17 C -0.174 4.174 18 N -0.520 5.520 19 Si 0.887 3.113 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.037 4.037 24 O -0.309 6.309 25 C -0.032 4.032 26 C -0.184 4.184 27 C -0.184 4.184 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.250 0.750 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.134 0.866 46 H 0.129 0.871 47 H 0.134 0.866 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.965 7.603 -6.385 17.135 hybrid contribution 0.728 1.606 0.158 1.770 sum 14.693 9.209 -6.227 18.425 Atomic orbital electron populations 1.22531 0.93781 1.05375 1.02684 1.22087 0.94549 0.91375 0.81950 1.21854 1.02038 0.92540 1.03208 1.22524 1.01315 1.03797 0.96374 1.86272 1.69698 1.24694 1.47150 1.18017 0.78310 0.80579 0.82535 1.90995 1.41269 1.68450 1.42725 1.43652 1.63625 1.08448 1.17241 1.19724 0.88153 0.79646 1.09861 1.22093 0.87225 0.78127 0.79560 1.90642 1.80634 1.34555 1.32071 1.86586 1.20502 1.62846 1.55265 1.23312 0.74641 1.00286 1.00306 1.21072 0.94899 0.91883 0.91213 1.21699 0.89687 0.96977 1.55814 0.91813 1.25918 1.04807 0.93920 0.92726 1.70868 1.08163 1.40123 1.32876 0.83673 0.74350 0.76500 0.76727 1.20535 1.21144 1.21045 1.24189 0.95917 0.85118 0.98508 1.89467 1.47975 1.44380 1.49118 1.23874 0.90360 0.97783 0.91145 1.23522 0.98753 0.99942 0.96189 1.23492 1.00805 1.00863 0.93205 0.91913 0.91025 0.89365 0.91569 0.90133 0.91368 0.89171 0.91205 0.92305 0.75047 0.89992 0.91999 0.91478 0.91267 0.91557 0.91781 0.91376 0.86559 0.87114 0.86594 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 8.39 37.16 0.31 -2.12 16 2 C 0.14 1.63 1.13 -90.62 -0.10 1.53 16 3 C -0.14 -1.19 8.85 37.16 0.33 -0.86 16 4 C -0.18 -2.07 8.41 37.16 0.31 -1.76 16 5 O -0.36 -4.99 9.94 -40.32 -0.40 -5.39 16 6 C 0.65 10.35 7.88 54.05 0.43 10.78 16 7 O -0.55 -10.37 10.99 -19.28 -0.21 -10.58 16 8 N -0.67 -9.28 5.49 -53.55 -0.29 -9.57 16 9 C 0.11 1.74 2.45 -132.96 -0.33 1.41 16 10 C 0.49 10.05 6.18 36.00 0.22 10.27 16 11 O -0.49 -11.43 16.25 -18.75 -0.30 -11.74 16 12 O -0.34 -7.49 8.63 -45.26 -0.39 -7.88 16 13 C 0.09 2.15 4.76 37.16 0.18 2.32 16 14 C 0.01 0.25 0.73 -154.58 -0.11 0.14 16 15 C -0.61 -16.02 8.36 -34.44 -0.29 -16.31 16 16 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 17 C 0.03 0.91 5.07 -17.82 -0.09 0.82 16 18 N -0.89 -24.80 12.71 55.43 0.70 -24.10 16 19 Si 1.06 23.85 29.94 -169.99 -5.09 18.76 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.04 0.93 6.88 37.61 0.26 1.19 16 24 O -0.39 -9.03 11.60 -52.51 -0.61 -9.64 16 25 C 0.05 1.02 8.16 37.61 0.31 1.33 16 26 C -0.15 -1.74 9.97 -26.73 -0.27 -2.01 16 27 C -0.15 -1.58 10.15 -26.73 -0.27 -1.85 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.47 5.82 -51.93 -0.30 1.17 16 31 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.29 5.86 -51.93 -0.30 0.98 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.41 4.45 8.93 -40.82 -0.36 4.09 16 38 H 0.08 2.16 6.17 -51.93 -0.32 1.84 16 39 H 0.06 1.57 7.98 -51.93 -0.41 1.16 16 40 H 0.27 7.55 5.51 -40.82 -0.22 7.33 16 41 H 0.07 1.63 8.09 -51.93 -0.42 1.21 16 42 H 0.07 1.52 7.73 -51.92 -0.40 1.12 16 43 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 44 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 45 H 0.12 1.49 7.92 -51.93 -0.41 1.08 16 46 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 393.72 15.07 5.93 5.93 Total: -1.00 -32.87 393.72 -7.22 -40.09 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.44 Total: 9.23 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 0.89 Total: 4.89 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.41 Total: -33.67 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.92 Total: -45.24 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.09 Total: 18.76 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.87 -7.22 -40.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650487593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.365 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds